Wall clock time and date at job start Tue Mar 31 2020 17:18:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46496 * 110.88546 * 2 1 4 4 C 1.34775 * 120.00168 * 300.70036 * 3 2 1 5 5 O 1.21286 * 119.99975 * 0.02562 * 4 3 2 6 6 C 1.50697 * 120.00114 * 180.02562 * 4 3 2 7 7 C 1.50704 * 109.47512 * 180.02562 * 6 4 3 8 8 C 1.38358 * 119.85055 * 89.99766 * 7 6 4 9 9 C 1.37961 * 120.14201 * 179.97438 * 8 7 6 10 10 C 1.39580 * 119.85094 * 0.02562 * 9 8 7 11 11 C 1.47844 * 120.13929 * 180.02562 * 10 9 8 12 12 N 1.34783 * 119.99598 * 179.97438 * 11 10 9 13 13 O 1.21552 * 120.00604 * 0.02562 * 11 10 9 14 14 C 1.39573 * 119.71203 * 359.97326 * 10 9 8 15 15 C 1.37957 * 119.85592 * 0.05027 * 14 10 9 16 16 C 1.55155 * 111.00292 * 123.88333 * 2 1 3 17 17 C 1.54321 * 102.94217 * 153.61222 * 16 2 1 18 18 N 1.47018 * 107.27059 * 337.80717 * 17 16 2 19 19 C 1.36943 * 125.64831 * 178.97706 * 18 17 16 20 20 H 1.07997 * 120.00153 * 174.78977 * 19 18 17 21 21 C 1.38806 * 119.99937 * 354.79177 * 19 18 17 22 22 N 1.31624 * 120.00148 * 7.05219 * 21 19 18 23 23 Si 1.86797 * 120.00189 * 187.05332 * 21 19 18 24 24 H 1.48501 * 109.47161 * 94.98292 * 23 21 19 25 25 H 1.48492 * 109.47442 * 214.98782 * 23 21 19 26 26 H 1.48503 * 109.46998 * 334.98799 * 23 21 19 27 27 C 1.47526 * 108.71806 * 358.94218 * 18 17 16 28 28 H 1.09004 * 109.47321 * 59.29668 * 1 2 3 29 29 H 1.08996 * 109.47104 * 179.29932 * 1 2 3 30 30 H 1.08995 * 109.47239 * 299.30097 * 1 2 3 31 31 H 0.97003 * 119.99831 * 120.70454 * 3 2 1 32 32 H 1.09002 * 109.46949 * 59.99976 * 6 4 3 33 33 H 1.09002 * 109.47499 * 300.00402 * 6 4 3 34 34 H 1.07998 * 119.93000 * 359.95931 * 8 7 6 35 35 H 1.08004 * 120.07385 * 179.72610 * 9 8 7 36 36 H 0.96998 * 120.00016 * 359.97438 * 12 11 10 37 37 H 0.97009 * 119.99428 * 180.02562 * 12 11 10 38 38 H 1.08001 * 120.06987 * 180.02562 * 14 10 9 39 39 H 1.08000 * 119.92677 * 179.97438 * 15 14 10 40 40 H 1.09000 * 110.71984 * 271.97718 * 16 2 1 41 41 H 1.08998 * 110.71891 * 35.24490 * 16 2 1 42 42 H 1.09002 * 109.88023 * 97.21906 * 17 16 2 43 43 H 1.08993 * 109.88282 * 218.38594 * 17 16 2 44 44 H 0.97002 * 119.99914 * 179.97438 * 22 21 19 45 45 H 1.09004 * 110.37207 * 265.31018 * 27 18 17 46 46 H 1.09000 * 110.41519 * 142.95293 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0523 1.3687 0.0000 4 6 1.7358 2.2108 -1.0036 5 8 1.0182 1.8355 -1.9065 6 6 2.2735 3.6185 -1.0039 7 6 1.7743 4.3468 -2.2252 8 6 0.5827 5.0477 -2.1699 9 6 0.1203 5.7170 -3.2842 10 6 0.8573 5.6854 -4.4691 11 6 0.3680 6.4009 -5.6669 12 7 1.0823 6.3689 -6.8095 13 8 -0.6778 7.0186 -5.6210 14 6 2.0586 4.9765 -4.5180 15 6 2.5094 4.3111 -3.3967 16 6 2.0861 -0.8075 1.2025 17 6 3.4678 -1.2731 0.6968 18 7 3.4280 -1.2422 -0.7725 19 6 4.4653 -1.5654 -1.6060 20 1 4.3113 -1.5920 -2.6746 21 6 5.7148 -1.8590 -1.0774 22 7 5.8702 -1.9632 0.2255 23 14 7.1756 -2.1063 -2.2150 24 1 7.9229 -0.8296 -2.3457 25 1 8.0709 -3.1484 -1.6517 26 1 6.6944 -2.5372 -3.5521 27 6 2.0852 -0.8062 -1.2006 28 1 -0.3634 0.5247 -0.8836 29 1 -0.3633 -1.0276 -0.0126 30 1 -0.3633 0.5029 0.8961 31 1 2.6260 1.6689 0.7223 32 1 3.3631 3.5913 -1.0167 33 1 1.9337 4.1375 -0.1076 34 1 0.0131 5.0707 -1.2526 35 1 -0.8123 6.2601 -3.2411 36 1 1.9174 5.8768 -6.8458 37 1 0.7614 6.8386 -7.5953 38 1 2.6337 4.9486 -5.4317 39 1 3.4386 3.7619 -3.4334 40 1 2.1915 -0.1694 2.0799 41 1 1.4470 -1.6630 1.4211 42 1 4.2425 -0.5982 1.0609 43 1 3.6658 -2.2881 1.0410 44 1 6.7433 -2.1687 0.5948 45 1 1.4521 -1.6702 -1.4027 46 1 2.1553 -0.1713 -2.0839 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001671694631.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:18:37 Heat of formation + Delta-G solvation = -24.841283 kcal Electronic energy + Delta-G solvation = -28269.248595 eV Core-core repulsion = 24352.173713 eV Total energy + Delta-G solvation = -3917.074881 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.42248 -39.79069 -38.45378 -37.15949 -34.16729 -33.92190 -32.87399 -31.80788 -31.03739 -30.08360 -28.73165 -27.87660 -25.68217 -23.87943 -23.29715 -22.81179 -21.09144 -20.41372 -20.03263 -19.02159 -18.40630 -17.20577 -17.07829 -16.50020 -15.87824 -15.49184 -15.20693 -15.15433 -14.93085 -14.64128 -14.39983 -13.92613 -13.76745 -13.64399 -13.43573 -13.31366 -12.84211 -12.40634 -12.34694 -11.95526 -11.93484 -11.79719 -11.69439 -11.62467 -11.14783 -10.92235 -10.89816 -10.40223 -10.37187 -10.28882 -10.09252 -10.01567 -9.99184 -9.69551 -9.35699 -9.09725 -8.83747 -8.65815 -8.51753 -6.81791 -5.74376 -3.05011 0.67336 1.27755 2.65765 2.95712 3.26045 3.37218 3.43516 3.45264 3.46861 3.82870 4.46691 4.48562 4.58890 4.69934 4.82811 4.97725 5.10499 5.20638 5.22746 5.35834 5.41654 5.46151 5.48851 5.61104 5.70242 5.71323 5.88160 6.01073 6.11188 6.13203 6.15279 6.17209 6.35271 6.39073 6.42111 6.49138 6.53017 6.67859 6.74495 6.80821 7.05300 7.13323 7.51418 7.55725 7.78091 7.90617 7.99279 8.23936 8.58917 9.21134 9.81393 10.48188 11.37992 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.013183 B = 0.003036 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2123.405736 B = 9220.273465 C =10676.119199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.158 3.842 3 N -0.702 5.702 4 C 0.519 3.481 5 O -0.533 6.533 6 C -0.112 4.112 7 C -0.026 4.026 8 C -0.114 4.114 9 C -0.058 4.058 10 C -0.148 4.148 11 C 0.566 3.434 12 N -0.853 5.853 13 O -0.545 6.545 14 C -0.083 4.083 15 C -0.111 4.111 16 C -0.147 4.147 17 C 0.177 3.823 18 N -0.603 5.603 19 C -0.222 4.222 20 H 0.076 0.924 21 C -0.009 4.009 22 N -0.922 5.922 23 Si 0.908 3.092 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.281 1.281 27 C 0.133 3.867 28 H 0.074 0.926 29 H 0.061 0.939 30 H 0.048 0.952 31 H 0.398 0.602 32 H 0.107 0.893 33 H 0.102 0.898 34 H 0.128 0.872 35 H 0.134 0.866 36 H 0.402 0.598 37 H 0.403 0.597 38 H 0.125 0.875 39 H 0.131 0.869 40 H 0.064 0.936 41 H 0.072 0.928 42 H 0.047 0.953 43 H 0.041 0.959 44 H 0.251 0.749 45 H 0.024 0.976 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.497 15.071 -2.751 17.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.071 3.929 3 N -0.352 5.352 4 C 0.304 3.696 5 O -0.410 6.410 6 C -0.152 4.152 7 C -0.027 4.027 8 C -0.132 4.132 9 C -0.076 4.076 10 C -0.151 4.151 11 C 0.353 3.647 12 N -0.416 5.416 13 O -0.423 6.423 14 C -0.102 4.102 15 C -0.129 4.129 16 C -0.186 4.186 17 C 0.052 3.948 18 N -0.329 5.329 19 C -0.350 4.350 20 H 0.094 0.906 21 C -0.204 4.204 22 N -0.570 5.570 23 Si 0.739 3.261 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.207 1.207 27 C 0.006 3.994 28 H 0.093 0.907 29 H 0.080 0.920 30 H 0.068 0.932 31 H 0.232 0.768 32 H 0.125 0.875 33 H 0.121 0.879 34 H 0.146 0.854 35 H 0.152 0.848 36 H 0.231 0.769 37 H 0.234 0.766 38 H 0.143 0.857 39 H 0.149 0.851 40 H 0.082 0.918 41 H 0.090 0.910 42 H 0.065 0.935 43 H 0.059 0.941 44 H 0.061 0.939 45 H 0.041 0.959 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.472 15.046 -3.181 17.558 hybrid contribution 1.598 -0.247 -0.521 1.699 sum -6.874 14.799 -3.702 16.732 Atomic orbital electron populations 1.22006 0.94396 1.02122 1.02380 1.21454 0.92517 0.80867 0.98051 1.45799 1.51551 1.12268 1.25583 1.20183 0.80910 0.86495 0.82011 1.90682 1.37300 1.77501 1.35497 1.20801 1.03208 0.93620 0.97540 1.19557 0.94180 0.94529 0.94432 1.20972 0.95654 0.97757 0.98853 1.21177 0.98813 0.96533 0.91115 1.19799 0.97525 1.03209 0.94607 1.18344 0.83385 0.79559 0.83381 1.43770 1.27332 1.56639 1.13906 1.90799 1.23341 1.43625 1.84553 1.21189 0.94720 0.95815 0.98434 1.21006 1.00698 0.98996 0.92163 1.23223 1.00457 0.98930 0.95943 1.21154 0.90055 0.99828 0.83771 1.44472 1.08000 1.78717 1.01754 1.19059 0.87422 1.39365 0.89187 0.90620 1.24775 0.97465 1.02226 0.95982 1.69965 1.22416 1.55184 1.09467 0.86146 0.82866 0.77349 0.79755 1.21740 1.21818 1.20679 1.21890 0.87506 0.94829 0.95199 0.90720 0.91998 0.93243 0.76802 0.87514 0.87943 0.85415 0.84794 0.76853 0.76573 0.85739 0.85133 0.91769 0.90958 0.93501 0.94089 0.93872 0.95879 0.92884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 8.57 37.16 0.32 -1.94 16 2 C 0.16 2.68 0.82 -129.67 -0.11 2.58 16 3 N -0.70 -10.56 5.18 -45.63 -0.24 -10.79 16 4 C 0.52 7.77 7.20 -10.99 -0.08 7.69 16 5 O -0.53 -9.79 12.84 5.55 0.07 -9.72 16 6 C -0.11 -1.22 5.82 -29.03 -0.17 -1.39 16 7 C -0.03 -0.31 4.38 -104.53 -0.46 -0.77 16 8 C -0.11 -1.28 9.68 -39.64 -0.38 -1.67 16 9 C -0.06 -0.68 9.60 -39.18 -0.38 -1.05 16 10 C -0.15 -1.71 5.87 -104.97 -0.62 -2.33 16 11 C 0.57 6.60 8.05 -12.33 -0.10 6.50 16 12 N -0.85 -6.25 8.83 30.53 0.27 -5.98 16 13 O -0.55 -8.30 17.18 5.32 0.09 -8.21 16 14 C -0.08 -0.85 9.54 -39.19 -0.37 -1.22 16 15 C -0.11 -1.27 9.68 -39.64 -0.38 -1.65 16 16 C -0.15 -2.52 5.98 -24.90 -0.15 -2.67 16 17 C 0.18 4.05 5.37 -3.07 -0.02 4.04 16 18 N -0.60 -15.06 3.40 -170.00 -0.58 -15.64 16 19 C -0.22 -6.14 10.27 -15.06 -0.15 -6.29 16 20 H 0.08 2.08 7.84 -52.49 -0.41 1.67 16 21 C -0.01 -0.24 5.48 -17.43 -0.10 -0.33 16 22 N -0.92 -26.34 10.36 55.49 0.57 -25.77 16 23 Si 0.91 21.82 29.56 -169.99 -5.02 16.80 16 24 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 25 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 26 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 27 C 0.13 2.84 6.14 -2.47 -0.02 2.83 16 28 H 0.07 1.23 6.23 -51.93 -0.32 0.91 16 29 H 0.06 0.88 8.13 -51.93 -0.42 0.46 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.40 5.19 8.50 -40.82 -0.35 4.84 16 32 H 0.11 1.06 8.08 -51.93 -0.42 0.64 16 33 H 0.10 0.82 8.08 -51.93 -0.42 0.40 16 34 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 35 H 0.13 1.52 7.65 -52.48 -0.40 1.12 16 36 H 0.40 1.95 6.86 -40.82 -0.28 1.67 16 37 H 0.40 2.35 8.93 -40.82 -0.36 1.99 16 38 H 0.12 0.87 6.41 -52.49 -0.34 0.53 16 39 H 0.13 1.42 8.06 -52.49 -0.42 0.99 16 40 H 0.06 0.94 8.07 -51.93 -0.42 0.52 16 41 H 0.07 1.17 8.04 -51.93 -0.42 0.76 16 42 H 0.05 1.17 7.30 -51.93 -0.38 0.79 16 43 H 0.04 1.06 7.61 -51.93 -0.40 0.66 16 44 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 45 H 0.02 0.51 8.03 -51.93 -0.42 0.09 16 46 H 0.05 1.23 6.59 -51.93 -0.34 0.89 16 LS Contribution 376.02 15.07 5.67 5.67 Total: -1.00 -35.36 376.02 -8.82 -44.19 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: -6.50 Total: 7.13 kcal Atomic # 6 Polarization: 5.48 SS G_CDS: -3.16 Total: 2.32 kcal Atomic # 7 Polarization: -58.21 SS G_CDS: 0.03 Total: -58.18 kcal Atomic # 8 Polarization: -18.08 SS G_CDS: 0.16 Total: -17.92 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -35.36 -8.82 -44.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671694631.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.344 kcal (2) G-P(sol) polarization free energy of solvation -35.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds