Wall clock time and date at job start Tue Mar 31 2020 17:18:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46496 * 110.88546 * 2 1 4 4 C 1.34775 * 120.00168 * 300.70036 * 3 2 1 5 5 O 1.21286 * 119.99975 * 0.02562 * 4 3 2 6 6 C 1.50697 * 120.00114 * 180.02562 * 4 3 2 7 7 C 1.50704 * 109.47512 * 180.02562 * 6 4 3 8 8 C 1.38358 * 119.85055 * 89.99766 * 7 6 4 9 9 C 1.37961 * 120.14201 * 179.97438 * 8 7 6 10 10 C 1.39580 * 119.85094 * 0.02562 * 9 8 7 11 11 C 1.47844 * 120.13929 * 180.02562 * 10 9 8 12 12 N 1.34783 * 119.99598 * 179.97438 * 11 10 9 13 13 O 1.21552 * 120.00604 * 0.02562 * 11 10 9 14 14 C 1.39573 * 119.71203 * 359.97326 * 10 9 8 15 15 C 1.37957 * 119.85592 * 0.05027 * 14 10 9 16 16 C 1.55155 * 111.00292 * 123.88333 * 2 1 3 17 17 C 1.54321 * 102.94217 * 153.61222 * 16 2 1 18 18 N 1.47018 * 107.27059 * 337.80717 * 17 16 2 19 19 C 1.36943 * 125.64831 * 178.97706 * 18 17 16 20 20 H 1.07997 * 120.00153 * 174.78977 * 19 18 17 21 21 C 1.38806 * 119.99937 * 354.79177 * 19 18 17 22 22 N 1.31624 * 120.00148 * 7.05219 * 21 19 18 23 23 Si 1.86797 * 120.00189 * 187.05332 * 21 19 18 24 24 H 1.48501 * 109.47161 * 94.98292 * 23 21 19 25 25 H 1.48492 * 109.47442 * 214.98782 * 23 21 19 26 26 H 1.48503 * 109.46998 * 334.98799 * 23 21 19 27 27 C 1.47526 * 108.71806 * 358.94218 * 18 17 16 28 28 H 1.09004 * 109.47321 * 59.29668 * 1 2 3 29 29 H 1.08996 * 109.47104 * 179.29932 * 1 2 3 30 30 H 1.08995 * 109.47239 * 299.30097 * 1 2 3 31 31 H 0.97003 * 119.99831 * 120.70454 * 3 2 1 32 32 H 1.09002 * 109.46949 * 59.99976 * 6 4 3 33 33 H 1.09002 * 109.47499 * 300.00402 * 6 4 3 34 34 H 1.07998 * 119.93000 * 359.95931 * 8 7 6 35 35 H 1.08004 * 120.07385 * 179.72610 * 9 8 7 36 36 H 0.96998 * 120.00016 * 359.97438 * 12 11 10 37 37 H 0.97009 * 119.99428 * 180.02562 * 12 11 10 38 38 H 1.08001 * 120.06987 * 180.02562 * 14 10 9 39 39 H 1.08000 * 119.92677 * 179.97438 * 15 14 10 40 40 H 1.09000 * 110.71984 * 271.97718 * 16 2 1 41 41 H 1.08998 * 110.71891 * 35.24490 * 16 2 1 42 42 H 1.09002 * 109.88023 * 97.21906 * 17 16 2 43 43 H 1.08993 * 109.88282 * 218.38594 * 17 16 2 44 44 H 0.97002 * 119.99914 * 179.97438 * 22 21 19 45 45 H 1.09004 * 110.37207 * 265.31018 * 27 18 17 46 46 H 1.09000 * 110.41519 * 142.95293 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0523 1.3687 0.0000 4 6 1.7358 2.2108 -1.0036 5 8 1.0182 1.8355 -1.9065 6 6 2.2735 3.6185 -1.0039 7 6 1.7743 4.3468 -2.2252 8 6 0.5827 5.0477 -2.1699 9 6 0.1203 5.7170 -3.2842 10 6 0.8573 5.6854 -4.4691 11 6 0.3680 6.4009 -5.6669 12 7 1.0823 6.3689 -6.8095 13 8 -0.6778 7.0186 -5.6210 14 6 2.0586 4.9765 -4.5180 15 6 2.5094 4.3111 -3.3967 16 6 2.0861 -0.8075 1.2025 17 6 3.4678 -1.2731 0.6968 18 7 3.4280 -1.2422 -0.7725 19 6 4.4653 -1.5654 -1.6060 20 1 4.3113 -1.5920 -2.6746 21 6 5.7148 -1.8590 -1.0774 22 7 5.8702 -1.9632 0.2255 23 14 7.1756 -2.1063 -2.2150 24 1 7.9229 -0.8296 -2.3457 25 1 8.0709 -3.1484 -1.6517 26 1 6.6944 -2.5372 -3.5521 27 6 2.0852 -0.8062 -1.2006 28 1 -0.3634 0.5247 -0.8836 29 1 -0.3633 -1.0276 -0.0126 30 1 -0.3633 0.5029 0.8961 31 1 2.6260 1.6689 0.7223 32 1 3.3631 3.5913 -1.0167 33 1 1.9337 4.1375 -0.1076 34 1 0.0131 5.0707 -1.2526 35 1 -0.8123 6.2601 -3.2411 36 1 1.9174 5.8768 -6.8458 37 1 0.7614 6.8386 -7.5953 38 1 2.6337 4.9486 -5.4317 39 1 3.4386 3.7619 -3.4334 40 1 2.1915 -0.1694 2.0799 41 1 1.4470 -1.6630 1.4211 42 1 4.2425 -0.5982 1.0609 43 1 3.6658 -2.2881 1.0410 44 1 6.7433 -2.1687 0.5948 45 1 1.4521 -1.6702 -1.4027 46 1 2.1553 -0.1713 -2.0839 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001671694631.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:18:37 Heat of formation + Delta-G solvation = -50.810395 kcal Electronic energy + Delta-G solvation = -28270.374700 eV Core-core repulsion = 24352.173713 eV Total energy + Delta-G solvation = -3918.200987 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.42974 -40.91837 -39.49952 -38.54442 -35.61210 -34.99962 -33.92275 -33.33786 -31.87085 -31.66212 -30.34939 -28.81522 -27.49500 -25.45067 -24.37533 -23.64601 -22.38559 -21.85199 -21.16511 -20.37338 -19.20849 -18.93320 -17.91676 -17.84002 -17.16201 -16.69389 -16.43125 -16.27572 -16.03839 -15.85072 -15.65978 -15.40681 -15.18222 -14.76311 -14.56564 -14.30299 -14.12880 -13.86741 -13.56929 -13.44108 -13.30718 -13.13725 -12.89930 -12.75387 -12.69070 -12.62265 -12.07536 -12.00940 -11.96944 -11.94893 -11.68254 -11.52409 -11.23424 -10.77911 -10.67729 -10.58979 -9.94111 -9.88919 -9.74346 -8.84613 -7.85564 -5.17990 -0.19909 0.43337 1.45582 1.45996 1.55455 1.75132 1.81834 2.37792 2.49436 2.52250 2.91563 3.32622 3.60358 3.64494 3.73507 3.80752 3.90843 4.02222 4.08321 4.13612 4.22555 4.32812 4.40546 4.62917 4.66296 4.66521 4.72407 4.83219 4.89486 4.93224 4.95591 5.05007 5.05740 5.11728 5.26464 5.34686 5.39558 5.45260 5.57078 5.67439 5.74314 5.82050 5.82564 5.91788 6.21395 6.36010 6.75404 7.12987 7.23571 7.44277 7.78920 8.43887 9.24677 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.013183 B = 0.003036 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2123.405736 B = 9220.273465 C =10676.119199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.170 3.830 3 N -0.700 5.700 4 C 0.514 3.486 5 O -0.570 6.570 6 C -0.103 4.103 7 C -0.038 4.038 8 C -0.117 4.117 9 C -0.072 4.072 10 C -0.160 4.160 11 C 0.563 3.437 12 N -0.830 5.830 13 O -0.589 6.589 14 C -0.078 4.078 15 C -0.127 4.127 16 C -0.129 4.129 17 C 0.184 3.816 18 N -0.620 5.620 19 C -0.241 4.241 20 H 0.068 0.932 21 C -0.057 4.057 22 N -0.944 5.944 23 Si 0.971 3.029 24 H -0.283 1.283 25 H -0.294 1.294 26 H -0.275 1.275 27 C 0.130 3.870 28 H 0.058 0.942 29 H 0.068 0.932 30 H 0.076 0.924 31 H 0.410 0.590 32 H 0.118 0.882 33 H 0.137 0.863 34 H 0.145 0.855 35 H 0.131 0.869 36 H 0.416 0.584 37 H 0.413 0.587 38 H 0.156 0.844 39 H 0.134 0.866 40 H 0.099 0.901 41 H 0.086 0.914 42 H 0.023 0.977 43 H 0.003 0.997 44 H 0.248 0.752 45 H 0.017 0.983 46 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.357 16.067 -2.415 17.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.082 3.918 3 N -0.352 5.352 4 C 0.302 3.698 5 O -0.449 6.449 6 C -0.142 4.142 7 C -0.039 4.039 8 C -0.135 4.135 9 C -0.091 4.091 10 C -0.164 4.164 11 C 0.350 3.650 12 N -0.395 5.395 13 O -0.471 6.471 14 C -0.097 4.097 15 C -0.145 4.145 16 C -0.168 4.168 17 C 0.060 3.940 18 N -0.346 5.346 19 C -0.370 4.370 20 H 0.086 0.914 21 C -0.250 4.250 22 N -0.593 5.593 23 Si 0.800 3.200 24 H -0.210 1.210 25 H -0.220 1.220 26 H -0.200 1.200 27 C 0.004 3.996 28 H 0.077 0.923 29 H 0.087 0.913 30 H 0.095 0.905 31 H 0.246 0.754 32 H 0.136 0.864 33 H 0.155 0.845 34 H 0.163 0.837 35 H 0.149 0.851 36 H 0.248 0.752 37 H 0.245 0.755 38 H 0.173 0.827 39 H 0.152 0.848 40 H 0.117 0.883 41 H 0.105 0.895 42 H 0.041 0.959 43 H 0.021 0.979 44 H 0.057 0.943 45 H 0.035 0.965 46 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -8.307 16.052 -2.863 18.300 hybrid contribution 1.574 -0.604 -0.703 1.826 sum -6.733 15.449 -3.566 17.225 Atomic orbital electron populations 1.21917 0.92285 1.02761 1.02942 1.21257 0.93829 0.81407 0.95286 1.45789 1.51733 1.11407 1.26234 1.20871 0.80078 0.87796 0.81048 1.90671 1.38996 1.78485 1.36758 1.20810 1.03654 0.90936 0.98789 1.19743 0.94469 0.94769 0.94905 1.21166 0.95646 0.97332 0.99358 1.21323 0.99044 0.96988 0.91777 1.19941 0.98117 1.03666 0.94639 1.18452 0.83075 0.79162 0.84301 1.43596 1.27183 1.55686 1.12991 1.90775 1.25298 1.45694 1.85335 1.21471 0.94266 0.94567 0.99351 1.21234 1.01112 0.99445 0.92704 1.23095 0.96768 0.99998 0.96903 1.20950 0.93047 0.97270 0.82770 1.44712 1.08677 1.78640 1.02566 1.19303 0.88738 1.39541 0.89454 0.91399 1.25506 0.99718 1.02358 0.97435 1.70157 1.22541 1.55781 1.10782 0.85170 0.79509 0.77192 0.78143 1.21017 1.22028 1.20032 1.21981 0.86174 0.94881 0.96582 0.92315 0.91331 0.90488 0.75444 0.86399 0.84472 0.83683 0.85107 0.75169 0.75455 0.82689 0.84828 0.88275 0.89538 0.95916 0.97866 0.94311 0.96505 0.95071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.88 8.57 71.98 0.62 -3.26 16 2 C 0.17 5.49 0.82 5.00 0.00 5.50 16 3 N -0.70 -19.69 5.18 -416.66 -2.16 -21.85 16 4 C 0.51 14.61 7.20 87.66 0.63 15.24 16 5 O -0.57 -20.59 12.84 -3.05 -0.04 -20.63 16 6 C -0.10 -1.99 5.82 29.10 0.17 -1.82 16 7 C -0.04 -0.84 4.38 -19.81 -0.09 -0.92 16 8 C -0.12 -2.49 9.68 22.23 0.22 -2.27 16 9 C -0.07 -1.69 9.60 22.53 0.22 -1.47 16 10 C -0.16 -3.59 5.87 -20.09 -0.12 -3.71 16 11 C 0.56 12.77 8.05 86.79 0.70 13.47 16 12 N -0.83 -10.85 8.83 -175.60 -1.55 -12.40 16 13 O -0.59 -18.11 17.18 -3.88 -0.07 -18.18 16 14 C -0.08 -1.48 9.54 22.53 0.21 -1.27 16 15 C -0.13 -2.76 9.68 22.23 0.22 -2.54 16 16 C -0.13 -4.16 5.98 31.78 0.19 -3.97 16 17 C 0.18 8.51 5.37 86.73 0.47 8.98 16 18 N -0.62 -31.43 3.40 -691.75 -2.35 -33.78 16 19 C -0.24 -13.60 10.27 84.03 0.86 -12.73 16 20 H 0.07 3.82 7.84 -2.91 -0.02 3.79 16 21 C -0.06 -3.17 5.48 84.86 0.46 -2.70 16 22 N -0.94 -54.78 10.36 21.65 0.22 -54.55 16 23 Si 0.97 45.13 29.56 68.60 2.03 47.16 16 24 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 25 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 26 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 27 C 0.13 5.61 6.14 86.84 0.53 6.15 16 28 H 0.06 1.85 6.23 -2.39 -0.01 1.84 16 29 H 0.07 1.79 8.13 -2.39 -0.02 1.77 16 30 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.41 9.60 8.50 -92.71 -0.79 8.82 16 32 H 0.12 2.06 8.08 -2.39 -0.02 2.04 16 33 H 0.14 1.70 8.08 -2.39 -0.02 1.68 16 34 H 0.15 2.44 8.06 -2.91 -0.02 2.42 16 35 H 0.13 3.04 7.65 -2.91 -0.02 3.01 16 36 H 0.42 3.06 6.86 -92.71 -0.64 2.42 16 37 H 0.41 4.17 8.93 -92.70 -0.83 3.34 16 38 H 0.16 1.79 6.41 -2.91 -0.02 1.77 16 39 H 0.13 2.75 8.06 -2.91 -0.02 2.72 16 40 H 0.10 2.54 8.07 -2.39 -0.02 2.52 16 41 H 0.09 2.58 8.04 -2.39 -0.02 2.56 16 42 H 0.02 1.14 7.30 -2.39 -0.02 1.13 16 43 H 0.00 0.16 7.61 -2.39 -0.02 0.15 16 44 H 0.25 13.97 8.31 -92.71 -0.77 13.20 16 45 H 0.02 0.75 8.03 -2.38 -0.02 0.73 16 46 H 0.03 1.47 6.59 -2.39 -0.02 1.45 16 Total: -1.00 -79.41 376.02 0.17 -79.24 By element: Atomic # 1 Polarization: 23.54 SS G_CDS: -1.21 Total: 22.32 kcal Atomic # 6 Polarization: 7.37 SS G_CDS: 5.29 Total: 12.66 kcal Atomic # 7 Polarization: -116.75 SS G_CDS: -5.83 Total: -122.58 kcal Atomic # 8 Polarization: -38.70 SS G_CDS: -0.11 Total: -38.80 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -79.41 0.17 -79.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671694631.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.430 kcal (2) G-P(sol) polarization free energy of solvation -79.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds