Wall clock time and date at job start Tue Mar 31 2020 17:20:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50701 * 110.53622 * 2 1 4 4 O 1.21280 * 119.99764 * 118.84394 * 3 2 1 5 5 N 1.34775 * 120.00089 * 298.84321 * 3 2 1 6 6 C 1.46502 * 119.99680 * 180.02562 * 5 3 2 7 7 C 1.50700 * 109.46854 * 179.97438 * 6 5 3 8 8 C 1.38238 * 119.99969 * 269.72770 * 7 6 5 9 9 C 1.38235 * 119.99644 * 179.77030 * 8 7 6 10 10 C 1.38238 * 120.00444 * 0.47523 * 9 8 7 11 11 C 1.50700 * 120.00244 * 179.77027 * 10 9 8 12 12 N 1.46502 * 109.46854 * 270.02679 * 11 10 9 13 13 C 1.36941 * 119.99355 * 180.02562 * 12 11 10 14 14 H 1.07999 * 120.00325 * 359.97438 * 13 12 11 15 15 C 1.38811 * 119.99665 * 180.02562 * 13 12 11 16 16 N 1.31618 * 120.00367 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 119.99901 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47131 * 89.99848 * 17 15 13 19 19 H 1.48502 * 109.47071 * 209.99618 * 17 15 13 20 20 H 1.48498 * 109.47488 * 329.99722 * 17 15 13 21 21 C 1.38240 * 119.99370 * 359.80164 * 10 9 8 22 22 C 1.38233 * 119.99932 * 90.00076 * 7 6 5 23 23 C 1.54625 * 110.48837 * 122.61672 * 2 1 3 24 24 C 1.54474 * 101.76763 * 143.47516 * 23 2 1 25 25 N 1.46761 * 105.47258 * 334.58255 * 24 23 2 26 26 C 1.34417 * 111.30293 * 17.01799 * 25 24 23 27 27 O 1.21283 * 124.94747 * 179.63100 * 26 25 24 28 28 H 1.09006 * 109.46962 * 181.15611 * 1 2 3 29 29 H 1.09004 * 109.47188 * 301.15370 * 1 2 3 30 30 H 1.09002 * 109.47227 * 61.16009 * 1 2 3 31 31 H 0.97000 * 120.00112 * 359.97438 * 5 3 2 32 32 H 1.08998 * 109.47404 * 299.99642 * 6 5 3 33 33 H 1.08997 * 109.46963 * 60.00107 * 6 5 3 34 34 H 1.07990 * 120.00178 * 359.97438 * 8 7 6 35 35 H 1.08002 * 119.99927 * 180.25282 * 9 8 7 36 36 H 1.08998 * 109.46981 * 30.02775 * 11 10 9 37 37 H 1.08997 * 109.47091 * 150.03058 * 11 10 9 38 38 H 0.96989 * 120.00650 * 0.02562 * 12 11 10 39 39 H 0.96996 * 120.00474 * 180.02562 * 16 15 13 40 40 H 1.07997 * 119.99450 * 179.97438 * 21 10 9 41 41 H 1.07995 * 120.00090 * 359.97438 * 22 7 6 42 42 H 1.09001 * 110.96806 * 261.59642 * 23 2 1 43 43 H 1.09007 * 110.96934 * 25.35624 * 23 2 1 44 44 H 1.08998 * 110.24827 * 215.58069 * 24 23 2 45 45 H 1.09000 * 110.31659 * 93.61957 * 24 23 2 46 46 H 0.97006 * 124.35018 * 196.98768 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0587 1.4112 0.0000 4 8 2.7459 1.8013 0.9200 5 7 1.7678 2.2398 -1.0224 6 6 2.2822 3.6116 -1.0226 7 6 1.8170 4.3223 -2.2674 8 6 2.5884 4.2846 -3.4139 9 6 2.1593 4.9326 -4.5571 10 6 0.9637 5.6265 -4.5509 11 6 0.4985 6.3372 -5.7957 12 7 1.0129 7.7089 -5.7959 13 6 0.7173 8.5508 -6.8348 14 1 0.1054 8.2034 -7.6540 15 6 1.2052 9.8503 -6.8353 16 7 1.9514 10.2736 -5.8371 17 14 0.8026 10.9985 -8.2526 18 1 -0.4522 11.7340 -7.9528 19 1 1.9128 11.9677 -8.4352 20 1 0.6271 10.2068 -9.4966 21 6 0.1952 5.6689 -3.4026 22 6 0.6217 5.0166 -2.2610 23 6 2.0712 -0.7807 1.2200 24 6 3.3199 -1.4686 0.6252 25 7 3.0563 -1.5817 -0.8142 26 6 2.0595 -0.7638 -1.1938 27 8 1.6443 -0.6544 -2.3281 28 1 -0.3633 -1.0275 0.0207 29 1 -0.3634 0.5317 0.8795 30 1 -0.3634 0.4957 -0.9002 31 1 1.2185 1.9277 -1.7584 32 1 1.9122 4.1385 -0.1431 33 1 3.3718 3.5909 -1.0021 34 1 3.5245 3.7462 -3.4175 35 1 2.7599 4.8998 -5.4541 36 1 0.8689 5.8101 -6.6750 37 1 -0.5911 6.3578 -5.8166 38 1 1.5628 8.0208 -5.0604 39 1 2.2920 11.1818 -5.8372 40 1 -0.7387 6.2113 -3.3977 41 1 0.0211 5.0494 -1.3641 42 1 2.3471 -0.1015 2.0267 43 1 1.3461 -1.5184 1.5640 44 1 3.4504 -2.4580 1.0636 45 1 4.2068 -0.8594 0.7995 46 1 3.5396 -2.1707 -1.4145 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568120396.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:20:24 Heat of formation + Delta-G solvation = -64.005825 kcal Electronic energy + Delta-G solvation = -27389.471153 eV Core-core repulsion = 23470.697969 eV Total energy + Delta-G solvation = -3918.773183 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.30410 -40.62842 -39.82495 -37.55098 -36.90669 -35.80672 -34.36793 -33.62119 -31.88223 -31.78425 -29.77326 -28.47980 -26.63345 -25.97111 -24.31021 -23.66086 -23.23563 -22.62316 -21.72859 -20.57863 -19.34599 -18.75919 -18.36999 -17.37673 -16.98473 -16.87211 -16.62251 -16.31767 -16.21277 -15.70730 -15.56238 -15.26392 -15.00677 -14.96182 -14.73663 -14.66348 -14.37163 -14.12571 -13.74514 -13.64291 -13.45213 -13.32180 -13.21569 -13.12848 -13.00490 -12.77495 -12.32438 -12.20486 -12.14365 -11.97783 -11.94262 -11.75722 -11.23004 -11.00005 -10.87837 -10.23064 -10.16202 -9.84738 -9.66846 -9.05177 -7.97012 -5.27689 0.20984 0.47938 1.15026 1.46532 1.48788 1.50619 1.57407 2.11479 2.35281 2.54378 2.85853 3.13432 3.35367 3.35841 3.55523 3.65364 3.85947 3.88655 4.01820 4.07483 4.09942 4.22353 4.25364 4.38550 4.53035 4.61002 4.66241 4.67060 4.71867 4.76032 4.86411 4.87175 5.00878 5.04586 5.08532 5.14006 5.16843 5.26133 5.42535 5.46151 5.56100 5.69397 5.78257 5.89665 6.03404 6.23550 6.34575 6.99352 7.10335 7.30106 8.02538 8.28263 9.26263 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.029975 B = 0.001966 C = 0.001937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.878424 B =14241.474660 C =14452.240592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.118 4.118 3 C 0.532 3.468 4 O -0.557 6.557 5 N -0.712 5.712 6 C 0.171 3.829 7 C -0.113 4.113 8 C -0.101 4.101 9 C -0.117 4.117 10 C -0.086 4.086 11 C 0.186 3.814 12 N -0.739 5.739 13 C -0.249 4.249 14 H 0.078 0.922 15 C -0.076 4.076 16 N -0.969 5.969 17 Si 0.979 3.021 18 H -0.285 1.285 19 H -0.295 1.295 20 H -0.268 1.268 21 C -0.115 4.115 22 C -0.096 4.096 23 C -0.114 4.114 24 C 0.096 3.904 25 N -0.718 5.718 26 C 0.523 3.477 27 O -0.558 6.558 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.061 0.939 31 H 0.410 0.590 32 H 0.085 0.915 33 H 0.074 0.926 34 H 0.136 0.864 35 H 0.120 0.880 36 H 0.029 0.971 37 H 0.032 0.968 38 H 0.373 0.627 39 H 0.252 0.748 40 H 0.125 0.875 41 H 0.147 0.853 42 H 0.104 0.896 43 H 0.118 0.882 44 H 0.119 0.881 45 H 0.072 0.928 46 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.234 -28.875 18.157 34.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.125 4.125 3 C 0.318 3.682 4 O -0.436 6.436 5 N -0.363 5.363 6 C 0.048 3.952 7 C -0.114 4.114 8 C -0.120 4.120 9 C -0.136 4.136 10 C -0.087 4.087 11 C 0.060 3.940 12 N -0.381 5.381 13 C -0.380 4.380 14 H 0.096 0.904 15 C -0.269 4.269 16 N -0.620 5.620 17 Si 0.807 3.193 18 H -0.212 1.212 19 H -0.221 1.221 20 H -0.193 1.193 21 C -0.133 4.133 22 C -0.114 4.114 23 C -0.151 4.151 24 C -0.028 4.028 25 N -0.373 5.373 26 C 0.307 3.693 27 O -0.436 6.436 28 H 0.106 0.894 29 H 0.104 0.896 30 H 0.080 0.920 31 H 0.246 0.754 32 H 0.103 0.897 33 H 0.092 0.908 34 H 0.153 0.847 35 H 0.138 0.862 36 H 0.047 0.953 37 H 0.050 0.950 38 H 0.205 0.795 39 H 0.061 0.939 40 H 0.143 0.857 41 H 0.164 0.836 42 H 0.122 0.878 43 H 0.137 0.863 44 H 0.137 0.863 45 H 0.090 0.910 46 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -0.076 -28.428 18.125 33.714 hybrid contribution 0.212 0.882 -1.443 1.705 sum 0.136 -27.546 16.681 32.203 Atomic orbital electron populations 1.21733 0.88266 1.04835 1.03807 1.21691 1.00666 0.92320 0.97819 1.20118 0.79644 0.86805 0.81673 1.90693 1.39285 1.77257 1.36330 1.46138 1.53490 1.12620 1.24039 1.20136 0.99067 0.80877 0.95135 1.19816 0.95930 1.00585 0.95038 1.21174 0.99954 0.98784 0.92063 1.21158 0.95673 0.97599 0.99129 1.20180 0.95554 0.97021 0.95932 1.19757 0.96433 0.84539 0.93264 1.42535 1.61840 1.08749 1.25023 1.19673 1.25493 0.93064 0.99798 0.90375 1.25643 1.00889 0.99223 1.01098 1.69837 1.40630 1.17587 1.33920 0.85071 0.76807 0.78471 0.78966 1.21204 1.22133 1.19314 1.21200 1.00354 0.99211 0.92565 1.21220 0.95758 0.96197 0.98262 1.22806 0.97463 0.99458 0.95421 1.22353 0.98310 1.03619 0.78478 1.46231 1.35967 1.42841 1.12249 1.20621 0.80086 0.80055 0.88544 1.90776 1.62496 1.67619 1.22718 0.89357 0.89557 0.91967 0.75388 0.89682 0.90752 0.84652 0.86184 0.95333 0.95000 0.79485 0.93926 0.85686 0.83563 0.87755 0.86332 0.86276 0.90959 0.73894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.43 8.33 71.98 0.60 -0.83 16 2 C -0.12 -1.68 0.74 -52.93 -0.04 -1.72 16 3 C 0.53 10.58 6.55 87.66 0.57 11.16 16 4 O -0.56 -13.71 15.46 -3.03 -0.05 -13.76 16 5 N -0.71 -14.28 5.41 -466.79 -2.53 -16.81 16 6 C 0.17 3.62 5.80 85.63 0.50 4.12 16 7 C -0.11 -2.79 5.25 -19.87 -0.10 -2.89 16 8 C -0.10 -2.77 9.70 22.27 0.22 -2.55 16 9 C -0.12 -3.82 9.70 22.27 0.22 -3.60 16 10 C -0.09 -3.09 5.25 -19.86 -0.10 -3.19 16 11 C 0.19 7.86 6.38 85.63 0.55 8.41 16 12 N -0.74 -39.12 5.59 -347.18 -1.94 -41.07 16 13 C -0.25 -14.24 9.99 84.03 0.84 -13.40 16 14 H 0.08 4.26 7.83 -2.91 -0.02 4.24 16 15 C -0.08 -4.47 5.50 84.86 0.47 -4.01 16 16 N -0.97 -60.63 13.06 21.65 0.28 -60.34 16 17 Si 0.98 46.78 29.55 68.60 2.03 48.80 16 18 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 19 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 20 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 21 C -0.11 -3.60 9.70 22.27 0.22 -3.38 16 22 C -0.10 -2.45 9.70 22.27 0.22 -2.24 16 23 C -0.11 -0.93 6.05 31.65 0.19 -0.74 16 24 C 0.10 0.64 7.78 86.83 0.68 1.32 16 25 N -0.72 -8.15 6.24 -459.82 -2.87 -11.02 16 26 C 0.52 9.29 7.08 87.90 0.62 9.91 16 27 O -0.56 -14.22 17.69 -3.04 -0.05 -14.27 16 28 H 0.09 0.71 8.13 -2.38 -0.02 0.70 16 29 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.06 0.85 7.77 -2.39 -0.02 0.83 16 31 H 0.41 8.29 7.85 -92.71 -0.73 7.56 16 32 H 0.08 1.73 8.09 -2.39 -0.02 1.71 16 33 H 0.07 1.63 8.08 -2.39 -0.02 1.61 16 34 H 0.14 3.17 8.06 -2.92 -0.02 3.15 16 35 H 0.12 3.90 8.06 -2.91 -0.02 3.88 16 36 H 0.03 1.20 8.09 -2.39 -0.02 1.18 16 37 H 0.03 1.32 8.09 -2.39 -0.02 1.30 16 38 H 0.37 21.26 7.66 -92.72 -0.71 20.55 16 39 H 0.25 15.21 8.31 -92.71 -0.77 14.44 16 40 H 0.13 3.82 8.06 -2.91 -0.02 3.79 16 41 H 0.15 2.92 8.06 -2.91 -0.02 2.89 16 42 H 0.10 1.07 6.91 -2.39 -0.02 1.05 16 43 H 0.12 0.34 7.90 -2.38 -0.02 0.32 16 44 H 0.12 0.04 8.14 -2.39 -0.02 0.02 16 45 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 46 H 0.42 3.58 8.96 -92.70 -0.83 2.75 16 Total: -1.00 -75.51 388.16 -0.74 -76.25 By element: Atomic # 1 Polarization: 37.09 SS G_CDS: -1.24 Total: 35.85 kcal Atomic # 6 Polarization: -9.27 SS G_CDS: 5.63 Total: -3.64 kcal Atomic # 7 Polarization: -122.18 SS G_CDS: -7.06 Total: -129.24 kcal Atomic # 8 Polarization: -27.93 SS G_CDS: -0.10 Total: -28.03 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 2.03 Total: 48.80 kcal Total: -75.51 -0.74 -76.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568120396.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.245 kcal (2) G-P(sol) polarization free energy of solvation -75.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds