Wall clock time and date at job start Tue Mar 31 2020 17:16:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50703 * 110.21429 * 2 1 4 4 O 1.21273 * 120.00295 * 94.52486 * 3 2 1 5 5 N 1.34788 * 119.99637 * 274.51906 * 3 2 1 6 6 C 1.46499 * 119.99538 * 179.97438 * 5 3 2 7 7 C 1.50700 * 109.46759 * 180.02562 * 6 5 3 8 8 C 1.38235 * 120.00095 * 90.00474 * 7 6 5 9 9 C 1.38229 * 120.00509 * 180.02562 * 8 7 6 10 10 C 1.38236 * 119.99837 * 359.94952 * 9 8 7 11 11 C 1.50700 * 120.00251 * 180.02562 * 10 9 8 12 12 N 1.46498 * 109.46769 * 90.00266 * 11 10 9 13 13 C 1.36943 * 119.99752 * 179.72432 * 12 11 10 14 14 H 1.08002 * 119.99793 * 0.27665 * 13 12 11 15 15 C 1.38811 * 120.00012 * 180.27737 * 13 12 11 16 16 N 1.31624 * 119.99698 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 120.00072 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47294 * 90.00155 * 17 15 13 19 19 H 1.48499 * 109.47218 * 210.00015 * 17 15 13 20 20 H 1.48496 * 109.47166 * 329.99846 * 17 15 13 21 21 C 1.38237 * 119.99834 * 0.28457 * 10 9 8 22 22 C 1.38235 * 120.00111 * 269.98288 * 7 6 5 23 23 C 1.54479 * 110.32109 * 121.97240 * 2 1 3 24 24 C 1.54633 * 101.76474 * 144.45953 * 23 2 1 25 25 C 1.51282 * 104.19278 * 335.20195 * 24 23 2 26 26 O 1.21288 * 124.94126 * 196.23241 * 25 24 23 27 27 N 1.34418 * 110.11922 * 16.25576 * 25 24 23 28 28 H 1.08999 * 109.47045 * 59.30472 * 1 2 3 29 29 H 1.08999 * 109.46884 * 179.29808 * 1 2 3 30 30 H 1.08994 * 109.47378 * 299.29958 * 1 2 3 31 31 H 0.96991 * 120.00045 * 0.02562 * 5 3 2 32 32 H 1.09000 * 109.46859 * 60.01124 * 6 5 3 33 33 H 1.08993 * 109.47526 * 300.00525 * 6 5 3 34 34 H 1.08004 * 119.99741 * 359.97438 * 8 7 6 35 35 H 1.08000 * 120.00220 * 179.97438 * 9 8 7 36 36 H 1.09004 * 109.47210 * 330.00623 * 11 10 9 37 37 H 1.08994 * 109.47121 * 210.00593 * 11 10 9 38 38 H 0.97001 * 120.00384 * 0.02562 * 12 11 10 39 39 H 0.96999 * 119.99739 * 180.02562 * 16 15 13 40 40 H 1.08000 * 119.99739 * 179.72353 * 21 10 9 41 41 H 1.08000 * 120.00082 * 0.02562 * 22 7 6 42 42 H 1.09000 * 110.97534 * 262.57781 * 23 2 1 43 43 H 1.09001 * 110.96546 * 26.34226 * 23 2 1 44 44 H 1.09004 * 110.48389 * 216.52814 * 24 23 2 45 45 H 1.08992 * 110.60041 * 93.93563 * 24 23 2 46 46 H 0.96999 * 124.35666 * 180.42596 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0507 1.4142 0.0000 4 8 2.3380 1.9546 1.0470 5 7 2.1972 2.0783 -1.1637 6 6 2.7029 3.4533 -1.1636 7 6 2.7709 3.9635 -2.5800 8 6 1.6821 4.6095 -3.1350 9 6 1.7442 5.0770 -4.4344 10 6 2.8956 4.8995 -5.1785 11 6 2.9636 5.4097 -6.5949 12 7 3.4689 6.7848 -6.5948 13 6 3.6226 7.4578 -7.7774 14 1 3.3670 6.9764 -8.7098 15 6 4.1068 8.7587 -7.7779 16 7 4.4187 9.3452 -6.6415 17 14 4.3157 9.6771 -9.3910 18 1 3.0628 10.4074 -9.7107 19 1 5.4352 10.6449 -9.2682 20 1 4.6151 8.7090 -10.4765 21 6 3.9828 4.2492 -4.6251 22 6 3.9223 3.7859 -3.3241 23 6 2.0665 -0.7671 1.2289 24 6 3.3311 -1.4436 0.6509 25 6 3.0536 -1.5422 -0.8330 26 8 3.6598 -2.2522 -1.6074 27 7 2.0380 -0.7282 -1.1686 28 1 -0.3633 0.5246 -0.8837 29 1 -0.3633 -1.0276 -0.0126 30 1 -0.3634 0.5029 0.8961 31 1 1.9672 1.6462 -2.0010 32 1 3.6990 3.4740 -0.7215 33 1 2.0336 4.0866 -0.5814 34 1 0.7825 4.7482 -2.5537 35 1 0.8934 5.5814 -4.8681 36 1 1.9674 5.3887 -7.0369 37 1 3.6329 4.7766 -7.1773 38 1 3.6988 7.2170 -5.7574 39 1 4.7567 10.2544 -6.6417 40 1 4.8807 4.1066 -5.2080 41 1 4.7730 3.2811 -2.8906 42 1 2.3253 -0.0805 2.0350 43 1 1.3465 -1.5116 1.5687 44 1 3.4631 -2.4364 1.0811 45 1 4.2125 -0.8291 0.8341 46 1 1.6857 -0.6344 -2.0675 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698716074.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:16:30 Heat of formation + Delta-G solvation = -63.705542 kcal Electronic energy + Delta-G solvation = -27268.395235 eV Core-core repulsion = 23349.635073 eV Total energy + Delta-G solvation = -3918.760162 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.19568 -40.64658 -39.96014 -37.63957 -36.96322 -35.85541 -33.79328 -32.39321 -32.06768 -31.88267 -31.51886 -28.55255 -26.37128 -25.71478 -24.36857 -23.65959 -23.43201 -21.86808 -21.65821 -21.03586 -19.40055 -19.35207 -17.86770 -17.36524 -16.99666 -16.82652 -16.63766 -16.33254 -16.13936 -15.76526 -15.48487 -15.26950 -15.03724 -14.95633 -14.76332 -14.42310 -14.37258 -14.06974 -13.72627 -13.58636 -13.56225 -13.30176 -13.19299 -13.12765 -13.00989 -12.78043 -12.22153 -12.13422 -12.01819 -11.98371 -11.94082 -11.76219 -11.56669 -11.04808 -11.00580 -10.25322 -10.20202 -9.85147 -9.64839 -9.05796 -7.97917 -5.28453 0.21014 0.47431 1.37370 1.45585 1.46296 1.48223 1.56842 2.07788 2.23613 2.53559 2.84460 3.19064 3.35188 3.45563 3.58286 3.65301 3.82560 3.86485 4.01686 4.07034 4.10226 4.21861 4.26057 4.34239 4.53247 4.63948 4.66240 4.67140 4.77986 4.82676 4.86634 4.87083 4.99938 5.04622 5.06205 5.16689 5.19045 5.27548 5.42942 5.45528 5.56141 5.63257 5.78624 5.87059 6.03224 6.22875 6.39876 7.05436 7.11865 7.29446 8.02078 8.27193 9.25335 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.025221 B = 0.001982 C = 0.001929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.926546 B =14120.913552 C =14514.210665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.147 3.853 3 C 0.510 3.490 4 O -0.563 6.563 5 N -0.709 5.709 6 C 0.170 3.830 7 C -0.111 4.111 8 C -0.095 4.095 9 C -0.114 4.114 10 C -0.086 4.086 11 C 0.185 3.815 12 N -0.739 5.739 13 C -0.249 4.249 14 H 0.078 0.922 15 C -0.076 4.076 16 N -0.969 5.969 17 Si 0.978 3.022 18 H -0.285 1.285 19 H -0.295 1.295 20 H -0.268 1.268 21 C -0.117 4.117 22 C -0.101 4.101 23 C -0.109 4.109 24 C -0.157 4.157 25 C 0.518 3.482 26 O -0.577 6.577 27 N -0.712 5.712 28 H 0.074 0.926 29 H 0.095 0.905 30 H 0.086 0.914 31 H 0.409 0.591 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.147 0.853 35 H 0.124 0.876 36 H 0.032 0.968 37 H 0.028 0.972 38 H 0.373 0.627 39 H 0.252 0.748 40 H 0.118 0.882 41 H 0.136 0.864 42 H 0.104 0.896 43 H 0.121 0.879 44 H 0.123 0.877 45 H 0.103 0.897 46 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.580 -23.211 18.518 31.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.057 3.943 3 C 0.294 3.706 4 O -0.440 6.440 5 N -0.360 5.360 6 C 0.047 3.953 7 C -0.111 4.111 8 C -0.113 4.113 9 C -0.133 4.133 10 C -0.087 4.087 11 C 0.059 3.941 12 N -0.382 5.382 13 C -0.380 4.380 14 H 0.096 0.904 15 C -0.268 4.268 16 N -0.620 5.620 17 Si 0.806 3.194 18 H -0.212 1.212 19 H -0.222 1.222 20 H -0.193 1.193 21 C -0.136 4.136 22 C -0.119 4.119 23 C -0.147 4.147 24 C -0.197 4.197 25 C 0.306 3.694 26 O -0.456 6.456 27 N -0.369 5.369 28 H 0.093 0.907 29 H 0.114 0.886 30 H 0.105 0.895 31 H 0.245 0.755 32 H 0.090 0.910 33 H 0.100 0.900 34 H 0.165 0.835 35 H 0.142 0.858 36 H 0.050 0.950 37 H 0.046 0.954 38 H 0.205 0.795 39 H 0.061 0.939 40 H 0.136 0.864 41 H 0.153 0.847 42 H 0.122 0.878 43 H 0.139 0.861 44 H 0.141 0.859 45 H 0.121 0.879 46 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -10.019 -23.177 18.776 31.465 hybrid contribution 0.368 1.134 -1.739 2.108 sum -9.651 -22.043 17.037 29.484 Atomic orbital electron populations 1.22095 0.88533 1.05370 1.04620 1.21319 0.97938 0.87222 0.87855 1.21211 0.77220 0.88758 0.83363 1.90723 1.51136 1.69881 1.32291 1.46044 1.65826 1.14670 1.09496 1.20095 1.00467 0.82445 0.92310 1.19801 0.94471 1.01307 0.95566 1.21214 0.98805 0.96942 0.94357 1.21196 0.97717 0.99426 0.94959 1.20164 0.94834 0.97402 0.96252 1.19768 0.96999 0.85424 0.91881 1.42540 1.78525 1.11218 1.05900 1.19667 1.35231 0.95691 0.87418 0.90381 1.25635 1.02494 0.98361 1.00330 1.69838 1.51837 1.13924 1.26368 0.85084 0.76981 0.78210 0.79129 1.21188 1.22175 1.19324 1.21156 0.97880 0.98433 0.96140 1.21171 0.98179 0.99240 0.93357 1.22740 0.96592 0.99926 0.95450 1.22454 1.00700 1.05393 0.91156 1.21384 0.78393 0.77619 0.92016 1.90770 1.53211 1.42721 1.58913 1.46345 1.35851 1.43109 1.11570 0.90687 0.88637 0.89481 0.75512 0.90993 0.89961 0.83528 0.85804 0.94990 0.95418 0.79502 0.93929 0.86402 0.84662 0.87779 0.86078 0.85880 0.87890 0.74173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.63 8.79 71.98 0.63 0.00 16 2 C 0.15 1.32 1.13 3.31 0.00 1.32 16 3 C 0.51 7.76 6.74 87.66 0.59 8.36 16 4 O -0.56 -12.43 15.69 -3.01 -0.05 -12.47 16 5 N -0.71 -10.15 5.46 -466.79 -2.55 -12.70 16 6 C 0.17 3.02 5.80 85.63 0.50 3.52 16 7 C -0.11 -2.36 5.25 -19.87 -0.10 -2.46 16 8 C -0.09 -2.13 9.70 22.27 0.22 -1.91 16 9 C -0.11 -3.30 9.70 22.27 0.22 -3.08 16 10 C -0.09 -2.89 5.25 -19.86 -0.10 -2.99 16 11 C 0.19 7.54 6.39 85.63 0.55 8.08 16 12 N -0.74 -38.31 5.59 -347.18 -1.94 -40.25 16 13 C -0.25 -14.01 9.99 84.03 0.84 -13.17 16 14 H 0.08 4.19 7.83 -2.91 -0.02 4.17 16 15 C -0.08 -4.40 5.50 84.86 0.47 -3.93 16 16 N -0.97 -59.99 13.06 21.65 0.28 -59.70 16 17 Si 0.98 46.24 29.55 68.60 2.03 48.27 16 18 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 19 H -0.30 -14.05 7.11 99.48 0.71 -13.35 16 20 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 21 C -0.12 -3.57 9.70 22.27 0.22 -3.35 16 22 C -0.10 -2.47 9.70 22.27 0.22 -2.25 16 23 C -0.11 -0.81 6.15 31.65 0.19 -0.61 16 24 C -0.16 -1.66 6.85 30.59 0.21 -1.45 16 25 C 0.52 8.68 8.43 87.90 0.74 9.42 16 26 O -0.58 -15.39 18.03 -3.06 -0.06 -15.45 16 27 N -0.71 -7.56 4.91 -423.35 -2.08 -9.64 16 28 H 0.07 0.27 8.14 -2.39 -0.02 0.25 16 29 H 0.09 0.15 8.14 -2.39 -0.02 0.13 16 30 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 31 H 0.41 4.68 7.76 -92.72 -0.72 3.96 16 32 H 0.07 1.40 8.09 -2.39 -0.02 1.38 16 33 H 0.08 1.45 8.08 -2.39 -0.02 1.43 16 34 H 0.15 2.48 8.06 -2.91 -0.02 2.45 16 35 H 0.12 3.51 8.06 -2.91 -0.02 3.49 16 36 H 0.03 1.27 8.09 -2.38 -0.02 1.26 16 37 H 0.03 1.13 8.08 -2.39 -0.02 1.11 16 38 H 0.37 20.85 7.66 -92.71 -0.71 20.14 16 39 H 0.25 15.07 8.31 -92.71 -0.77 14.29 16 40 H 0.12 3.63 8.06 -2.91 -0.02 3.61 16 41 H 0.14 2.81 8.06 -2.91 -0.02 2.79 16 42 H 0.10 1.00 6.91 -2.39 -0.02 0.99 16 43 H 0.12 0.27 7.92 -2.39 -0.02 0.25 16 44 H 0.12 0.92 8.14 -2.38 -0.02 0.90 16 45 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 46 H 0.42 3.45 8.76 -92.71 -0.81 2.64 16 Total: -1.00 -76.57 389.10 -0.20 -76.77 By element: Atomic # 1 Polarization: 30.90 SS G_CDS: -1.22 Total: 29.68 kcal Atomic # 6 Polarization: -9.89 SS G_CDS: 5.38 Total: -4.51 kcal Atomic # 7 Polarization: -116.00 SS G_CDS: -6.29 Total: -122.29 kcal Atomic # 8 Polarization: -27.82 SS G_CDS: -0.10 Total: -27.92 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 2.03 Total: 48.27 kcal Total: -76.57 -0.20 -76.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698716074.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.066 kcal (2) G-P(sol) polarization free energy of solvation -76.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds