Wall clock time and date at job start Tue Mar 31 2020 17:17:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46500 * 110.27307 * 2 1 4 4 C 1.34779 * 120.00008 * 302.08746 * 3 2 1 5 5 O 1.21550 * 120.00001 * 0.02562 * 4 3 2 6 6 C 1.47847 * 120.00150 * 180.02562 * 4 3 2 7 7 C 1.39575 * 120.14487 * 180.02562 * 6 4 3 8 8 C 1.37955 * 119.85263 * 180.23372 * 7 6 4 9 9 C 1.38360 * 120.14134 * 359.51160 * 8 7 6 10 10 C 1.38356 * 120.29684 * 0.46801 * 9 8 7 11 11 C 1.37958 * 120.14408 * 359.79272 * 10 9 8 12 12 C 1.54595 * 110.39343 * 237.85224 * 2 1 3 13 13 C 1.54931 * 102.92290 * 219.08338 * 12 2 1 14 14 N 1.48535 * 103.22746 * 37.41520 * 13 12 2 15 15 C 1.46896 * 111.00140 * 200.27744 * 14 13 12 16 16 C 1.50698 * 109.47099 * 307.39613 * 15 14 13 17 17 O 1.21289 * 120.00428 * 0.02562 * 16 15 14 18 18 N 1.34781 * 119.99993 * 179.97438 * 16 15 14 19 19 C 1.37098 * 120.00187 * 179.97438 * 18 16 15 20 20 H 1.08005 * 119.99790 * 0.02562 * 19 18 16 21 21 C 1.38951 * 119.99937 * 180.02562 * 19 18 16 22 22 N 1.31409 * 120.00075 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99722 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47085 * 60.00177 * 23 21 19 25 25 H 1.48501 * 109.46842 * 179.97438 * 23 21 19 26 26 H 1.48505 * 109.46866 * 299.99924 * 23 21 19 27 27 C 1.47895 * 105.81833 * 320.79394 * 14 13 12 28 28 H 1.08999 * 109.46634 * 59.29924 * 1 2 3 29 29 H 1.09000 * 109.47022 * 179.30191 * 1 2 3 30 30 H 1.09001 * 109.46700 * 299.30334 * 1 2 3 31 31 H 0.96996 * 120.00359 * 122.09050 * 3 2 1 32 32 H 1.08002 * 120.07104 * 359.95155 * 7 6 4 33 33 H 1.07998 * 119.92975 * 179.72529 * 8 7 6 34 34 H 1.08003 * 119.85495 * 180.23565 * 9 8 7 35 35 H 1.08006 * 119.92876 * 179.76475 * 10 9 8 36 36 H 1.07997 * 120.07488 * 179.97438 * 11 10 9 37 37 H 1.09001 * 110.72575 * 337.44730 * 12 2 1 38 38 H 1.09004 * 110.72280 * 100.72226 * 12 2 1 39 39 H 1.08998 * 110.66726 * 278.97932 * 13 12 2 40 40 H 1.09005 * 110.81108 * 155.91468 * 13 12 2 41 41 H 1.09008 * 109.47052 * 67.39447 * 15 14 13 42 42 H 1.08997 * 109.47222 * 187.39165 * 15 14 13 43 43 H 0.96997 * 119.99934 * 0.02562 * 18 16 15 44 44 H 0.97001 * 119.99778 * 179.97438 * 22 21 19 45 45 H 1.09007 * 109.91924 * 265.97513 * 27 14 13 46 46 H 1.09007 * 110.08421 * 144.77641 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0376 1.3742 0.0000 4 6 1.6895 2.2212 -0.9889 5 8 0.9540 1.8450 -1.8805 6 6 2.2022 3.6080 -0.9893 7 6 1.8432 4.4878 -2.0116 8 6 2.3290 5.7789 -2.0085 9 6 3.1622 6.2054 -0.9896 10 6 3.5216 5.3385 0.0271 11 6 3.0471 4.0431 0.0330 12 6 2.0687 -0.7710 -1.2269 13 6 3.2882 -1.5326 -0.6495 14 7 2.8333 -1.9216 0.7100 15 6 3.9768 -2.2224 1.5817 16 6 4.8700 -3.2321 0.9082 17 8 4.5826 -3.6588 -0.1902 18 7 5.9888 -3.6602 1.5259 19 6 6.8011 -4.5792 0.9134 20 1 6.5447 -4.9598 -0.0644 21 6 7.9542 -5.0210 1.5505 22 7 8.2659 -4.5583 2.7403 23 14 9.0614 -6.2726 0.7155 24 1 9.5526 -5.7183 -0.5716 25 1 10.2177 -6.5762 1.5966 26 1 8.2944 -7.5178 0.4577 27 6 2.0645 -0.7672 1.2235 28 1 -0.3632 0.5247 -0.8836 29 1 -0.3633 -1.0276 -0.0125 30 1 -0.3633 0.5030 0.8962 31 1 2.6243 1.6746 0.7116 32 1 1.1902 4.1570 -2.8057 33 1 2.0556 6.4594 -2.8014 34 1 3.5368 7.2183 -0.9898 35 1 4.1755 5.6765 0.8175 36 1 3.3287 3.3672 0.8269 37 1 1.3207 -1.4691 -1.6027 38 1 2.3809 -0.0801 -2.0100 39 1 4.1581 -0.8784 -0.5916 40 1 3.5118 -2.4159 -1.2477 41 1 4.5398 -1.3083 1.7709 42 1 3.6163 -2.6292 2.5265 43 1 6.2188 -3.3187 2.4041 44 1 9.0707 -4.8670 3.1852 45 1 2.7148 -0.1203 1.8125 46 1 1.2327 -1.1144 1.8366 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001671609157.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:17:54 Heat of formation + Delta-G solvation = -51.413412 kcal Electronic energy + Delta-G solvation = -27992.713317 eV Core-core repulsion = 24074.486182 eV Total energy + Delta-G solvation = -3918.227135 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.78567 -40.59744 -39.66081 -38.66279 -36.15720 -35.47830 -33.46110 -33.18166 -31.88583 -31.52583 -30.58825 -28.90252 -26.92945 -25.63713 -24.80604 -23.46865 -22.84565 -21.69254 -21.12785 -20.52182 -19.85533 -19.13187 -17.85350 -17.28967 -17.08614 -16.80003 -16.35701 -16.30581 -16.03761 -15.86862 -15.69596 -15.49601 -15.10655 -14.77432 -14.61807 -14.32576 -14.21744 -14.08361 -13.71709 -13.52044 -13.43873 -13.15120 -13.00744 -12.92884 -12.57743 -12.45441 -12.41821 -12.30001 -12.12441 -12.04251 -11.99536 -11.91638 -11.47099 -10.82985 -10.29622 -10.13601 -10.00924 -9.95643 -9.86789 -9.36818 -8.47311 -5.95554 -0.13535 0.41060 1.38766 1.41064 1.51558 1.85428 2.01828 2.04010 2.28500 2.86180 2.91085 3.19453 3.24254 3.46041 3.69022 3.73809 3.89759 3.91975 4.01947 4.21647 4.24290 4.27732 4.31521 4.46199 4.47204 4.48779 4.53324 4.60735 4.74912 4.80397 4.84921 4.88497 4.95498 5.04694 5.07843 5.23438 5.28263 5.36591 5.40626 5.44772 5.48672 5.51078 5.81318 5.92054 5.94766 6.08950 6.49004 6.60406 7.12662 7.16517 7.55136 8.11618 8.69852 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.015623 B = 0.002450 C = 0.002262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.791899 B =11427.682013 C =12377.075723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.170 3.830 3 N -0.706 5.706 4 C 0.556 3.444 5 O -0.567 6.567 6 C -0.157 4.157 7 C -0.080 4.080 8 C -0.132 4.132 9 C -0.093 4.093 10 C -0.130 4.130 11 C -0.090 4.090 12 C -0.116 4.116 13 C 0.045 3.955 14 N -0.507 5.507 15 C 0.048 3.952 16 C 0.437 3.563 17 O -0.615 6.615 18 N -0.571 5.571 19 C -0.332 4.332 20 H 0.078 0.922 21 C -0.011 4.011 22 N -0.919 5.919 23 Si 0.990 3.010 24 H -0.273 1.273 25 H -0.270 1.270 26 H -0.273 1.273 27 C 0.038 3.962 28 H 0.060 0.940 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.410 0.590 32 H 0.123 0.877 33 H 0.149 0.851 34 H 0.155 0.845 35 H 0.155 0.845 36 H 0.143 0.857 37 H 0.076 0.924 38 H 0.062 0.938 39 H 0.026 0.974 40 H 0.078 0.922 41 H 0.073 0.927 42 H 0.116 0.884 43 H 0.397 0.603 44 H 0.278 0.722 45 H 0.073 0.927 46 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.065 23.062 0.609 25.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.084 3.916 3 N -0.359 5.359 4 C 0.345 3.655 5 O -0.447 6.447 6 C -0.160 4.160 7 C -0.099 4.099 8 C -0.150 4.150 9 C -0.111 4.111 10 C -0.148 4.148 11 C -0.109 4.109 12 C -0.155 4.155 13 C -0.082 4.082 14 N -0.231 5.231 15 C -0.084 4.084 16 C 0.225 3.775 17 O -0.502 6.502 18 N -0.209 5.209 19 C -0.462 4.462 20 H 0.096 0.904 21 C -0.211 4.211 22 N -0.560 5.560 23 Si 0.814 3.186 24 H -0.198 1.198 25 H -0.194 1.194 26 H -0.198 1.198 27 C -0.090 4.090 28 H 0.079 0.921 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.248 0.752 32 H 0.141 0.859 33 H 0.167 0.833 34 H 0.173 0.827 35 H 0.173 0.827 36 H 0.160 0.840 37 H 0.095 0.905 38 H 0.081 0.919 39 H 0.044 0.956 40 H 0.096 0.904 41 H 0.091 0.909 42 H 0.134 0.866 43 H 0.231 0.769 44 H 0.087 0.913 45 H 0.091 0.909 46 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -11.918 21.963 -0.586 24.995 hybrid contribution 1.608 0.011 0.232 1.625 sum -10.309 21.974 -0.354 24.275 Atomic orbital electron populations 1.22099 0.92381 1.03109 1.03039 1.21093 0.95152 0.80493 0.94893 1.46080 1.51086 1.11319 1.27439 1.18619 0.79864 0.85721 0.81264 1.90719 1.38048 1.78396 1.37549 1.20004 1.03256 0.93369 0.99367 1.21384 0.97871 0.93783 0.96904 1.21454 0.98143 0.95303 1.00077 1.21802 0.95277 1.01068 0.92948 1.21515 1.00332 0.92987 0.99922 1.21579 0.94948 0.97410 0.96914 1.22796 0.97340 0.98141 0.97219 1.23227 0.95298 0.98583 0.91131 1.64622 1.20274 1.36289 1.01962 1.22040 0.91356 0.97606 0.97362 1.20756 0.83149 0.86472 0.87152 1.90451 1.74586 1.62162 1.22977 1.41898 1.20737 1.38847 1.19372 1.19600 1.03773 1.19792 1.03040 0.90430 1.25999 0.98598 1.00099 0.96437 1.69656 1.27215 1.44772 1.14369 0.85029 0.77482 0.78094 0.77986 1.19830 1.19396 1.19784 1.23331 0.99346 0.90833 0.95466 0.92104 0.90837 0.90906 0.75219 0.85939 0.83312 0.82712 0.82747 0.83955 0.90545 0.91927 0.95582 0.90398 0.90885 0.86613 0.76930 0.91268 0.90937 0.87048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.28 8.12 71.98 0.58 -2.69 16 2 C 0.17 4.00 0.94 4.48 0.00 4.01 16 3 N -0.71 -14.52 5.10 -421.77 -2.15 -16.67 16 4 C 0.56 13.68 6.96 86.79 0.60 14.29 16 5 O -0.57 -17.81 13.25 -3.87 -0.05 -17.86 16 6 C -0.16 -3.17 5.87 -20.09 -0.12 -3.28 16 7 C -0.08 -1.55 9.60 22.53 0.22 -1.33 16 8 C -0.13 -1.78 10.03 22.23 0.22 -1.55 16 9 C -0.09 -0.98 10.04 22.33 0.22 -0.76 16 10 C -0.13 -1.45 10.03 22.23 0.22 -1.22 16 11 C -0.09 -1.30 9.54 22.53 0.21 -1.08 16 12 C -0.12 -3.52 5.85 31.80 0.19 -3.33 16 13 C 0.05 1.61 5.31 86.65 0.46 2.07 16 14 N -0.51 -16.22 5.26 -887.58 -4.67 -20.89 16 15 C 0.05 1.59 5.52 85.56 0.47 2.06 16 16 C 0.44 20.56 7.49 87.66 0.66 21.21 16 17 O -0.62 -33.66 13.09 -3.06 -0.04 -33.70 16 18 N -0.57 -28.96 5.29 -306.98 -1.62 -30.59 16 19 C -0.33 -18.79 9.68 84.04 0.81 -17.97 16 20 H 0.08 4.69 7.16 -2.91 -0.02 4.67 16 21 C -0.01 -0.61 5.50 84.93 0.47 -0.14 16 22 N -0.92 -49.11 13.05 21.66 0.28 -48.83 16 23 Si 0.99 42.87 29.55 68.60 2.03 44.90 16 24 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 25 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 26 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 27 C 0.04 0.84 6.16 86.45 0.53 1.37 16 28 H 0.06 1.62 6.07 -2.39 -0.01 1.60 16 29 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.41 6.10 6.12 -92.71 -0.57 5.53 16 32 H 0.12 2.57 7.65 -2.91 -0.02 2.55 16 33 H 0.15 1.29 8.06 -2.91 -0.02 1.27 16 34 H 0.16 0.73 8.06 -2.91 -0.02 0.71 16 35 H 0.15 0.90 8.06 -2.91 -0.02 0.88 16 36 H 0.14 1.41 6.41 -2.91 -0.02 1.40 16 37 H 0.08 2.39 7.86 -2.39 -0.02 2.37 16 38 H 0.06 2.05 6.81 -2.38 -0.02 2.03 16 39 H 0.03 0.94 8.02 -2.39 -0.02 0.92 16 40 H 0.08 3.46 5.96 -2.38 -0.01 3.44 16 41 H 0.07 2.09 7.81 -2.38 -0.02 2.08 16 42 H 0.12 3.35 8.14 -2.39 -0.02 3.33 16 43 H 0.40 18.96 7.90 -92.71 -0.73 18.22 16 44 H 0.28 13.93 8.31 -92.71 -0.77 13.16 16 45 H 0.07 1.26 6.89 -2.38 -0.02 1.25 16 46 H 0.11 2.10 7.68 -2.38 -0.02 2.08 16 Total: -1.00 -73.20 371.79 -0.74 -73.94 By element: Atomic # 1 Polarization: 38.34 SS G_CDS: -0.28 Total: 38.06 kcal Atomic # 6 Polarization: 5.87 SS G_CDS: 5.76 Total: 11.64 kcal Atomic # 7 Polarization: -108.82 SS G_CDS: -8.16 Total: -116.98 kcal Atomic # 8 Polarization: -51.47 SS G_CDS: -0.09 Total: -51.56 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.90 kcal Total: -73.20 -0.74 -73.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671609157.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.526 kcal (2) G-P(sol) polarization free energy of solvation -73.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds