Wall clock time and date at job start Tue Mar 31 2020 17:18:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 110.88583 * 2 1 4 4 C 1.34773 * 119.99841 * 56.11901 * 3 2 1 5 5 O 1.21277 * 120.00104 * 0.02562 * 4 3 2 6 6 C 1.50705 * 119.99863 * 179.97438 * 4 3 2 7 7 C 1.50693 * 109.47029 * 180.02562 * 6 4 3 8 8 C 1.38364 * 119.85715 * 269.72507 * 7 6 4 9 9 C 1.37962 * 120.14748 * 179.76545 * 8 7 6 10 10 C 1.39571 * 119.84771 * 0.51359 * 9 8 7 11 11 C 1.47847 * 120.14090 * 179.72238 * 10 9 8 12 12 N 1.34785 * 119.99919 * 0.02562 * 11 10 9 13 13 O 1.21555 * 120.00287 * 180.02562 * 11 10 9 14 14 C 1.39577 * 119.71698 * 359.74049 * 10 9 8 15 15 C 1.37950 * 119.85084 * 0.02562 * 14 10 9 16 16 C 1.55157 * 111.00154 * 236.12117 * 2 1 3 17 17 C 1.54325 * 102.94184 * 206.38597 * 16 2 1 18 18 N 1.47022 * 107.26948 * 22.19107 * 17 16 2 19 19 C 1.36945 * 125.64832 * 181.02381 * 18 17 16 20 20 H 1.07997 * 119.99756 * 180.02562 * 19 18 17 21 21 C 1.38805 * 119.99878 * 0.02562 * 19 18 17 22 22 N 1.31624 * 120.00257 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99929 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47187 * 179.97438 * 23 21 19 25 25 H 1.48494 * 109.47141 * 300.00154 * 23 21 19 26 26 H 1.48498 * 109.47018 * 60.00200 * 23 21 19 27 27 C 1.47423 * 108.70390 * 1.29074 * 18 17 16 28 28 H 1.09005 * 109.47437 * 183.88054 * 1 2 3 29 29 H 1.09002 * 109.47487 * 303.87691 * 1 2 3 30 30 H 1.08997 * 109.47396 * 63.88216 * 1 2 3 31 31 H 0.97003 * 119.99983 * 236.12031 * 3 2 1 32 32 H 1.08994 * 109.47196 * 300.00527 * 6 4 3 33 33 H 1.09002 * 109.46928 * 60.00592 * 6 4 3 34 34 H 1.08008 * 119.92294 * 0.02562 * 8 7 6 35 35 H 1.07993 * 120.07354 * 180.27551 * 9 8 7 36 36 H 0.96998 * 119.99604 * 359.97438 * 12 11 10 37 37 H 0.96997 * 119.99651 * 180.02562 * 12 11 10 38 38 H 1.07998 * 120.07309 * 179.97438 * 14 10 9 39 39 H 1.07999 * 119.93091 * 180.02562 * 15 14 10 40 40 H 1.09000 * 110.72140 * 88.02427 * 16 2 1 41 41 H 1.08998 * 110.72520 * 324.74746 * 16 2 1 42 42 H 1.09002 * 109.88274 * 262.77538 * 17 16 2 43 43 H 1.09000 * 110.01178 * 141.68100 * 17 16 2 44 44 H 0.97001 * 119.99885 * 179.97438 * 22 21 19 45 45 H 1.09000 * 110.37068 * 94.48354 * 27 18 17 46 46 H 1.09005 * 110.36651 * 216.80519 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0523 1.3687 0.0000 4 6 1.6846 2.2303 0.9690 5 8 0.9217 1.8723 1.8412 6 6 2.2223 3.6381 0.9693 7 6 1.6618 4.3896 2.1491 8 6 0.4778 5.0935 2.0181 9 6 -0.0433 5.7796 3.0956 10 6 0.6323 5.7714 4.3169 11 6 0.0829 6.5095 5.4742 12 7 -1.0730 7.1918 5.3512 13 8 0.6736 6.5011 6.5365 14 6 1.8289 5.0638 4.4409 15 6 2.3366 4.3779 3.3570 16 6 2.0861 -0.8075 -1.2026 17 6 3.4678 -1.2731 -0.6970 18 7 3.4280 -1.2422 0.7724 19 6 4.4654 -1.5655 1.6059 20 1 4.3350 -1.5108 2.6765 21 6 5.6844 -1.9633 1.0746 22 7 5.8435 -2.0294 -0.2304 23 14 7.0998 -2.4036 2.2115 24 1 8.2820 -2.7937 1.4020 25 1 7.4416 -1.2294 3.0539 26 1 6.7005 -3.5382 3.0823 27 6 2.0844 -0.8119 1.2000 28 1 -0.3634 -1.0253 0.0696 29 1 -0.3634 0.5728 0.8532 30 1 -0.3634 0.4524 -0.9227 31 1 2.6627 1.6549 -0.6974 32 1 3.3097 3.6117 1.0391 33 1 1.9295 4.1391 0.0466 34 1 -0.0418 5.1023 1.0713 35 1 -0.9698 6.3249 2.9932 36 1 -1.5442 7.1988 4.5034 37 1 -1.4332 7.6763 6.1104 38 1 2.3567 5.0539 5.3831 39 1 3.2622 3.8296 3.4516 40 1 2.1915 -0.1693 -2.0799 41 1 1.4471 -1.6630 -1.4212 42 1 4.2425 -0.5982 -1.0611 43 1 3.6684 -2.2877 -1.0411 44 1 6.6956 -2.3071 -0.6016 45 1 1.4537 -1.6784 1.3986 46 1 2.1523 -0.1802 2.0857 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001671694629.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:18:34 Heat of formation + Delta-G solvation = -23.943225 kcal Electronic energy + Delta-G solvation = -28207.961627 eV Core-core repulsion = 24290.925689 eV Total energy + Delta-G solvation = -3917.035939 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.43189 -39.79643 -38.45915 -37.17198 -34.18533 -33.91081 -32.88911 -31.80085 -31.04891 -30.07419 -28.72416 -27.87914 -25.66441 -23.87596 -23.30542 -22.82132 -21.09456 -20.40695 -20.02888 -19.03345 -18.43035 -17.20599 -17.08406 -16.52086 -15.88331 -15.49021 -15.21415 -15.16040 -14.93839 -14.62352 -14.40526 -13.91507 -13.76264 -13.69976 -13.44121 -13.27193 -12.85913 -12.41386 -12.35106 -11.95242 -11.92099 -11.79301 -11.69805 -11.60628 -11.15936 -10.89917 -10.86509 -10.38982 -10.35557 -10.29335 -10.11308 -10.01387 -10.00907 -9.66248 -9.34293 -9.10546 -8.84539 -8.66356 -8.52054 -6.80680 -5.71293 -3.03289 0.66590 1.26513 2.65127 2.94085 3.23817 3.41107 3.45565 3.46374 3.46840 3.82223 4.44841 4.50833 4.55997 4.67576 4.81695 4.97901 5.08490 5.20692 5.23337 5.38780 5.39237 5.47362 5.50605 5.61477 5.68801 5.72363 5.86066 6.01921 6.07971 6.13680 6.15756 6.18757 6.36217 6.39502 6.42107 6.47734 6.53833 6.68361 6.73908 6.80091 7.03373 7.13033 7.53770 7.55409 7.79456 7.90583 7.98384 8.25912 8.57879 9.23309 9.83327 10.49302 11.40626 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.013957 B = 0.002910 C = 0.002554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.744220 B = 9620.144109 C =10962.705999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.158 3.842 3 N -0.701 5.701 4 C 0.518 3.482 5 O -0.533 6.533 6 C -0.112 4.112 7 C -0.026 4.026 8 C -0.115 4.115 9 C -0.085 4.085 10 C -0.148 4.148 11 C 0.566 3.434 12 N -0.853 5.853 13 O -0.542 6.542 14 C -0.055 4.055 15 C -0.110 4.110 16 C -0.147 4.147 17 C 0.177 3.823 18 N -0.603 5.603 19 C -0.222 4.222 20 H 0.075 0.925 21 C -0.009 4.009 22 N -0.925 5.925 23 Si 0.910 3.090 24 H -0.291 1.291 25 H -0.286 1.286 26 H -0.285 1.285 27 C 0.133 3.867 28 H 0.061 0.939 29 H 0.078 0.922 30 H 0.048 0.952 31 H 0.399 0.601 32 H 0.107 0.893 33 H 0.102 0.898 34 H 0.127 0.873 35 H 0.124 0.876 36 H 0.401 0.599 37 H 0.403 0.597 38 H 0.136 0.864 39 H 0.132 0.868 40 H 0.064 0.936 41 H 0.072 0.928 42 H 0.045 0.955 43 H 0.043 0.957 44 H 0.252 0.748 45 H 0.025 0.975 46 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.589 17.579 -1.429 22.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.071 3.929 3 N -0.351 5.351 4 C 0.304 3.696 5 O -0.410 6.410 6 C -0.152 4.152 7 C -0.027 4.027 8 C -0.133 4.133 9 C -0.104 4.104 10 C -0.151 4.151 11 C 0.352 3.648 12 N -0.417 5.417 13 O -0.420 6.420 14 C -0.073 4.073 15 C -0.128 4.128 16 C -0.186 4.186 17 C 0.052 3.948 18 N -0.329 5.329 19 C -0.351 4.351 20 H 0.093 0.907 21 C -0.205 4.205 22 N -0.573 5.573 23 Si 0.741 3.259 24 H -0.216 1.216 25 H -0.212 1.212 26 H -0.212 1.212 27 C 0.006 3.994 28 H 0.080 0.920 29 H 0.097 0.903 30 H 0.067 0.933 31 H 0.233 0.767 32 H 0.125 0.875 33 H 0.120 0.880 34 H 0.145 0.855 35 H 0.141 0.859 36 H 0.230 0.770 37 H 0.234 0.766 38 H 0.153 0.847 39 H 0.150 0.850 40 H 0.082 0.918 41 H 0.090 0.910 42 H 0.063 0.937 43 H 0.061 0.939 44 H 0.062 0.938 45 H 0.042 0.958 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -13.392 17.109 -0.222 21.729 hybrid contribution 0.745 -0.044 -0.015 0.747 sum -12.647 17.065 -0.237 21.242 Atomic orbital electron populations 1.22035 0.94335 1.02355 1.02379 1.21492 0.92596 0.80828 0.97982 1.45796 1.48643 1.11779 1.28912 1.20193 0.81365 0.86467 0.81609 1.90668 1.35655 1.78394 1.36328 1.20800 1.02953 0.93439 0.97978 1.19557 0.94271 0.94480 0.94379 1.20893 0.95563 0.97857 0.99007 1.21137 0.98706 0.98467 0.92104 1.19796 0.98193 1.03339 0.93802 1.18356 0.80422 0.78110 0.87874 1.43756 1.25671 1.54734 1.17574 1.90815 1.59727 1.62512 1.28940 1.21226 0.93737 0.93343 0.99031 1.21088 1.00828 0.98887 0.92039 1.23226 1.00480 0.98926 0.95938 1.21153 0.89968 0.99940 0.83705 1.44440 1.07614 1.79096 1.01783 1.19013 0.89344 1.37737 0.88972 0.90673 1.24757 0.97756 1.01982 0.96006 1.69938 1.24216 1.54020 1.09158 0.86216 0.81850 0.78338 0.79489 1.21646 1.21222 1.21213 1.21906 0.87558 0.94835 0.95054 0.92036 0.90329 0.93337 0.76734 0.87474 0.87955 0.85528 0.85863 0.76990 0.76583 0.84662 0.85036 0.91777 0.90956 0.93657 0.93876 0.93817 0.95789 0.93232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 8.59 37.16 0.32 -1.96 16 2 C 0.16 2.69 0.82 -129.55 -0.11 2.58 16 3 N -0.70 -10.55 5.19 -45.52 -0.24 -10.79 16 4 C 0.52 7.71 7.21 -10.98 -0.08 7.63 16 5 O -0.53 -9.71 12.87 5.56 0.07 -9.64 16 6 C -0.11 -1.21 5.82 -29.04 -0.17 -1.37 16 7 C -0.03 -0.30 4.38 -104.53 -0.46 -0.76 16 8 C -0.12 -1.15 9.68 -39.64 -0.38 -1.53 16 9 C -0.09 -0.78 9.54 -39.19 -0.37 -1.16 16 10 C -0.15 -1.69 5.87 -104.97 -0.62 -2.31 16 11 C 0.57 6.52 8.05 -12.32 -0.10 6.42 16 12 N -0.85 -5.79 8.83 30.53 0.27 -5.52 16 13 O -0.54 -8.41 17.18 5.32 0.09 -8.32 16 14 C -0.05 -0.69 9.60 -39.19 -0.38 -1.06 16 15 C -0.11 -1.38 9.68 -39.64 -0.38 -1.76 16 16 C -0.15 -2.53 5.97 -24.90 -0.15 -2.68 16 17 C 0.18 4.09 5.37 -3.06 -0.02 4.07 16 18 N -0.60 -15.19 3.39 -169.93 -0.58 -15.77 16 19 C -0.22 -6.22 10.28 -15.06 -0.15 -6.37 16 20 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 21 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 22 N -0.93 -26.66 10.31 55.49 0.57 -26.08 16 23 Si 0.91 22.22 29.55 -169.99 -5.02 17.19 16 24 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 25 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 26 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 27 C 0.13 2.88 6.18 -2.41 -0.01 2.87 16 28 H 0.06 0.88 8.07 -51.93 -0.42 0.46 16 29 H 0.08 1.29 5.92 -51.93 -0.31 0.98 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.40 5.24 8.51 -40.82 -0.35 4.90 16 32 H 0.11 1.08 8.08 -51.93 -0.42 0.66 16 33 H 0.10 0.79 8.08 -51.93 -0.42 0.37 16 34 H 0.13 0.99 8.06 -52.48 -0.42 0.57 16 35 H 0.12 0.68 6.40 -52.49 -0.34 0.34 16 36 H 0.40 1.57 6.86 -40.82 -0.28 1.29 16 37 H 0.40 2.17 8.93 -40.82 -0.36 1.81 16 38 H 0.14 1.70 7.65 -52.49 -0.40 1.30 16 39 H 0.13 1.59 8.06 -52.49 -0.42 1.16 16 40 H 0.06 0.94 8.09 -51.93 -0.42 0.52 16 41 H 0.07 1.18 8.04 -51.93 -0.42 0.76 16 42 H 0.05 1.13 7.38 -51.93 -0.38 0.75 16 43 H 0.04 1.12 7.50 -51.93 -0.39 0.73 16 44 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 45 H 0.02 0.53 7.99 -51.93 -0.41 0.12 16 46 H 0.05 1.16 6.89 -51.93 -0.36 0.80 16 LS Contribution 375.95 15.07 5.67 5.67 Total: -1.00 -35.78 375.95 -8.82 -44.59 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -6.49 Total: 6.42 kcal Atomic # 6 Polarization: 5.40 SS G_CDS: -3.16 Total: 2.25 kcal Atomic # 7 Polarization: -58.19 SS G_CDS: 0.03 Total: -58.16 kcal Atomic # 8 Polarization: -18.12 SS G_CDS: 0.16 Total: -17.95 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -35.78 -8.82 -44.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671694629.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.651 kcal (2) G-P(sol) polarization free energy of solvation -35.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds