Wall clock time and date at job start Tue Mar 31 2020 17:17:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46501 * 110.36747 * 2 1 4 4 C 1.34774 * 119.99874 * 60.73153 * 3 2 1 5 5 O 1.21548 * 119.99926 * 0.02562 * 4 3 2 6 6 C 1.47853 * 119.99930 * 179.97438 * 4 3 2 7 7 C 1.39572 * 120.14467 * 359.72590 * 6 4 3 8 8 C 1.37958 * 119.85334 * 179.78325 * 7 6 4 9 9 C 1.38358 * 120.14164 * 0.49117 * 8 7 6 10 10 C 1.38357 * 120.29647 * 359.74232 * 9 8 7 11 11 C 1.37963 * 120.14426 * 0.02562 * 10 9 8 12 12 C 1.54261 * 110.32679 * 122.18389 * 2 1 3 13 13 C 1.54386 * 105.05979 * 118.89484 * 12 2 1 14 14 N 1.48562 * 104.59336 * 23.85250 * 13 12 2 15 15 C 1.46894 * 111.00080 * 200.95721 * 14 13 12 16 16 C 1.50704 * 109.47459 * 176.47495 * 15 14 13 17 17 O 1.21286 * 119.99443 * 6.03595 * 16 15 14 18 18 N 1.34774 * 119.99755 * 185.76454 * 16 15 14 19 19 C 1.37100 * 119.99752 * 180.27672 * 18 16 15 20 20 H 1.08004 * 119.99871 * 359.97438 * 19 18 16 21 21 C 1.38941 * 120.00285 * 180.02562 * 19 18 16 22 22 N 1.31414 * 119.99983 * 179.97438 * 21 19 18 23 23 Si 1.86798 * 120.00099 * 359.97438 * 21 19 18 24 24 H 1.48501 * 109.46797 * 90.00148 * 23 21 19 25 25 H 1.48500 * 109.47399 * 210.00472 * 23 21 19 26 26 H 1.48509 * 109.46988 * 330.00565 * 23 21 19 27 27 C 1.48554 * 104.22381 * 320.51889 * 14 13 12 28 28 H 1.09002 * 109.46649 * 299.27007 * 1 2 3 29 29 H 1.09000 * 109.47203 * 59.26802 * 1 2 3 30 30 H 1.09002 * 109.47281 * 179.27156 * 1 2 3 31 31 H 0.97001 * 120.00210 * 240.72957 * 3 2 1 32 32 H 1.08000 * 120.07341 * 0.02562 * 7 6 4 33 33 H 1.07996 * 119.93084 * 180.22773 * 8 7 6 34 34 H 1.08006 * 119.85524 * 179.71600 * 9 8 7 35 35 H 1.08002 * 119.93328 * 179.97438 * 10 9 8 36 36 H 1.07997 * 120.07675 * 179.97438 * 11 10 9 37 37 H 1.08995 * 110.32142 * 0.02562 * 12 2 1 38 38 H 1.09001 * 110.32451 * 237.78841 * 12 2 1 39 39 H 1.08993 * 110.40941 * 265.07800 * 13 12 2 40 40 H 1.09002 * 110.40835 * 142.62779 * 13 12 2 41 41 H 1.09000 * 109.47053 * 56.47520 * 15 14 13 42 42 H 1.09003 * 109.47477 * 296.47744 * 15 14 13 43 43 H 0.96995 * 120.00181 * 0.27214 * 18 16 15 44 44 H 0.97005 * 119.99466 * 179.97438 * 22 21 19 45 45 H 1.09003 * 110.41617 * 158.26074 * 27 14 13 46 46 H 1.09006 * 110.41252 * 280.70160 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0398 1.3734 0.0000 4 6 1.7394 2.2037 1.0182 5 8 1.0458 1.8129 1.9367 6 6 2.2544 3.5897 1.0185 7 6 3.0567 4.0395 -0.0313 8 6 3.5304 5.3352 -0.0272 9 6 3.2200 6.1850 1.0196 10 6 2.4292 5.7440 2.0658 11 6 1.9452 4.4520 2.0715 12 6 2.0658 -0.7705 1.2243 13 6 2.8807 -1.9422 0.6356 14 7 3.2693 -1.4828 -0.7227 15 6 3.6068 -2.6215 -1.5871 16 6 3.9111 -2.1245 -2.9769 17 8 3.9601 -0.9329 -3.1974 18 7 4.1342 -3.0041 -3.9733 19 6 4.4167 -2.5520 -5.2364 20 1 4.4600 -1.4908 -5.4329 21 6 4.6462 -3.4587 -6.2638 22 7 4.9164 -3.0252 -7.4746 23 14 4.5706 -5.2940 -5.9240 24 1 3.1841 -5.7804 -6.1391 25 1 5.4934 -6.0062 -6.8440 26 1 4.9741 -5.5543 -4.5187 27 6 2.0662 -0.7710 -1.2253 28 1 -0.3633 0.5025 0.8965 29 1 -0.3633 0.5252 -0.8833 30 1 -0.3634 -1.0276 -0.0131 31 1 2.5937 1.6852 -0.7328 32 1 3.3030 3.3758 -0.8470 33 1 4.1482 5.6857 -0.8406 34 1 3.5971 7.1971 1.0204 35 1 2.1910 6.4122 2.8801 36 1 1.3284 4.1088 2.8888 37 1 1.2388 -1.1490 1.8249 38 1 2.7083 -0.1268 1.8252 39 1 2.2648 -2.8392 0.5717 40 1 3.7672 -2.1308 1.2412 41 1 2.7638 -3.3116 -1.6245 42 1 4.4800 -3.1361 -1.1859 43 1 4.0950 -3.9571 -3.7968 44 1 5.0770 -3.6583 -8.1917 45 1 2.3393 -0.0777 -2.0209 46 1 1.3228 -1.4848 -1.5805 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001671609158.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:17:58 Heat of formation + Delta-G solvation = -50.149856 kcal Electronic energy + Delta-G solvation = -28172.927717 eV Core-core repulsion = 24254.755374 eV Total energy + Delta-G solvation = -3918.172343 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.71605 -40.60451 -39.69352 -38.68447 -36.09427 -35.59080 -33.75524 -33.29775 -31.88496 -31.55536 -30.51100 -28.93477 -27.03495 -25.51876 -24.83431 -23.47026 -22.51251 -21.87416 -21.24017 -20.43466 -20.15677 -19.09305 -17.88165 -17.24955 -17.04305 -16.86640 -16.50503 -16.34535 -16.07016 -15.92124 -15.51336 -15.22779 -15.11984 -14.77568 -14.62744 -14.36547 -14.32324 -14.11611 -13.88257 -13.66214 -13.35058 -13.29899 -13.03313 -12.98102 -12.66117 -12.56058 -12.41153 -12.30816 -12.04605 -11.97834 -11.91342 -11.84158 -11.46411 -10.81663 -10.36011 -10.22818 -10.19879 -9.95771 -9.87013 -9.39992 -8.40387 -6.00649 -0.12687 0.40882 1.30780 1.35404 1.44462 1.87424 1.96122 2.12592 2.23326 2.65527 2.91032 3.16177 3.18689 3.36076 3.72187 3.75782 3.91237 4.01594 4.03260 4.16462 4.21344 4.24526 4.29642 4.40683 4.46721 4.49692 4.53455 4.62246 4.71218 4.72264 4.77613 4.86136 4.94125 5.02526 5.05267 5.15794 5.23191 5.35938 5.44746 5.50159 5.52770 5.55854 5.81150 5.89958 5.95053 6.01837 6.51252 6.60632 6.89551 7.16981 7.40985 7.97227 8.77036 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.016622 B = 0.002665 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.131977 B =10502.648626 C =11701.907901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.171 3.829 3 N -0.705 5.705 4 C 0.558 3.442 5 O -0.566 6.566 6 C -0.157 4.157 7 C -0.095 4.095 8 C -0.133 4.133 9 C -0.091 4.091 10 C -0.129 4.129 11 C -0.075 4.075 12 C -0.111 4.111 13 C 0.034 3.966 14 N -0.506 5.506 15 C 0.041 3.959 16 C 0.452 3.548 17 O -0.602 6.602 18 N -0.592 5.592 19 C -0.324 4.324 20 H 0.058 0.942 21 C -0.015 4.015 22 N -0.935 5.935 23 Si 0.962 3.038 24 H -0.258 1.258 25 H -0.277 1.277 26 H -0.231 1.231 27 C 0.039 3.961 28 H 0.067 0.933 29 H 0.054 0.946 30 H 0.081 0.919 31 H 0.405 0.595 32 H 0.128 0.872 33 H 0.148 0.852 34 H 0.157 0.843 35 H 0.155 0.845 36 H 0.130 0.870 37 H 0.088 0.912 38 H 0.060 0.940 39 H 0.068 0.932 40 H 0.093 0.907 41 H 0.083 0.917 42 H 0.121 0.879 43 H 0.389 0.611 44 H 0.278 0.722 45 H 0.076 0.924 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.382 7.850 20.670 23.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.085 3.915 3 N -0.356 5.356 4 C 0.347 3.653 5 O -0.447 6.447 6 C -0.160 4.160 7 C -0.114 4.114 8 C -0.150 4.150 9 C -0.109 4.109 10 C -0.147 4.147 11 C -0.094 4.094 12 C -0.150 4.150 13 C -0.094 4.094 14 N -0.231 5.231 15 C -0.090 4.090 16 C 0.239 3.761 17 O -0.486 6.486 18 N -0.234 5.234 19 C -0.453 4.453 20 H 0.076 0.924 21 C -0.214 4.214 22 N -0.576 5.576 23 Si 0.782 3.218 24 H -0.183 1.183 25 H -0.202 1.202 26 H -0.154 1.154 27 C -0.090 4.090 28 H 0.086 0.914 29 H 0.073 0.927 30 H 0.100 0.900 31 H 0.242 0.758 32 H 0.145 0.855 33 H 0.165 0.835 34 H 0.175 0.825 35 H 0.173 0.827 36 H 0.148 0.852 37 H 0.106 0.894 38 H 0.079 0.921 39 H 0.086 0.914 40 H 0.111 0.889 41 H 0.101 0.899 42 H 0.139 0.861 43 H 0.224 0.776 44 H 0.088 0.912 45 H 0.094 0.906 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.306 8.636 20.942 23.514 hybrid contribution -0.190 -1.301 -1.176 1.764 sum -6.496 7.335 19.765 22.060 Atomic orbital electron populations 1.22137 0.92882 1.03326 1.02606 1.21087 0.94143 0.81060 0.95212 1.46128 1.52882 1.12196 1.24430 1.18526 0.79554 0.85607 0.81605 1.90682 1.39762 1.77650 1.36565 1.20028 1.03416 0.93867 0.98642 1.21539 0.95530 0.97303 0.97018 1.21469 1.00446 0.93081 1.00044 1.21786 0.95531 1.00919 0.92675 1.21487 0.97976 0.95237 0.99980 1.21395 0.97594 0.93699 0.96742 1.22583 0.99695 0.96387 0.96322 1.23281 0.99872 0.96985 0.89228 1.65152 1.33657 1.22006 1.02266 1.22078 1.03818 0.93326 0.89759 1.20774 0.81680 0.86448 0.87156 1.90507 1.56047 1.17760 1.84310 1.42045 1.64979 1.08250 1.08149 1.18985 1.46862 0.94379 0.85066 0.92415 1.26078 0.96137 1.05013 0.94165 1.69804 1.48094 1.37606 1.02054 0.85405 0.79496 0.76553 0.80338 1.18253 1.20216 1.15445 1.23344 0.91188 0.98132 0.96289 0.91392 0.92735 0.90005 0.75808 0.85454 0.83457 0.82530 0.82727 0.85234 0.89366 0.92120 0.91379 0.88851 0.89931 0.86127 0.77598 0.91230 0.90578 0.92199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.60 8.17 71.98 0.59 -3.01 16 2 C 0.17 4.45 1.01 4.50 0.00 4.45 16 3 N -0.71 -18.87 5.05 -421.70 -2.13 -21.00 16 4 C 0.56 15.47 6.94 86.79 0.60 16.07 16 5 O -0.57 -17.88 13.64 -3.87 -0.05 -17.94 16 6 C -0.16 -3.76 5.87 -20.09 -0.12 -3.88 16 7 C -0.10 -2.01 9.54 22.53 0.21 -1.80 16 8 C -0.13 -2.21 10.03 22.23 0.22 -1.99 16 9 C -0.09 -1.25 10.04 22.33 0.22 -1.03 16 10 C -0.13 -1.95 10.03 22.23 0.22 -1.73 16 11 C -0.08 -1.57 9.60 22.53 0.22 -1.36 16 12 C -0.11 -2.64 5.48 31.49 0.17 -2.47 16 13 C 0.03 0.73 6.49 86.45 0.56 1.30 16 14 N -0.51 -14.84 5.18 -886.03 -4.59 -19.43 16 15 C 0.04 1.23 5.39 85.56 0.46 1.69 16 16 C 0.45 19.54 7.43 87.66 0.65 20.19 16 17 O -0.60 -31.46 14.00 -3.05 -0.04 -31.50 16 18 N -0.59 -27.07 5.09 -306.99 -1.56 -28.63 16 19 C -0.32 -18.50 10.16 84.04 0.85 -17.64 16 20 H 0.06 3.93 7.39 -2.91 -0.02 3.91 16 21 C -0.02 -0.84 5.50 84.92 0.47 -0.37 16 22 N -0.93 -55.69 13.96 21.66 0.30 -55.39 16 23 Si 0.96 38.13 27.74 68.60 1.90 40.04 16 24 H -0.26 -9.70 7.11 99.48 0.71 -9.00 16 25 H -0.28 -11.00 7.11 99.48 0.71 -10.29 16 26 H -0.23 -7.68 6.52 99.48 0.65 -7.03 16 27 C 0.04 1.16 4.78 86.45 0.41 1.57 16 28 H 0.07 1.79 6.32 -2.39 -0.02 1.77 16 29 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.08 1.63 8.12 -2.39 -0.02 1.61 16 31 H 0.40 10.75 6.30 -92.71 -0.58 10.17 16 32 H 0.13 2.63 6.41 -2.91 -0.02 2.61 16 33 H 0.15 1.86 8.06 -2.91 -0.02 1.83 16 34 H 0.16 1.16 8.06 -2.91 -0.02 1.14 16 35 H 0.16 1.43 8.06 -2.91 -0.02 1.40 16 36 H 0.13 2.73 7.65 -2.91 -0.02 2.71 16 37 H 0.09 1.89 7.71 -2.39 -0.02 1.87 16 38 H 0.06 1.64 7.31 -2.39 -0.02 1.62 16 39 H 0.07 1.20 7.92 -2.39 -0.02 1.18 16 40 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 41 H 0.08 1.97 7.98 -2.39 -0.02 1.95 16 42 H 0.12 3.00 8.14 -2.39 -0.02 2.98 16 43 H 0.39 14.72 5.76 -92.71 -0.53 14.18 16 44 H 0.28 15.19 8.31 -92.70 -0.77 14.41 16 45 H 0.08 2.81 6.14 -2.39 -0.01 2.79 16 46 H 0.06 1.69 7.66 -2.38 -0.02 1.67 16 Total: -1.00 -76.64 371.43 -0.58 -77.21 By element: Atomic # 1 Polarization: 46.80 SS G_CDS: -0.16 Total: 46.64 kcal Atomic # 6 Polarization: 4.23 SS G_CDS: 5.76 Total: 9.99 kcal Atomic # 7 Polarization: -116.47 SS G_CDS: -7.98 Total: -124.45 kcal Atomic # 8 Polarization: -49.34 SS G_CDS: -0.10 Total: -49.43 kcal Atomic # 14 Polarization: 38.13 SS G_CDS: 1.90 Total: 40.04 kcal Total: -76.64 -0.58 -77.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671609158.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.064 kcal (2) G-P(sol) polarization free energy of solvation -76.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds