Wall clock time and date at job start Tue Mar 31 2020 17:17:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46501 * 110.36747 * 2 1 4 4 C 1.34774 * 119.99874 * 60.73153 * 3 2 1 5 5 O 1.21548 * 119.99926 * 0.02562 * 4 3 2 6 6 C 1.47853 * 119.99930 * 179.97438 * 4 3 2 7 7 C 1.39572 * 120.14467 * 359.72590 * 6 4 3 8 8 C 1.37958 * 119.85334 * 179.78325 * 7 6 4 9 9 C 1.38358 * 120.14164 * 0.49117 * 8 7 6 10 10 C 1.38357 * 120.29647 * 359.74232 * 9 8 7 11 11 C 1.37963 * 120.14426 * 0.02562 * 10 9 8 12 12 C 1.54261 * 110.32679 * 122.18389 * 2 1 3 13 13 C 1.54386 * 105.05979 * 118.89484 * 12 2 1 14 14 N 1.48562 * 104.59336 * 23.85250 * 13 12 2 15 15 C 1.46894 * 111.00080 * 200.95721 * 14 13 12 16 16 C 1.50704 * 109.47459 * 176.47495 * 15 14 13 17 17 O 1.21286 * 119.99443 * 6.03595 * 16 15 14 18 18 N 1.34774 * 119.99755 * 185.76454 * 16 15 14 19 19 C 1.37100 * 119.99752 * 180.27672 * 18 16 15 20 20 H 1.08004 * 119.99871 * 359.97438 * 19 18 16 21 21 C 1.38941 * 120.00285 * 180.02562 * 19 18 16 22 22 N 1.31414 * 119.99983 * 179.97438 * 21 19 18 23 23 Si 1.86798 * 120.00099 * 359.97438 * 21 19 18 24 24 H 1.48501 * 109.46797 * 90.00148 * 23 21 19 25 25 H 1.48500 * 109.47399 * 210.00472 * 23 21 19 26 26 H 1.48509 * 109.46988 * 330.00565 * 23 21 19 27 27 C 1.48554 * 104.22381 * 320.51889 * 14 13 12 28 28 H 1.09002 * 109.46649 * 299.27007 * 1 2 3 29 29 H 1.09000 * 109.47203 * 59.26802 * 1 2 3 30 30 H 1.09002 * 109.47281 * 179.27156 * 1 2 3 31 31 H 0.97001 * 120.00210 * 240.72957 * 3 2 1 32 32 H 1.08000 * 120.07341 * 0.02562 * 7 6 4 33 33 H 1.07996 * 119.93084 * 180.22773 * 8 7 6 34 34 H 1.08006 * 119.85524 * 179.71600 * 9 8 7 35 35 H 1.08002 * 119.93328 * 179.97438 * 10 9 8 36 36 H 1.07997 * 120.07675 * 179.97438 * 11 10 9 37 37 H 1.08995 * 110.32142 * 0.02562 * 12 2 1 38 38 H 1.09001 * 110.32451 * 237.78841 * 12 2 1 39 39 H 1.08993 * 110.40941 * 265.07800 * 13 12 2 40 40 H 1.09002 * 110.40835 * 142.62779 * 13 12 2 41 41 H 1.09000 * 109.47053 * 56.47520 * 15 14 13 42 42 H 1.09003 * 109.47477 * 296.47744 * 15 14 13 43 43 H 0.96995 * 120.00181 * 0.27214 * 18 16 15 44 44 H 0.97005 * 119.99466 * 179.97438 * 22 21 19 45 45 H 1.09003 * 110.41617 * 158.26074 * 27 14 13 46 46 H 1.09006 * 110.41252 * 280.70160 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0398 1.3734 0.0000 4 6 1.7394 2.2037 1.0182 5 8 1.0458 1.8129 1.9367 6 6 2.2544 3.5897 1.0185 7 6 3.0567 4.0395 -0.0313 8 6 3.5304 5.3352 -0.0272 9 6 3.2200 6.1850 1.0196 10 6 2.4292 5.7440 2.0658 11 6 1.9452 4.4520 2.0715 12 6 2.0658 -0.7705 1.2243 13 6 2.8807 -1.9422 0.6356 14 7 3.2693 -1.4828 -0.7227 15 6 3.6068 -2.6215 -1.5871 16 6 3.9111 -2.1245 -2.9769 17 8 3.9601 -0.9329 -3.1974 18 7 4.1342 -3.0041 -3.9733 19 6 4.4167 -2.5520 -5.2364 20 1 4.4600 -1.4908 -5.4329 21 6 4.6462 -3.4587 -6.2638 22 7 4.9164 -3.0252 -7.4746 23 14 4.5706 -5.2940 -5.9240 24 1 3.1841 -5.7804 -6.1391 25 1 5.4934 -6.0062 -6.8440 26 1 4.9741 -5.5543 -4.5187 27 6 2.0662 -0.7710 -1.2253 28 1 -0.3633 0.5025 0.8965 29 1 -0.3633 0.5252 -0.8833 30 1 -0.3634 -1.0276 -0.0131 31 1 2.5937 1.6852 -0.7328 32 1 3.3030 3.3758 -0.8470 33 1 4.1482 5.6857 -0.8406 34 1 3.5971 7.1971 1.0204 35 1 2.1910 6.4122 2.8801 36 1 1.3284 4.1088 2.8888 37 1 1.2388 -1.1490 1.8249 38 1 2.7083 -0.1268 1.8252 39 1 2.2648 -2.8392 0.5717 40 1 3.7672 -2.1308 1.2412 41 1 2.7638 -3.3116 -1.6245 42 1 4.4800 -3.1361 -1.1859 43 1 4.0950 -3.9571 -3.7968 44 1 5.0770 -3.6583 -8.1917 45 1 2.3393 -0.0777 -2.0209 46 1 1.3228 -1.4848 -1.5805 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001671609158.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:17:58 Heat of formation + Delta-G solvation = -25.847631 kcal Electronic energy + Delta-G solvation = -28171.873893 eV Core-core repulsion = 24254.755374 eV Total energy + Delta-G solvation = -3917.118520 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.68052 -39.39730 -38.42915 -37.48581 -34.66194 -33.94307 -32.34563 -31.70184 -31.14427 -30.60526 -29.47935 -27.57351 -25.58439 -24.24449 -23.67849 -22.72332 -21.39525 -20.91320 -19.43228 -19.36355 -18.29994 -18.19245 -16.58652 -16.28528 -15.71495 -15.48019 -15.33079 -15.10516 -14.95047 -14.66785 -14.63624 -13.98026 -13.79255 -13.67097 -13.37093 -13.16410 -13.03143 -12.85301 -12.54822 -12.45641 -12.21084 -12.04125 -11.87966 -11.85422 -11.53779 -11.34418 -11.31797 -11.05506 -10.86261 -10.79911 -10.62303 -10.01751 -9.77176 -9.59215 -9.26382 -9.21627 -9.00035 -8.62651 -8.24955 -8.14951 -6.35372 -3.86905 0.67126 1.13885 2.79118 2.99626 3.03572 3.11243 3.12319 3.68462 3.71527 3.97688 4.06857 4.40551 4.57176 4.58787 4.66559 4.71710 4.87520 4.90946 5.09370 5.14643 5.16872 5.22090 5.26187 5.38385 5.55082 5.57655 5.61968 5.66658 5.72817 5.74369 5.75870 5.82964 5.89558 5.95520 6.07106 6.09852 6.16292 6.20533 6.22299 6.31479 6.58362 6.65960 6.97682 7.05798 7.53341 7.55131 8.09411 8.20237 8.55326 8.90420 9.37842 9.77693 10.77587 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.016622 B = 0.002665 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.131977 B =10502.648626 C =11701.907901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.171 3.829 3 N -0.704 5.704 4 C 0.559 3.441 5 O -0.540 6.540 6 C -0.134 4.134 7 C -0.084 4.084 8 C -0.127 4.127 9 C -0.098 4.098 10 C -0.132 4.132 11 C -0.063 4.063 12 C -0.117 4.117 13 C 0.027 3.973 14 N -0.484 5.484 15 C 0.031 3.969 16 C 0.452 3.548 17 O -0.563 6.563 18 N -0.590 5.590 19 C -0.305 4.305 20 H 0.120 0.880 21 C 0.042 3.958 22 N -0.880 5.880 23 Si 0.879 3.121 24 H -0.271 1.271 25 H -0.276 1.276 26 H -0.269 1.269 27 C 0.034 3.966 28 H 0.078 0.922 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.405 0.595 32 H 0.130 0.870 33 H 0.130 0.870 34 H 0.125 0.875 35 H 0.127 0.873 36 H 0.134 0.866 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.044 0.956 40 H 0.081 0.919 41 H 0.050 0.950 42 H 0.094 0.906 43 H 0.370 0.630 44 H 0.274 0.726 45 H 0.110 0.890 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.183 9.474 18.317 21.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.085 3.915 3 N -0.356 5.356 4 C 0.347 3.653 5 O -0.419 6.419 6 C -0.137 4.137 7 C -0.102 4.102 8 C -0.145 4.145 9 C -0.116 4.116 10 C -0.150 4.150 11 C -0.081 4.081 12 C -0.156 4.156 13 C -0.101 4.101 14 N -0.208 5.208 15 C -0.101 4.101 16 C 0.237 3.763 17 O -0.445 6.445 18 N -0.229 5.229 19 C -0.433 4.433 20 H 0.138 0.862 21 C -0.161 4.161 22 N -0.520 5.520 23 Si 0.705 3.295 24 H -0.196 1.196 25 H -0.201 1.201 26 H -0.195 1.195 27 C -0.094 4.094 28 H 0.096 0.904 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.242 0.758 32 H 0.148 0.852 33 H 0.148 0.852 34 H 0.143 0.857 35 H 0.145 0.855 36 H 0.152 0.848 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.062 0.938 40 H 0.100 0.900 41 H 0.068 0.932 42 H 0.112 0.888 43 H 0.203 0.797 44 H 0.084 0.916 45 H 0.128 0.872 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.105 10.257 18.558 22.065 hybrid contribution -0.267 -2.033 -0.451 2.100 sum -6.372 8.224 18.107 20.883 Atomic orbital electron populations 1.22192 0.93648 1.02396 1.03370 1.21057 0.93616 0.81093 0.95732 1.46094 1.52997 1.12073 1.24468 1.18236 0.80050 0.84929 0.82109 1.90715 1.38488 1.76999 1.35710 1.20037 1.01884 0.94456 0.97291 1.21457 0.95192 0.96328 0.97247 1.21165 1.00558 0.93665 0.99082 1.21383 0.96739 0.99757 0.93709 1.21152 0.98821 0.95894 0.99122 1.21274 0.97081 0.92719 0.97069 1.22635 0.99571 0.96542 0.96844 1.23237 0.99022 0.96516 0.91319 1.65194 1.33037 1.21645 1.00950 1.22131 1.01408 0.92789 0.93784 1.19593 0.84281 0.87098 0.85288 1.90507 1.55237 1.15596 1.83129 1.42217 1.64089 1.07107 1.09472 1.19413 1.44964 0.96665 0.82301 0.86249 1.25039 0.97469 0.98511 0.95112 1.69622 1.46789 1.35058 1.00554 0.86683 0.78932 0.85355 0.78497 1.19648 1.20132 1.19464 1.23499 0.91062 0.98403 0.96455 0.90350 0.92346 0.91784 0.75767 0.85180 0.85247 0.85679 0.85487 0.84784 0.90568 0.90567 0.93816 0.90013 0.93225 0.88815 0.79697 0.91581 0.87179 0.92748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.91 8.17 37.16 0.30 -1.61 16 2 C 0.17 2.24 1.01 -130.44 -0.13 2.11 16 3 N -0.70 -9.04 5.05 -47.26 -0.24 -9.28 16 4 C 0.56 7.45 6.94 -12.33 -0.09 7.37 16 5 O -0.54 -8.32 13.64 5.32 0.07 -8.24 16 6 C -0.13 -1.55 5.87 -104.97 -0.62 -2.17 16 7 C -0.08 -0.86 9.54 -39.19 -0.37 -1.23 16 8 C -0.13 -1.12 10.03 -39.64 -0.40 -1.52 16 9 C -0.10 -0.78 10.04 -39.49 -0.40 -1.18 16 10 C -0.13 -1.11 10.03 -39.64 -0.40 -1.51 16 11 C -0.06 -0.65 9.60 -39.18 -0.38 -1.03 16 12 C -0.12 -1.47 5.48 -25.35 -0.14 -1.61 16 13 C 0.03 0.34 6.49 -2.18 -0.01 0.33 16 14 N -0.48 -7.51 5.18 -231.41 -1.20 -8.71 16 15 C 0.03 0.50 5.39 -4.98 -0.03 0.47 16 16 C 0.45 9.84 7.43 -10.98 -0.08 9.76 16 17 O -0.56 -14.13 14.00 5.55 0.08 -14.05 16 18 N -0.59 -13.64 5.09 -10.96 -0.06 -13.70 16 19 C -0.30 -8.40 10.16 -14.94 -0.15 -8.55 16 20 H 0.12 3.75 7.39 -52.48 -0.39 3.37 16 21 C 0.04 1.12 5.50 -17.47 -0.10 1.03 16 22 N -0.88 -25.30 13.96 55.50 0.77 -24.53 16 23 Si 0.88 19.03 27.74 -169.99 -4.71 14.32 16 24 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 25 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 26 H -0.27 -5.31 6.52 56.52 0.37 -4.94 16 27 C 0.03 0.51 4.78 -2.18 -0.01 0.50 16 28 H 0.08 1.04 6.32 -51.93 -0.33 0.71 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.06 0.69 8.12 -51.93 -0.42 0.27 16 31 H 0.41 4.99 6.30 -40.82 -0.26 4.73 16 32 H 0.13 1.24 6.41 -52.49 -0.34 0.90 16 33 H 0.13 0.91 8.06 -52.49 -0.42 0.48 16 34 H 0.13 0.69 8.06 -52.48 -0.42 0.27 16 35 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 36 H 0.13 1.38 7.65 -52.49 -0.40 0.98 16 37 H 0.08 0.89 7.71 -51.93 -0.40 0.49 16 38 H 0.08 1.05 7.31 -51.93 -0.38 0.67 16 39 H 0.04 0.49 7.92 -51.93 -0.41 0.08 16 40 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.05 0.71 7.98 -51.93 -0.41 0.29 16 42 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 43 H 0.37 7.56 5.76 -40.82 -0.24 7.32 16 44 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 45 H 0.11 1.94 6.14 -51.93 -0.32 1.62 16 46 H 0.05 0.80 7.66 -51.93 -0.40 0.40 16 LS Contribution 371.43 15.07 5.60 5.60 Total: -1.00 -32.67 371.43 -9.07 -41.75 By element: Atomic # 1 Polarization: 22.09 SS G_CDS: -6.39 Total: 15.69 kcal Atomic # 6 Polarization: 4.15 SS G_CDS: -2.99 Total: 1.15 kcal Atomic # 7 Polarization: -55.50 SS G_CDS: -0.72 Total: -56.22 kcal Atomic # 8 Polarization: -22.44 SS G_CDS: 0.15 Total: -22.29 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -4.71 Total: 14.32 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.67 -9.07 -41.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671609158.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.899 kcal (2) G-P(sol) polarization free energy of solvation -32.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds