Wall clock time and date at job start Tue Mar 31 2020 17:16:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50703 * 110.21429 * 2 1 4 4 O 1.21273 * 120.00295 * 94.52486 * 3 2 1 5 5 N 1.34788 * 119.99637 * 274.51906 * 3 2 1 6 6 C 1.46499 * 119.99538 * 179.97438 * 5 3 2 7 7 C 1.50700 * 109.46759 * 180.02562 * 6 5 3 8 8 C 1.38235 * 120.00095 * 90.00474 * 7 6 5 9 9 C 1.38229 * 120.00509 * 180.02562 * 8 7 6 10 10 C 1.38236 * 119.99837 * 359.94952 * 9 8 7 11 11 C 1.50700 * 120.00251 * 180.02562 * 10 9 8 12 12 N 1.46498 * 109.46769 * 90.00266 * 11 10 9 13 13 C 1.36943 * 119.99752 * 179.72432 * 12 11 10 14 14 H 1.08002 * 119.99793 * 0.27665 * 13 12 11 15 15 C 1.38811 * 120.00012 * 180.27737 * 13 12 11 16 16 N 1.31624 * 119.99698 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 120.00072 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47294 * 90.00155 * 17 15 13 19 19 H 1.48499 * 109.47218 * 210.00015 * 17 15 13 20 20 H 1.48496 * 109.47166 * 329.99846 * 17 15 13 21 21 C 1.38237 * 119.99834 * 0.28457 * 10 9 8 22 22 C 1.38235 * 120.00111 * 269.98288 * 7 6 5 23 23 C 1.54479 * 110.32109 * 121.97240 * 2 1 3 24 24 C 1.54633 * 101.76474 * 144.45953 * 23 2 1 25 25 C 1.51282 * 104.19278 * 335.20195 * 24 23 2 26 26 O 1.21288 * 124.94126 * 196.23241 * 25 24 23 27 27 N 1.34418 * 110.11922 * 16.25576 * 25 24 23 28 28 H 1.08999 * 109.47045 * 59.30472 * 1 2 3 29 29 H 1.08999 * 109.46884 * 179.29808 * 1 2 3 30 30 H 1.08994 * 109.47378 * 299.29958 * 1 2 3 31 31 H 0.96991 * 120.00045 * 0.02562 * 5 3 2 32 32 H 1.09000 * 109.46859 * 60.01124 * 6 5 3 33 33 H 1.08993 * 109.47526 * 300.00525 * 6 5 3 34 34 H 1.08004 * 119.99741 * 359.97438 * 8 7 6 35 35 H 1.08000 * 120.00220 * 179.97438 * 9 8 7 36 36 H 1.09004 * 109.47210 * 330.00623 * 11 10 9 37 37 H 1.08994 * 109.47121 * 210.00593 * 11 10 9 38 38 H 0.97001 * 120.00384 * 0.02562 * 12 11 10 39 39 H 0.96999 * 119.99739 * 180.02562 * 16 15 13 40 40 H 1.08000 * 119.99739 * 179.72353 * 21 10 9 41 41 H 1.08000 * 120.00082 * 0.02562 * 22 7 6 42 42 H 1.09000 * 110.97534 * 262.57781 * 23 2 1 43 43 H 1.09001 * 110.96546 * 26.34226 * 23 2 1 44 44 H 1.09004 * 110.48389 * 216.52814 * 24 23 2 45 45 H 1.08992 * 110.60041 * 93.93563 * 24 23 2 46 46 H 0.96999 * 124.35666 * 180.42596 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0507 1.4142 0.0000 4 8 2.3380 1.9546 1.0470 5 7 2.1972 2.0783 -1.1637 6 6 2.7029 3.4533 -1.1636 7 6 2.7709 3.9635 -2.5800 8 6 1.6821 4.6095 -3.1350 9 6 1.7442 5.0770 -4.4344 10 6 2.8956 4.8995 -5.1785 11 6 2.9636 5.4097 -6.5949 12 7 3.4689 6.7848 -6.5948 13 6 3.6226 7.4578 -7.7774 14 1 3.3670 6.9764 -8.7098 15 6 4.1068 8.7587 -7.7779 16 7 4.4187 9.3452 -6.6415 17 14 4.3157 9.6771 -9.3910 18 1 3.0628 10.4074 -9.7107 19 1 5.4352 10.6449 -9.2682 20 1 4.6151 8.7090 -10.4765 21 6 3.9828 4.2492 -4.6251 22 6 3.9223 3.7859 -3.3241 23 6 2.0665 -0.7671 1.2289 24 6 3.3311 -1.4436 0.6509 25 6 3.0536 -1.5422 -0.8330 26 8 3.6598 -2.2522 -1.6074 27 7 2.0380 -0.7282 -1.1686 28 1 -0.3633 0.5246 -0.8837 29 1 -0.3633 -1.0276 -0.0126 30 1 -0.3634 0.5029 0.8961 31 1 1.9672 1.6462 -2.0010 32 1 3.6990 3.4740 -0.7215 33 1 2.0336 4.0866 -0.5814 34 1 0.7825 4.7482 -2.5537 35 1 0.8934 5.5814 -4.8681 36 1 1.9674 5.3887 -7.0369 37 1 3.6329 4.7766 -7.1773 38 1 3.6988 7.2170 -5.7574 39 1 4.7567 10.2544 -6.6417 40 1 4.8807 4.1066 -5.2080 41 1 4.7730 3.2811 -2.8906 42 1 2.3253 -0.0805 2.0350 43 1 1.3465 -1.5116 1.5687 44 1 3.4631 -2.4364 1.0811 45 1 4.2125 -0.8291 0.8341 46 1 1.6857 -0.6344 -2.0675 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698716074.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:16:30 Heat of formation + Delta-G solvation = -38.574386 kcal Electronic energy + Delta-G solvation = -27267.305467 eV Core-core repulsion = 23349.635073 eV Total energy + Delta-G solvation = -3917.670393 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.57841 -39.69068 -39.04951 -36.91173 -35.69836 -34.44638 -32.31340 -31.70644 -31.41174 -30.78297 -30.15818 -27.27691 -25.51662 -24.57774 -23.11859 -22.55659 -22.30070 -21.21458 -20.58046 -20.35488 -18.73588 -17.32653 -17.23400 -16.49093 -16.09682 -15.88743 -15.44995 -15.21279 -14.82417 -14.69529 -14.59005 -14.42787 -14.14884 -13.86287 -13.41908 -13.30101 -13.23685 -13.20890 -13.10565 -12.85971 -12.74595 -12.40755 -12.11267 -11.91908 -11.70331 -11.59997 -11.13336 -10.90276 -10.86113 -10.78333 -10.62885 -10.31994 -10.09738 -9.81559 -9.56763 -9.44172 -8.94001 -8.75414 -8.50174 -6.98434 -5.80129 -3.10319 1.31512 1.57764 2.04680 2.13045 2.75272 2.84098 3.41202 3.46162 3.48165 3.68412 3.90051 3.94364 4.12346 4.31698 4.49914 4.57735 4.59968 4.75404 4.87582 4.95864 5.05117 5.11850 5.22185 5.24857 5.32106 5.35726 5.43235 5.47376 5.49736 5.52894 5.67999 5.78458 5.99631 6.09459 6.10702 6.14784 6.18633 6.43309 6.44329 6.53792 6.56658 6.62170 7.04630 7.07343 7.15949 7.65395 7.72177 7.76035 8.37516 9.49096 10.04577 10.40252 11.42283 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.025221 B = 0.001982 C = 0.001929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.926546 B =14120.913552 C =14514.210665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.142 3.858 3 C 0.510 3.490 4 O -0.531 6.531 5 N -0.714 5.714 6 C 0.164 3.836 7 C -0.128 4.128 8 C -0.103 4.103 9 C -0.106 4.106 10 C -0.062 4.062 11 C 0.184 3.816 12 N -0.727 5.727 13 C -0.243 4.243 14 H 0.072 0.928 15 C -0.013 4.013 16 N -0.931 5.931 17 Si 0.909 3.091 18 H -0.289 1.289 19 H -0.291 1.291 20 H -0.281 1.281 21 C -0.106 4.106 22 C -0.102 4.102 23 C -0.115 4.115 24 C -0.160 4.160 25 C 0.524 3.476 26 O -0.525 6.525 27 N -0.724 5.724 28 H 0.068 0.932 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.401 0.599 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.119 0.881 35 H 0.124 0.876 36 H 0.029 0.971 37 H 0.029 0.971 38 H 0.386 0.614 39 H 0.256 0.744 40 H 0.124 0.876 41 H 0.118 0.882 42 H 0.110 0.890 43 H 0.094 0.906 44 H 0.107 0.893 45 H 0.107 0.893 46 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.104 -21.962 17.521 29.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.051 3.949 3 C 0.294 3.706 4 O -0.406 6.406 5 N -0.365 5.365 6 C 0.042 3.958 7 C -0.128 4.128 8 C -0.122 4.122 9 C -0.125 4.125 10 C -0.063 4.063 11 C 0.057 3.943 12 N -0.371 5.371 13 C -0.374 4.374 14 H 0.090 0.910 15 C -0.209 4.209 16 N -0.579 5.579 17 Si 0.740 3.260 18 H -0.217 1.217 19 H -0.217 1.217 20 H -0.207 1.207 21 C -0.124 4.124 22 C -0.121 4.121 23 C -0.153 4.153 24 C -0.200 4.200 25 C 0.310 3.690 26 O -0.400 6.400 27 N -0.383 5.383 28 H 0.088 0.912 29 H 0.097 0.903 30 H 0.101 0.899 31 H 0.236 0.764 32 H 0.094 0.906 33 H 0.096 0.904 34 H 0.137 0.863 35 H 0.142 0.858 36 H 0.046 0.954 37 H 0.046 0.954 38 H 0.219 0.781 39 H 0.066 0.934 40 H 0.142 0.858 41 H 0.136 0.864 42 H 0.128 0.872 43 H 0.112 0.888 44 H 0.126 0.874 45 H 0.125 0.875 46 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -8.492 -21.896 17.804 29.471 hybrid contribution -0.049 0.819 -1.507 1.716 sum -8.541 -21.077 16.297 27.978 Atomic orbital electron populations 1.22065 0.90653 1.04101 1.04119 1.21246 0.96574 0.89206 0.87860 1.20713 0.78041 0.87850 0.84032 1.90729 1.49772 1.68916 1.31222 1.46128 1.66147 1.15290 1.08969 1.20217 1.00340 0.81458 0.93771 1.19647 0.95294 1.02775 0.95110 1.20975 0.97671 0.98195 0.95355 1.21125 0.98363 0.99059 0.93937 1.20407 0.93143 0.95202 0.97502 1.19714 0.97504 0.87957 0.89147 1.42336 1.78342 1.09268 1.07158 1.19237 1.36542 0.95349 0.86290 0.91046 1.24775 1.01891 0.97254 0.96981 1.69676 1.50222 1.13837 1.24197 0.86158 0.77354 0.79638 0.82833 1.21655 1.21716 1.20705 1.21140 0.98433 0.97821 0.95029 1.20996 0.97101 0.99700 0.94300 1.22680 0.96681 0.99730 0.96213 1.22421 1.00204 1.04347 0.92993 1.20925 0.78657 0.78210 0.91186 1.90797 1.51383 1.40429 1.57429 1.46370 1.36771 1.44212 1.10919 0.91249 0.90271 0.89865 0.76445 0.90575 0.90440 0.86322 0.85755 0.95365 0.95364 0.78052 0.93428 0.85759 0.86374 0.87151 0.88792 0.87432 0.87474 0.74847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.57 8.79 37.16 0.33 -0.24 16 2 C 0.14 0.81 1.13 -132.05 -0.15 0.66 16 3 C 0.51 4.43 6.74 -10.98 -0.07 4.35 16 4 O -0.53 -6.31 15.69 5.56 0.09 -6.23 16 5 N -0.71 -5.93 5.46 -61.47 -0.34 -6.26 16 6 C 0.16 1.65 5.80 -5.19 -0.03 1.62 16 7 C -0.13 -1.49 5.25 -104.62 -0.55 -2.03 16 8 C -0.10 -1.27 9.70 -39.59 -0.38 -1.65 16 9 C -0.11 -1.57 9.70 -39.59 -0.38 -1.96 16 10 C -0.06 -1.03 5.25 -104.62 -0.55 -1.58 16 11 C 0.18 3.68 6.39 -5.19 -0.03 3.64 16 12 N -0.73 -18.45 5.59 -61.09 -0.34 -18.79 16 13 C -0.24 -6.79 9.99 -15.06 -0.15 -6.94 16 14 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 15 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 16 N -0.93 -28.26 13.06 55.49 0.72 -27.53 16 17 Si 0.91 22.33 29.55 -169.99 -5.02 17.30 16 18 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 19 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 C -0.11 -1.61 9.70 -39.58 -0.38 -1.99 16 22 C -0.10 -1.31 9.70 -39.58 -0.38 -1.70 16 23 C -0.11 -0.57 6.15 -25.10 -0.15 -0.73 16 24 C -0.16 -0.98 6.85 -26.74 -0.18 -1.16 16 25 C 0.52 4.68 8.43 -10.86 -0.09 4.58 16 26 O -0.53 -7.02 18.03 5.55 0.10 -6.92 16 27 N -0.72 -4.54 4.91 -47.68 -0.23 -4.77 16 28 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.08 0.22 8.14 -51.93 -0.42 -0.21 16 30 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.40 2.79 7.76 -40.82 -0.32 2.47 16 32 H 0.08 0.81 8.09 -51.93 -0.42 0.39 16 33 H 0.08 0.79 8.08 -51.93 -0.42 0.37 16 34 H 0.12 1.20 8.06 -52.48 -0.42 0.78 16 35 H 0.12 1.79 8.06 -52.49 -0.42 1.37 16 36 H 0.03 0.56 8.09 -51.93 -0.42 0.14 16 37 H 0.03 0.56 8.08 -51.93 -0.42 0.14 16 38 H 0.39 10.46 7.66 -40.82 -0.31 10.15 16 39 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 40 H 0.12 1.87 8.06 -52.49 -0.42 1.44 16 41 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 42 H 0.11 0.65 6.91 -51.93 -0.36 0.29 16 43 H 0.09 0.28 7.92 -51.93 -0.41 -0.13 16 44 H 0.11 0.51 8.14 -51.93 -0.42 0.08 16 45 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.41 2.09 8.76 -40.82 -0.36 1.74 16 LS Contribution 389.10 15.07 5.86 5.86 Total: -1.00 -34.90 389.10 -9.22 -44.11 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: -6.79 Total: 8.80 kcal Atomic # 6 Polarization: -2.31 SS G_CDS: -3.27 Total: -5.58 kcal Atomic # 7 Polarization: -57.17 SS G_CDS: -0.19 Total: -57.35 kcal Atomic # 8 Polarization: -13.33 SS G_CDS: 0.19 Total: -13.14 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -34.90 -9.22 -44.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698716074.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.539 kcal (2) G-P(sol) polarization free energy of solvation -34.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds