Wall clock time and date at job start Tue Mar 31 2020 17:36:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46501 * 109.45994 * 2 1 4 4 C 1.34779 * 119.99595 * 299.96625 * 3 2 1 5 5 O 1.21366 * 119.99913 * 0.02562 * 4 3 2 6 6 C 1.49348 * 119.99855 * 180.02562 * 4 3 2 7 7 O 1.21374 * 120.00017 * 0.02562 * 6 4 3 8 8 N 1.34779 * 119.99855 * 179.97438 * 6 4 3 9 9 C 1.39728 * 119.99890 * 175.26806 * 8 6 4 10 10 C 1.38923 * 120.07811 * 214.97171 * 9 8 6 11 11 C 1.38101 * 119.92647 * 179.79296 * 10 9 8 12 12 C 1.38293 * 120.07384 * 0.46376 * 11 10 9 13 13 C 1.38295 * 120.15153 * 359.78766 * 12 11 10 14 14 C 1.38098 * 120.07503 * 359.97438 * 13 12 11 15 15 C 1.53045 * 109.45472 * 119.96644 * 2 1 3 16 16 C 1.53198 * 109.33410 * 181.36945 * 15 2 1 17 17 N 1.46925 * 108.77566 * 305.41540 * 16 15 2 18 18 C 1.36940 * 120.60301 * 233.58074 * 17 16 15 19 19 H 1.08006 * 119.99654 * 148.02035 * 18 17 16 20 20 C 1.38803 * 120.00345 * 328.02051 * 18 17 16 21 21 N 1.31615 * 120.00455 * 165.78524 * 20 18 17 22 22 Si 1.86803 * 119.99944 * 345.78285 * 20 18 17 23 23 H 1.48504 * 109.46876 * 90.75236 * 22 20 18 24 24 H 1.48490 * 109.47506 * 210.75269 * 22 20 18 25 25 H 1.48507 * 109.46931 * 330.75680 * 22 20 18 26 26 C 1.46928 * 118.76352 * 53.55577 * 17 16 15 27 27 C 1.53040 * 109.46201 * 240.03217 * 2 1 3 28 28 H 1.08999 * 109.47489 * 300.03448 * 1 2 3 29 29 H 1.09001 * 109.46974 * 60.03292 * 1 2 3 30 30 H 1.09004 * 109.47087 * 180.02562 * 1 2 3 31 31 H 0.97001 * 120.00323 * 119.97470 * 3 2 1 32 32 H 0.96995 * 120.00062 * 355.26575 * 8 6 4 33 33 H 1.07997 * 120.03728 * 0.02562 * 10 9 8 34 34 H 1.07997 * 119.96038 * 180.24854 * 11 10 9 35 35 H 1.07993 * 119.92603 * 179.77187 * 12 11 10 36 36 H 1.07995 * 119.96245 * 179.97438 * 13 12 11 37 37 H 1.08008 * 120.03418 * 179.97438 * 14 13 12 38 38 H 1.09002 * 109.50105 * 301.33594 * 15 2 1 39 39 H 1.09005 * 109.49925 * 61.40766 * 15 2 1 40 40 H 1.08994 * 109.58513 * 65.17491 * 16 15 2 41 41 H 1.09007 * 109.58471 * 185.59300 * 16 15 2 42 42 H 0.97006 * 120.00114 * 179.97438 * 21 20 18 43 43 H 1.09001 * 109.58617 * 186.62712 * 26 17 16 44 44 H 1.08994 * 109.70584 * 66.27497 * 26 17 16 45 45 H 1.08993 * 109.50218 * 298.56715 * 27 2 1 46 46 H 1.09001 * 109.49447 * 58.63462 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0181 1.3813 0.0000 4 6 1.6928 2.2109 -1.0112 5 8 0.9952 1.8137 -1.9215 6 6 2.1908 3.6189 -1.0116 7 8 2.8888 4.0160 -0.1015 8 7 1.8660 4.4483 -2.0231 9 6 2.2482 5.7914 -1.9753 10 6 1.4182 6.7708 -2.5064 11 6 1.7971 8.0978 -2.4537 12 6 3.0056 8.4512 -1.8817 13 6 3.8366 7.4784 -1.3568 14 6 3.4617 6.1500 -1.4017 15 6 2.0397 -0.7208 1.2502 16 6 3.5713 -0.6893 1.2647 17 7 4.0679 -1.2488 0.0002 18 6 4.9761 -2.2737 0.0002 19 1 4.9637 -3.0062 -0.7934 20 6 5.9125 -2.3713 1.0202 21 7 6.5945 -3.4850 1.1832 22 14 6.2048 -0.9216 2.1615 23 1 5.3036 -1.0277 3.3371 24 1 7.6176 -0.9285 2.6186 25 1 5.9252 0.3437 1.4362 26 6 3.5714 -0.6885 -1.2641 27 6 2.0399 -0.7208 -1.2500 28 1 -0.3634 0.5143 0.8896 29 1 -0.3633 0.5133 -0.8903 30 1 -0.3633 -1.0277 0.0005 31 1 2.5754 1.6988 0.7277 32 1 1.3669 4.1128 -2.7841 33 1 0.4761 6.4951 -2.9565 34 1 1.1505 8.8599 -2.8628 35 1 3.3012 9.4893 -1.8451 36 1 4.7799 7.7578 -0.9112 37 1 4.1114 5.3907 -0.9920 38 1 1.6571 -0.2208 2.1399 39 1 1.6972 -1.7556 1.2386 40 1 3.9146 0.3399 1.3682 41 1 3.9411 -1.2856 2.0989 42 1 7.2492 -3.5530 1.8958 43 1 3.9418 -1.2844 -2.0983 44 1 3.9143 0.3407 -1.3698 45 1 1.6979 -1.7556 -1.2383 46 1 1.6568 -0.2210 -2.1398 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699769119.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:54 Heat of formation + Delta-G solvation = -6.506143 kcal Electronic energy + Delta-G solvation = -28988.407731 eV Core-core repulsion = 25072.127921 eV Total energy + Delta-G solvation = -3916.279810 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.29107 -40.04398 -38.59706 -37.58799 -35.34796 -34.56676 -32.16286 -31.22504 -31.13977 -30.55030 -29.97635 -27.80851 -25.46320 -23.92073 -23.17483 -22.99264 -22.36785 -21.17892 -20.47792 -19.03888 -18.94464 -17.70553 -16.85667 -16.75538 -16.26176 -15.97474 -15.35649 -15.07030 -14.90477 -14.61162 -14.23599 -14.08739 -13.93643 -13.84193 -13.62921 -13.44617 -13.29418 -13.01009 -12.44224 -12.29644 -12.09695 -11.96523 -11.86615 -11.61614 -11.52152 -11.41063 -11.32421 -10.85539 -10.68140 -10.52245 -10.18946 -10.05581 -9.83715 -9.56421 -9.38936 -9.18587 -9.03426 -8.64506 -8.48301 -6.93244 -5.95965 -3.39037 0.81686 1.13309 1.47632 2.20323 3.09202 3.28031 3.46426 3.47809 3.48610 3.56610 4.30972 4.49663 4.62501 4.68138 4.89262 4.93370 4.97449 5.12835 5.16240 5.19783 5.22978 5.29894 5.38745 5.71232 5.73536 5.74485 5.90469 5.92013 5.97380 5.99488 6.02493 6.09360 6.17753 6.18885 6.28129 6.35386 6.39814 6.49386 6.56630 6.60093 6.65889 6.71400 6.83065 6.89647 7.33412 7.60521 7.95416 7.98602 8.32977 8.92010 9.69144 10.08192 11.20088 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.015348 B = 0.003331 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.900248 B = 8404.602815 C = 9558.005330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.180 3.820 3 N -0.677 5.677 4 C 0.512 3.488 5 O -0.518 6.518 6 C 0.507 3.493 7 O -0.498 6.498 8 N -0.648 5.648 9 C 0.141 3.859 10 C -0.141 4.141 11 C -0.103 4.103 12 C -0.134 4.134 13 C -0.102 4.102 14 C -0.120 4.120 15 C -0.139 4.139 16 C 0.121 3.879 17 N -0.604 5.604 18 C -0.260 4.260 19 H 0.085 0.915 20 C 0.024 3.976 21 N -0.912 5.912 22 Si 0.889 3.111 23 H -0.288 1.288 24 H -0.304 1.304 25 H -0.269 1.269 26 C 0.152 3.848 27 C -0.145 4.145 28 H 0.051 0.949 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.411 0.589 32 H 0.423 0.577 33 H 0.127 0.873 34 H 0.126 0.874 35 H 0.123 0.877 36 H 0.127 0.873 37 H 0.141 0.859 38 H 0.062 0.938 39 H 0.086 0.914 40 H 0.024 0.976 41 H 0.076 0.924 42 H 0.263 0.737 43 H 0.063 0.937 44 H 0.017 0.983 45 H 0.073 0.927 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.926 20.210 -5.653 24.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.096 3.904 3 N -0.329 5.329 4 C 0.292 3.708 5 O -0.395 6.395 6 C 0.289 3.711 7 O -0.371 6.371 8 N -0.295 5.295 9 C 0.048 3.952 10 C -0.162 4.162 11 C -0.122 4.122 12 C -0.153 4.153 13 C -0.120 4.120 14 C -0.140 4.140 15 C -0.178 4.178 16 C -0.004 4.004 17 N -0.328 5.328 18 C -0.389 4.389 19 H 0.102 0.898 20 C -0.175 4.175 21 N -0.555 5.555 22 Si 0.720 3.280 23 H -0.216 1.216 24 H -0.232 1.232 25 H -0.194 1.194 26 C 0.026 3.974 27 C -0.185 4.185 28 H 0.071 0.929 29 H 0.093 0.907 30 H 0.086 0.914 31 H 0.248 0.752 32 H 0.261 0.739 33 H 0.145 0.855 34 H 0.144 0.856 35 H 0.141 0.859 36 H 0.145 0.855 37 H 0.158 0.842 38 H 0.080 0.920 39 H 0.104 0.896 40 H 0.042 0.958 41 H 0.094 0.906 42 H 0.073 0.927 43 H 0.082 0.918 44 H 0.035 0.965 45 H 0.092 0.908 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -12.789 19.998 -5.530 24.373 hybrid contribution 0.307 0.731 0.786 1.116 sum -12.482 20.728 -4.744 24.657 Atomic orbital electron populations 1.22227 0.94374 1.02664 1.02668 1.20498 0.93404 0.78872 0.97647 1.46036 1.51015 1.11937 1.23954 1.19647 0.81899 0.85672 0.83595 1.90703 1.37216 1.76338 1.35273 1.20587 0.80993 0.87300 0.82196 1.90780 1.34589 1.76356 1.35363 1.43136 1.55979 1.07584 1.22791 1.17779 0.93964 0.82751 1.00752 1.20942 0.99277 0.92427 1.03510 1.20944 0.96752 0.95278 0.99226 1.21188 0.94975 0.99578 0.99560 1.21109 0.99820 0.92342 0.98758 1.21389 0.94940 0.97474 1.00147 1.22376 0.99244 1.01182 0.95014 1.21403 0.91140 0.97028 0.90874 1.44312 1.49124 1.40244 0.99160 1.18920 1.06969 1.01548 1.11421 0.89771 1.25395 0.96362 0.96900 0.98826 1.69774 1.27416 1.25098 1.33258 0.86886 0.76035 0.84559 0.80540 1.21558 1.23188 1.19417 1.20874 0.90855 0.96245 0.89418 1.22431 0.98848 1.00361 0.96843 0.92940 0.90679 0.91437 0.75204 0.73906 0.85482 0.85580 0.85913 0.85538 0.84159 0.91977 0.89567 0.95804 0.90574 0.92727 0.91828 0.96479 0.90789 0.90422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.09 8.40 37.16 0.31 -1.77 16 2 C 0.18 2.72 0.66 -131.77 -0.09 2.63 16 3 N -0.68 -9.99 4.09 -48.02 -0.20 -10.18 16 4 C 0.51 7.27 7.31 -11.63 -0.08 7.19 16 5 O -0.52 -7.65 12.70 5.48 0.07 -7.58 16 6 C 0.51 6.87 7.73 -11.63 -0.09 6.78 16 7 O -0.50 -7.76 13.91 5.48 0.08 -7.68 16 8 N -0.65 -7.17 5.32 -10.30 -0.05 -7.23 16 9 C 0.14 1.56 6.29 -83.75 -0.53 1.03 16 10 C -0.14 -1.24 9.97 -39.38 -0.39 -1.64 16 11 C -0.10 -0.81 10.04 -39.61 -0.40 -1.21 16 12 C -0.13 -1.10 10.04 -39.54 -0.40 -1.50 16 13 C -0.10 -0.98 10.04 -39.61 -0.40 -1.38 16 14 C -0.12 -1.41 8.70 -39.38 -0.34 -1.75 16 15 C -0.14 -2.25 4.96 -26.61 -0.13 -2.38 16 16 C 0.12 2.51 3.88 -3.71 -0.01 2.50 16 17 N -0.60 -14.01 2.73 -172.32 -0.47 -14.48 16 18 C -0.26 -7.19 10.04 -15.06 -0.15 -7.34 16 19 H 0.08 2.50 8.06 -52.48 -0.42 2.08 16 20 C 0.02 0.69 5.32 -17.44 -0.09 0.60 16 21 N -0.91 -27.89 13.97 55.49 0.78 -27.11 16 22 Si 0.89 22.34 24.29 -169.99 -4.13 18.21 16 23 H -0.29 -6.90 6.63 56.52 0.37 -6.52 16 24 H -0.30 -7.83 7.11 56.52 0.40 -7.43 16 25 H -0.27 -6.66 6.41 56.52 0.36 -6.30 16 26 C 0.15 3.03 6.26 -3.71 -0.02 3.01 16 27 C -0.15 -2.42 4.67 -26.61 -0.12 -2.54 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.07 1.02 6.17 -51.93 -0.32 0.70 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.41 6.14 6.74 -40.82 -0.28 5.86 16 32 H 0.42 3.86 8.30 -40.82 -0.34 3.52 16 33 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 34 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 35 H 0.12 0.72 8.06 -52.49 -0.42 0.29 16 36 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 37 H 0.14 1.88 6.23 -52.48 -0.33 1.56 16 38 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 39 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 40 H 0.02 0.49 5.63 -51.93 -0.29 0.20 16 41 H 0.08 1.74 4.63 -51.93 -0.24 1.50 16 42 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 43 H 0.06 1.29 7.93 -51.93 -0.41 0.88 16 44 H 0.02 0.35 7.74 -51.93 -0.40 -0.05 16 45 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 46 H 0.08 1.26 6.20 -51.93 -0.32 0.94 16 LS Contribution 360.32 15.07 5.43 5.43 Total: -1.00 -31.97 360.32 -7.80 -39.77 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: -6.36 Total: 8.64 kcal Atomic # 6 Polarization: 5.16 SS G_CDS: -2.94 Total: 2.22 kcal Atomic # 7 Polarization: -59.06 SS G_CDS: 0.05 Total: -59.01 kcal Atomic # 8 Polarization: -15.41 SS G_CDS: 0.15 Total: -15.26 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -4.13 Total: 18.21 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.97 -7.80 -39.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699769119.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.266 kcal (2) G-P(sol) polarization free energy of solvation -31.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds