Wall clock time and date at job start Tue Mar 31 2020 17:18:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 110.88583 * 2 1 4 4 C 1.34773 * 119.99841 * 56.11901 * 3 2 1 5 5 O 1.21277 * 120.00104 * 0.02562 * 4 3 2 6 6 C 1.50705 * 119.99863 * 179.97438 * 4 3 2 7 7 C 1.50693 * 109.47029 * 180.02562 * 6 4 3 8 8 C 1.38364 * 119.85715 * 269.72507 * 7 6 4 9 9 C 1.37962 * 120.14748 * 179.76545 * 8 7 6 10 10 C 1.39571 * 119.84771 * 0.51359 * 9 8 7 11 11 C 1.47847 * 120.14090 * 179.72238 * 10 9 8 12 12 N 1.34785 * 119.99919 * 0.02562 * 11 10 9 13 13 O 1.21555 * 120.00287 * 180.02562 * 11 10 9 14 14 C 1.39577 * 119.71698 * 359.74049 * 10 9 8 15 15 C 1.37950 * 119.85084 * 0.02562 * 14 10 9 16 16 C 1.55157 * 111.00154 * 236.12117 * 2 1 3 17 17 C 1.54325 * 102.94184 * 206.38597 * 16 2 1 18 18 N 1.47022 * 107.26948 * 22.19107 * 17 16 2 19 19 C 1.36945 * 125.64832 * 181.02381 * 18 17 16 20 20 H 1.07997 * 119.99756 * 180.02562 * 19 18 17 21 21 C 1.38805 * 119.99878 * 0.02562 * 19 18 17 22 22 N 1.31624 * 120.00257 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99929 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47187 * 179.97438 * 23 21 19 25 25 H 1.48494 * 109.47141 * 300.00154 * 23 21 19 26 26 H 1.48498 * 109.47018 * 60.00200 * 23 21 19 27 27 C 1.47423 * 108.70390 * 1.29074 * 18 17 16 28 28 H 1.09005 * 109.47437 * 183.88054 * 1 2 3 29 29 H 1.09002 * 109.47487 * 303.87691 * 1 2 3 30 30 H 1.08997 * 109.47396 * 63.88216 * 1 2 3 31 31 H 0.97003 * 119.99983 * 236.12031 * 3 2 1 32 32 H 1.08994 * 109.47196 * 300.00527 * 6 4 3 33 33 H 1.09002 * 109.46928 * 60.00592 * 6 4 3 34 34 H 1.08008 * 119.92294 * 0.02562 * 8 7 6 35 35 H 1.07993 * 120.07354 * 180.27551 * 9 8 7 36 36 H 0.96998 * 119.99604 * 359.97438 * 12 11 10 37 37 H 0.96997 * 119.99651 * 180.02562 * 12 11 10 38 38 H 1.07998 * 120.07309 * 179.97438 * 14 10 9 39 39 H 1.07999 * 119.93091 * 180.02562 * 15 14 10 40 40 H 1.09000 * 110.72140 * 88.02427 * 16 2 1 41 41 H 1.08998 * 110.72520 * 324.74746 * 16 2 1 42 42 H 1.09002 * 109.88274 * 262.77538 * 17 16 2 43 43 H 1.09000 * 110.01178 * 141.68100 * 17 16 2 44 44 H 0.97001 * 119.99885 * 179.97438 * 22 21 19 45 45 H 1.09000 * 110.37068 * 94.48354 * 27 18 17 46 46 H 1.09005 * 110.36651 * 216.80519 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0523 1.3687 0.0000 4 6 1.6846 2.2303 0.9690 5 8 0.9217 1.8723 1.8412 6 6 2.2223 3.6381 0.9693 7 6 1.6618 4.3896 2.1491 8 6 0.4778 5.0935 2.0181 9 6 -0.0433 5.7796 3.0956 10 6 0.6323 5.7714 4.3169 11 6 0.0829 6.5095 5.4742 12 7 -1.0730 7.1918 5.3512 13 8 0.6736 6.5011 6.5365 14 6 1.8289 5.0638 4.4409 15 6 2.3366 4.3779 3.3570 16 6 2.0861 -0.8075 -1.2026 17 6 3.4678 -1.2731 -0.6970 18 7 3.4280 -1.2422 0.7724 19 6 4.4654 -1.5655 1.6059 20 1 4.3350 -1.5108 2.6765 21 6 5.6844 -1.9633 1.0746 22 7 5.8435 -2.0294 -0.2304 23 14 7.0998 -2.4036 2.2115 24 1 8.2820 -2.7937 1.4020 25 1 7.4416 -1.2294 3.0539 26 1 6.7005 -3.5382 3.0823 27 6 2.0844 -0.8119 1.2000 28 1 -0.3634 -1.0253 0.0696 29 1 -0.3634 0.5728 0.8532 30 1 -0.3634 0.4524 -0.9227 31 1 2.6627 1.6549 -0.6974 32 1 3.3097 3.6117 1.0391 33 1 1.9295 4.1391 0.0466 34 1 -0.0418 5.1023 1.0713 35 1 -0.9698 6.3249 2.9932 36 1 -1.5442 7.1988 4.5034 37 1 -1.4332 7.6763 6.1104 38 1 2.3567 5.0539 5.3831 39 1 3.2622 3.8296 3.4516 40 1 2.1915 -0.1693 -2.0799 41 1 1.4471 -1.6630 -1.4212 42 1 4.2425 -0.5982 -1.0611 43 1 3.6684 -2.2877 -1.0411 44 1 6.6956 -2.3071 -0.6016 45 1 1.4537 -1.6784 1.3986 46 1 2.1523 -0.1802 2.0857 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001671694629.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:18:33 Heat of formation + Delta-G solvation = -50.737266 kcal Electronic energy + Delta-G solvation = -28209.123504 eV Core-core repulsion = 24290.925689 eV Total energy + Delta-G solvation = -3918.197815 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.43158 -40.91936 -39.50418 -38.56345 -35.61589 -35.00523 -33.92851 -33.34523 -31.87270 -31.66201 -30.35100 -28.81105 -27.49985 -25.45605 -24.38106 -23.64728 -22.37991 -21.85582 -21.16829 -20.38308 -19.20785 -18.95036 -17.90565 -17.86706 -17.16586 -16.70833 -16.44682 -16.23865 -16.04928 -15.85437 -15.68200 -15.44469 -15.15068 -14.77521 -14.56950 -14.26418 -14.17765 -13.87186 -13.56648 -13.42844 -13.30604 -13.15494 -12.89365 -12.75016 -12.70453 -12.62729 -12.10901 -12.03903 -11.97049 -11.94953 -11.68093 -11.52508 -11.23462 -10.77353 -10.71236 -10.56205 -9.94427 -9.90163 -9.74179 -8.86089 -7.86293 -5.19724 -0.19858 0.43195 1.43454 1.45353 1.51930 1.74849 1.81125 2.37756 2.47680 2.51895 2.91567 3.31793 3.60440 3.64768 3.72761 3.80571 3.93005 4.02680 4.07106 4.12263 4.22846 4.32694 4.41910 4.62396 4.66308 4.66876 4.72930 4.82474 4.89637 4.92837 4.95398 5.04576 5.04923 5.12276 5.26075 5.35432 5.41151 5.43311 5.57264 5.66971 5.74279 5.82194 5.83038 5.92296 6.20301 6.39095 6.75346 7.11885 7.25853 7.43497 7.77678 8.41639 9.23108 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.013957 B = 0.002910 C = 0.002554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.744220 B = 9620.144109 C =10962.705999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.170 3.830 3 N -0.700 5.700 4 C 0.514 3.486 5 O -0.569 6.569 6 C -0.103 4.103 7 C -0.038 4.038 8 C -0.114 4.114 9 C -0.073 4.073 10 C -0.160 4.160 11 C 0.562 3.438 12 N -0.826 5.826 13 O -0.594 6.594 14 C -0.077 4.077 15 C -0.130 4.130 16 C -0.129 4.129 17 C 0.184 3.816 18 N -0.620 5.620 19 C -0.242 4.242 20 H 0.066 0.934 21 C -0.057 4.057 22 N -0.944 5.944 23 Si 0.971 3.029 24 H -0.289 1.289 25 H -0.280 1.280 26 H -0.282 1.282 27 C 0.130 3.870 28 H 0.066 0.934 29 H 0.063 0.937 30 H 0.078 0.922 31 H 0.410 0.590 32 H 0.111 0.889 33 H 0.144 0.856 34 H 0.159 0.841 35 H 0.167 0.833 36 H 0.418 0.582 37 H 0.413 0.587 38 H 0.119 0.881 39 H 0.121 0.879 40 H 0.100 0.900 41 H 0.087 0.913 42 H 0.021 0.979 43 H 0.006 0.994 44 H 0.248 0.752 45 H 0.019 0.981 46 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.763 19.346 -3.439 25.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.083 3.917 3 N -0.351 5.351 4 C 0.302 3.698 5 O -0.449 6.449 6 C -0.142 4.142 7 C -0.039 4.039 8 C -0.132 4.132 9 C -0.092 4.092 10 C -0.164 4.164 11 C 0.349 3.651 12 N -0.391 5.391 13 O -0.476 6.476 14 C -0.096 4.096 15 C -0.148 4.148 16 C -0.167 4.167 17 C 0.060 3.940 18 N -0.346 5.346 19 C -0.371 4.371 20 H 0.084 0.916 21 C -0.250 4.250 22 N -0.593 5.593 23 Si 0.800 3.200 24 H -0.214 1.214 25 H -0.206 1.206 26 H -0.209 1.209 27 C 0.003 3.997 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.097 0.903 31 H 0.245 0.755 32 H 0.129 0.871 33 H 0.162 0.838 34 H 0.176 0.824 35 H 0.184 0.816 36 H 0.251 0.749 37 H 0.245 0.755 38 H 0.137 0.863 39 H 0.139 0.861 40 H 0.118 0.882 41 H 0.105 0.895 42 H 0.039 0.961 43 H 0.024 0.976 44 H 0.057 0.943 45 H 0.037 0.963 46 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -15.621 18.916 -2.269 24.637 hybrid contribution 1.374 -0.599 0.651 1.634 sum -14.247 18.318 -1.618 23.262 Atomic orbital electron populations 1.21943 0.92013 1.02814 1.03273 1.21297 0.94048 0.81336 0.95049 1.45789 1.48881 1.10914 1.29538 1.20879 0.80559 0.87780 0.80577 1.90659 1.37381 1.79348 1.37485 1.20814 1.02966 0.90825 0.99591 1.19749 0.95104 0.95023 0.93994 1.21303 0.94706 0.96697 1.00480 1.21573 0.99523 0.97521 0.90543 1.19934 0.98046 1.03415 0.94958 1.18479 0.81219 0.78278 0.87162 1.43529 1.23901 1.52833 1.18842 1.90790 1.61498 1.64569 1.30697 1.21225 0.94951 0.94769 0.98662 1.21117 1.01133 0.99608 0.92966 1.23094 0.96660 1.00026 0.96914 1.20959 0.93090 0.97411 0.82584 1.44681 1.08284 1.79006 1.02672 1.19256 0.90692 1.37956 0.89243 0.91583 1.25480 0.99862 1.02242 0.97453 1.70129 1.24342 1.54491 1.10344 0.85269 0.78885 0.78073 0.77800 1.21449 1.20649 1.20884 1.22026 0.86240 0.94946 0.96466 0.91541 0.91767 0.90323 0.75455 0.87065 0.83786 0.82374 0.81570 0.74922 0.75456 0.86272 0.86105 0.88156 0.89478 0.96104 0.97620 0.94269 0.96321 0.95722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.85 8.59 71.98 0.62 -3.23 16 2 C 0.17 5.51 0.82 5.07 0.00 5.52 16 3 N -0.70 -19.68 5.19 -416.31 -2.16 -21.84 16 4 C 0.51 14.48 7.21 87.66 0.63 15.12 16 5 O -0.57 -20.35 12.87 -3.02 -0.04 -20.39 16 6 C -0.10 -1.97 5.82 29.10 0.17 -1.80 16 7 C -0.04 -0.82 4.38 -19.81 -0.09 -0.91 16 8 C -0.11 -1.89 9.68 22.23 0.22 -1.67 16 9 C -0.07 -1.12 9.54 22.53 0.21 -0.90 16 10 C -0.16 -3.55 5.87 -20.09 -0.12 -3.67 16 11 C 0.56 12.64 8.05 86.79 0.70 13.34 16 12 N -0.83 -9.32 8.83 -175.59 -1.55 -10.87 16 13 O -0.59 -19.05 17.18 -3.89 -0.07 -19.12 16 14 C -0.08 -2.05 9.60 22.52 0.22 -1.83 16 15 C -0.13 -3.36 9.68 22.23 0.22 -3.15 16 16 C -0.13 -4.14 5.97 31.78 0.19 -3.95 16 17 C 0.18 8.58 5.37 86.73 0.47 9.05 16 18 N -0.62 -32.00 3.39 -691.55 -2.35 -34.35 16 19 C -0.24 -13.97 10.28 84.03 0.86 -13.10 16 20 H 0.07 3.81 7.83 -2.91 -0.02 3.79 16 21 C -0.06 -3.25 5.49 84.86 0.47 -2.79 16 22 N -0.94 -55.59 10.31 21.65 0.22 -55.36 16 23 Si 0.97 46.48 29.55 68.60 2.03 48.51 16 24 H -0.29 -13.64 7.11 99.48 0.71 -12.94 16 25 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 26 H -0.28 -13.29 7.11 99.48 0.71 -12.59 16 27 C 0.13 5.68 6.18 86.93 0.54 6.22 16 28 H 0.07 1.73 8.07 -2.38 -0.02 1.71 16 29 H 0.06 1.98 5.92 -2.39 -0.01 1.97 16 30 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.41 9.71 8.51 -92.71 -0.79 8.92 16 32 H 0.11 2.08 8.08 -2.39 -0.02 2.06 16 33 H 0.14 1.56 8.08 -2.39 -0.02 1.54 16 34 H 0.16 1.62 8.06 -2.91 -0.02 1.60 16 35 H 0.17 0.97 6.40 -2.91 -0.02 0.95 16 36 H 0.42 1.71 6.86 -92.71 -0.64 1.08 16 37 H 0.41 3.58 8.93 -92.71 -0.83 2.75 16 38 H 0.12 3.39 7.65 -2.91 -0.02 3.37 16 39 H 0.12 3.19 8.06 -2.91 -0.02 3.17 16 40 H 0.10 2.55 8.09 -2.39 -0.02 2.53 16 41 H 0.09 2.59 8.04 -2.39 -0.02 2.57 16 42 H 0.02 1.06 7.38 -2.39 -0.02 1.04 16 43 H 0.01 0.30 7.50 -2.39 -0.02 0.28 16 44 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 45 H 0.02 0.84 7.99 -2.39 -0.02 0.82 16 46 H 0.02 1.19 6.89 -2.38 -0.02 1.17 16 Total: -1.00 -82.81 375.95 0.17 -82.64 By element: Atomic # 1 Polarization: 19.75 SS G_CDS: -1.21 Total: 18.53 kcal Atomic # 6 Polarization: 6.93 SS G_CDS: 5.30 Total: 12.23 kcal Atomic # 7 Polarization: -116.58 SS G_CDS: -5.83 Total: -122.41 kcal Atomic # 8 Polarization: -39.40 SS G_CDS: -0.11 Total: -39.50 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 2.03 Total: 48.51 kcal Total: -82.81 0.17 -82.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671694629.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.902 kcal (2) G-P(sol) polarization free energy of solvation -82.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds