Wall clock time and date at job start Tue Mar 31 2020 17:17:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46500 * 110.27307 * 2 1 4 4 C 1.34779 * 120.00008 * 302.08746 * 3 2 1 5 5 O 1.21550 * 120.00001 * 0.02562 * 4 3 2 6 6 C 1.47847 * 120.00150 * 180.02562 * 4 3 2 7 7 C 1.39575 * 120.14487 * 180.02562 * 6 4 3 8 8 C 1.37955 * 119.85263 * 180.23372 * 7 6 4 9 9 C 1.38360 * 120.14134 * 359.51160 * 8 7 6 10 10 C 1.38356 * 120.29684 * 0.46801 * 9 8 7 11 11 C 1.37958 * 120.14408 * 359.79272 * 10 9 8 12 12 C 1.54595 * 110.39343 * 237.85224 * 2 1 3 13 13 C 1.54931 * 102.92290 * 219.08338 * 12 2 1 14 14 N 1.48535 * 103.22746 * 37.41520 * 13 12 2 15 15 C 1.46896 * 111.00140 * 200.27744 * 14 13 12 16 16 C 1.50698 * 109.47099 * 307.39613 * 15 14 13 17 17 O 1.21289 * 120.00428 * 0.02562 * 16 15 14 18 18 N 1.34781 * 119.99993 * 179.97438 * 16 15 14 19 19 C 1.37098 * 120.00187 * 179.97438 * 18 16 15 20 20 H 1.08005 * 119.99790 * 0.02562 * 19 18 16 21 21 C 1.38951 * 119.99937 * 180.02562 * 19 18 16 22 22 N 1.31409 * 120.00075 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99722 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47085 * 60.00177 * 23 21 19 25 25 H 1.48501 * 109.46842 * 179.97438 * 23 21 19 26 26 H 1.48505 * 109.46866 * 299.99924 * 23 21 19 27 27 C 1.47895 * 105.81833 * 320.79394 * 14 13 12 28 28 H 1.08999 * 109.46634 * 59.29924 * 1 2 3 29 29 H 1.09000 * 109.47022 * 179.30191 * 1 2 3 30 30 H 1.09001 * 109.46700 * 299.30334 * 1 2 3 31 31 H 0.96996 * 120.00359 * 122.09050 * 3 2 1 32 32 H 1.08002 * 120.07104 * 359.95155 * 7 6 4 33 33 H 1.07998 * 119.92975 * 179.72529 * 8 7 6 34 34 H 1.08003 * 119.85495 * 180.23565 * 9 8 7 35 35 H 1.08006 * 119.92876 * 179.76475 * 10 9 8 36 36 H 1.07997 * 120.07488 * 179.97438 * 11 10 9 37 37 H 1.09001 * 110.72575 * 337.44730 * 12 2 1 38 38 H 1.09004 * 110.72280 * 100.72226 * 12 2 1 39 39 H 1.08998 * 110.66726 * 278.97932 * 13 12 2 40 40 H 1.09005 * 110.81108 * 155.91468 * 13 12 2 41 41 H 1.09008 * 109.47052 * 67.39447 * 15 14 13 42 42 H 1.08997 * 109.47222 * 187.39165 * 15 14 13 43 43 H 0.96997 * 119.99934 * 0.02562 * 18 16 15 44 44 H 0.97001 * 119.99778 * 179.97438 * 22 21 19 45 45 H 1.09007 * 109.91924 * 265.97513 * 27 14 13 46 46 H 1.09007 * 110.08421 * 144.77641 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0376 1.3742 0.0000 4 6 1.6895 2.2212 -0.9889 5 8 0.9540 1.8450 -1.8805 6 6 2.2022 3.6080 -0.9893 7 6 1.8432 4.4878 -2.0116 8 6 2.3290 5.7789 -2.0085 9 6 3.1622 6.2054 -0.9896 10 6 3.5216 5.3385 0.0271 11 6 3.0471 4.0431 0.0330 12 6 2.0687 -0.7710 -1.2269 13 6 3.2882 -1.5326 -0.6495 14 7 2.8333 -1.9216 0.7100 15 6 3.9768 -2.2224 1.5817 16 6 4.8700 -3.2321 0.9082 17 8 4.5826 -3.6588 -0.1902 18 7 5.9888 -3.6602 1.5259 19 6 6.8011 -4.5792 0.9134 20 1 6.5447 -4.9598 -0.0644 21 6 7.9542 -5.0210 1.5505 22 7 8.2659 -4.5583 2.7403 23 14 9.0614 -6.2726 0.7155 24 1 9.5526 -5.7183 -0.5716 25 1 10.2177 -6.5762 1.5966 26 1 8.2944 -7.5178 0.4577 27 6 2.0645 -0.7672 1.2235 28 1 -0.3632 0.5247 -0.8836 29 1 -0.3633 -1.0276 -0.0125 30 1 -0.3633 0.5030 0.8962 31 1 2.6243 1.6746 0.7116 32 1 1.1902 4.1570 -2.8057 33 1 2.0556 6.4594 -2.8014 34 1 3.5368 7.2183 -0.9898 35 1 4.1755 5.6765 0.8175 36 1 3.3287 3.3672 0.8269 37 1 1.3207 -1.4691 -1.6027 38 1 2.3809 -0.0801 -2.0100 39 1 4.1581 -0.8784 -0.5916 40 1 3.5118 -2.4159 -1.2477 41 1 4.5398 -1.3083 1.7709 42 1 3.6163 -2.6292 2.5265 43 1 6.2188 -3.3187 2.4041 44 1 9.0707 -4.8670 3.1852 45 1 2.7148 -0.1203 1.8125 46 1 1.2327 -1.1144 1.8366 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001671609157.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:17:55 Heat of formation + Delta-G solvation = -28.022964 kcal Electronic energy + Delta-G solvation = -27991.699031 eV Core-core repulsion = 24074.486182 eV Total energy + Delta-G solvation = -3917.212849 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.80640 -39.42507 -38.44133 -37.40710 -34.67689 -33.83019 -32.39740 -31.32629 -31.27981 -30.57962 -29.46751 -27.51257 -25.42618 -24.39711 -23.69998 -22.85763 -21.61393 -20.74963 -19.66089 -19.17301 -18.33669 -17.88812 -16.47458 -16.36439 -15.95367 -15.49989 -15.38869 -14.90992 -14.85902 -14.57343 -14.44374 -14.12220 -13.94124 -13.79357 -13.42565 -13.36689 -13.07582 -12.98041 -12.47571 -12.32209 -12.05244 -11.98758 -11.77371 -11.55898 -11.46629 -11.25171 -11.13245 -10.93162 -10.78518 -10.75630 -10.44455 -10.23977 -9.85751 -9.51109 -9.39296 -9.34909 -9.11398 -8.40209 -8.04544 -7.92649 -6.44427 -3.85269 0.53206 0.99537 2.66004 2.92021 3.18469 3.24425 3.28882 3.57765 3.86322 4.06913 4.26518 4.33857 4.43393 4.54345 4.56741 4.77892 4.78931 4.94166 4.99855 5.08792 5.11846 5.22358 5.37350 5.42046 5.53847 5.58150 5.60173 5.66985 5.71081 5.83220 5.89186 5.93768 5.98471 6.01921 6.07069 6.12672 6.21892 6.27006 6.31957 6.47776 6.52765 6.70685 7.18351 7.24099 7.36135 7.52829 8.03032 8.05540 8.58681 9.15222 9.50560 10.02364 10.73179 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.015623 B = 0.002450 C = 0.002262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.791899 B =11427.682013 C =12377.075723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.164 3.836 3 N -0.715 5.715 4 C 0.559 3.441 5 O -0.529 6.529 6 C -0.133 4.133 7 C -0.061 4.061 8 C -0.129 4.129 9 C -0.097 4.097 10 C -0.127 4.127 11 C -0.087 4.087 12 C -0.123 4.123 13 C 0.038 3.962 14 N -0.491 5.491 15 C 0.036 3.964 16 C 0.441 3.559 17 O -0.579 6.579 18 N -0.561 5.561 19 C -0.299 4.299 20 H 0.103 0.897 21 C 0.023 3.977 22 N -0.902 5.902 23 Si 0.931 3.069 24 H -0.274 1.274 25 H -0.284 1.284 26 H -0.273 1.273 27 C 0.034 3.966 28 H 0.079 0.921 29 H 0.070 0.930 30 H 0.052 0.948 31 H 0.396 0.604 32 H 0.136 0.864 33 H 0.129 0.871 34 H 0.126 0.874 35 H 0.129 0.871 36 H 0.125 0.875 37 H 0.082 0.918 38 H 0.074 0.926 39 H 0.033 0.967 40 H 0.120 0.880 41 H 0.047 0.953 42 H 0.091 0.909 43 H 0.392 0.608 44 H 0.272 0.728 45 H 0.046 0.954 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.459 21.019 -1.364 23.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.078 3.922 3 N -0.368 5.368 4 C 0.347 3.653 5 O -0.407 6.407 6 C -0.137 4.137 7 C -0.080 4.080 8 C -0.147 4.147 9 C -0.115 4.115 10 C -0.145 4.145 11 C -0.106 4.106 12 C -0.162 4.162 13 C -0.089 4.089 14 N -0.215 5.215 15 C -0.096 4.096 16 C 0.227 3.773 17 O -0.464 6.464 18 N -0.197 5.197 19 C -0.429 4.429 20 H 0.121 0.879 21 C -0.179 4.179 22 N -0.543 5.543 23 Si 0.758 3.242 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.198 1.198 27 C -0.095 4.095 28 H 0.098 0.902 29 H 0.089 0.911 30 H 0.071 0.929 31 H 0.232 0.768 32 H 0.154 0.846 33 H 0.147 0.853 34 H 0.144 0.856 35 H 0.147 0.853 36 H 0.143 0.857 37 H 0.101 0.899 38 H 0.093 0.907 39 H 0.052 0.948 40 H 0.138 0.862 41 H 0.065 0.935 42 H 0.109 0.891 43 H 0.225 0.775 44 H 0.082 0.918 45 H 0.064 0.936 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -12.316 19.893 -2.603 23.541 hybrid contribution 1.759 0.564 0.886 2.049 sum -10.557 20.457 -1.717 23.084 Atomic orbital electron populations 1.22169 0.93171 1.02967 1.02957 1.21226 0.94636 0.80021 0.96314 1.46211 1.51149 1.12149 1.27274 1.18229 0.80498 0.84829 0.81770 1.90740 1.36274 1.77559 1.36133 1.20047 1.01454 0.94362 0.97794 1.21311 0.97147 0.92581 0.96931 1.21187 0.98368 0.95990 0.99145 1.21394 0.96487 0.99783 0.93853 1.21136 1.00551 0.93566 0.99278 1.21346 0.95642 0.96371 0.97220 1.22928 0.98496 0.98452 0.96353 1.23527 0.94497 1.00384 0.90529 1.64665 1.20605 1.33748 1.02515 1.22118 0.91772 0.98381 0.97283 1.19680 0.83433 0.86538 0.87645 1.90444 1.73856 1.60878 1.21204 1.41840 1.20139 1.38666 1.19103 1.19656 1.02124 1.17902 1.03219 0.87920 1.25265 0.97957 0.98770 0.95893 1.69602 1.26740 1.44204 1.13763 0.85917 0.79014 0.80523 0.78775 1.19907 1.20966 1.19825 1.23256 0.98904 0.91859 0.95445 0.90238 0.91070 0.92913 0.76776 0.84595 0.85312 0.85579 0.85330 0.85695 0.89902 0.90693 0.94833 0.86192 0.93478 0.89118 0.77472 0.91791 0.93610 0.89098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 8.12 37.16 0.30 -1.50 16 2 C 0.16 2.03 0.94 -130.46 -0.12 1.91 16 3 N -0.72 -7.84 5.10 -47.28 -0.24 -8.08 16 4 C 0.56 6.88 6.96 -12.33 -0.09 6.80 16 5 O -0.53 -8.00 13.25 5.32 0.07 -7.93 16 6 C -0.13 -1.38 5.87 -104.97 -0.62 -2.00 16 7 C -0.06 -0.58 9.60 -39.19 -0.38 -0.96 16 8 C -0.13 -0.97 10.03 -39.64 -0.40 -1.37 16 9 C -0.10 -0.66 10.04 -39.49 -0.40 -1.05 16 10 C -0.13 -0.91 10.03 -39.64 -0.40 -1.30 16 11 C -0.09 -0.72 9.54 -39.18 -0.37 -1.09 16 12 C -0.12 -1.83 5.85 -24.87 -0.15 -1.97 16 13 C 0.04 0.65 5.31 -1.90 -0.01 0.64 16 14 N -0.49 -8.16 5.26 -231.89 -1.22 -9.38 16 15 C 0.04 0.64 5.52 -4.98 -0.03 0.61 16 16 C 0.44 10.27 7.49 -10.98 -0.08 10.19 16 17 O -0.58 -15.26 13.09 5.55 0.07 -15.19 16 18 N -0.56 -14.06 5.29 -10.96 -0.06 -14.12 16 19 C -0.30 -8.27 9.68 -14.93 -0.14 -8.42 16 20 H 0.10 2.97 7.16 -52.48 -0.38 2.59 16 21 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 22 N -0.90 -24.33 13.05 55.50 0.72 -23.61 16 23 Si 0.93 20.96 29.55 -169.99 -5.02 15.93 16 24 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 25 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 26 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 27 C 0.03 0.43 6.16 -2.76 -0.02 0.41 16 28 H 0.08 1.05 6.07 -51.93 -0.32 0.74 16 29 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.40 3.45 6.12 -40.82 -0.25 3.20 16 32 H 0.14 1.32 7.65 -52.49 -0.40 0.92 16 33 H 0.13 0.68 8.06 -52.49 -0.42 0.25 16 34 H 0.13 0.55 8.06 -52.48 -0.42 0.13 16 35 H 0.13 0.64 8.06 -52.48 -0.42 0.22 16 36 H 0.13 0.80 6.41 -52.49 -0.34 0.46 16 37 H 0.08 1.24 7.86 -51.93 -0.41 0.83 16 38 H 0.07 1.17 6.81 -51.93 -0.35 0.81 16 39 H 0.03 0.60 8.02 -51.93 -0.42 0.18 16 40 H 0.12 2.50 5.96 -51.93 -0.31 2.19 16 41 H 0.05 0.75 7.81 -51.92 -0.41 0.34 16 42 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 43 H 0.39 9.38 7.90 -40.82 -0.32 9.06 16 44 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 45 H 0.05 0.50 6.89 -51.92 -0.36 0.14 16 46 H 0.09 1.04 7.68 -51.93 -0.40 0.64 16 LS Contribution 371.79 15.07 5.60 5.60 Total: -1.00 -32.38 371.79 -9.38 -41.76 By element: Atomic # 1 Polarization: 19.92 SS G_CDS: -6.32 Total: 13.59 kcal Atomic # 6 Polarization: 4.39 SS G_CDS: -2.99 Total: 1.40 kcal Atomic # 7 Polarization: -54.38 SS G_CDS: -0.79 Total: -55.18 kcal Atomic # 8 Polarization: -23.26 SS G_CDS: 0.14 Total: -23.12 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.38 -9.38 -41.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671609157.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.742 kcal (2) G-P(sol) polarization free energy of solvation -32.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds