Wall clock time and date at job start Tue Mar 31 2020 17:36:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46501 * 109.45994 * 2 1 4 4 C 1.34779 * 119.99595 * 299.96625 * 3 2 1 5 5 O 1.21366 * 119.99913 * 0.02562 * 4 3 2 6 6 C 1.49348 * 119.99855 * 180.02562 * 4 3 2 7 7 O 1.21374 * 120.00017 * 0.02562 * 6 4 3 8 8 N 1.34779 * 119.99855 * 179.97438 * 6 4 3 9 9 C 1.39728 * 119.99890 * 175.26806 * 8 6 4 10 10 C 1.38923 * 120.07811 * 214.97171 * 9 8 6 11 11 C 1.38101 * 119.92647 * 179.79296 * 10 9 8 12 12 C 1.38293 * 120.07384 * 0.46376 * 11 10 9 13 13 C 1.38295 * 120.15153 * 359.78766 * 12 11 10 14 14 C 1.38098 * 120.07503 * 359.97438 * 13 12 11 15 15 C 1.53045 * 109.45472 * 119.96644 * 2 1 3 16 16 C 1.53198 * 109.33410 * 181.36945 * 15 2 1 17 17 N 1.46925 * 108.77566 * 305.41540 * 16 15 2 18 18 C 1.36940 * 120.60301 * 233.58074 * 17 16 15 19 19 H 1.08006 * 119.99654 * 148.02035 * 18 17 16 20 20 C 1.38803 * 120.00345 * 328.02051 * 18 17 16 21 21 N 1.31615 * 120.00455 * 165.78524 * 20 18 17 22 22 Si 1.86803 * 119.99944 * 345.78285 * 20 18 17 23 23 H 1.48504 * 109.46876 * 90.75236 * 22 20 18 24 24 H 1.48490 * 109.47506 * 210.75269 * 22 20 18 25 25 H 1.48507 * 109.46931 * 330.75680 * 22 20 18 26 26 C 1.46928 * 118.76352 * 53.55577 * 17 16 15 27 27 C 1.53040 * 109.46201 * 240.03217 * 2 1 3 28 28 H 1.08999 * 109.47489 * 300.03448 * 1 2 3 29 29 H 1.09001 * 109.46974 * 60.03292 * 1 2 3 30 30 H 1.09004 * 109.47087 * 180.02562 * 1 2 3 31 31 H 0.97001 * 120.00323 * 119.97470 * 3 2 1 32 32 H 0.96995 * 120.00062 * 355.26575 * 8 6 4 33 33 H 1.07997 * 120.03728 * 0.02562 * 10 9 8 34 34 H 1.07997 * 119.96038 * 180.24854 * 11 10 9 35 35 H 1.07993 * 119.92603 * 179.77187 * 12 11 10 36 36 H 1.07995 * 119.96245 * 179.97438 * 13 12 11 37 37 H 1.08008 * 120.03418 * 179.97438 * 14 13 12 38 38 H 1.09002 * 109.50105 * 301.33594 * 15 2 1 39 39 H 1.09005 * 109.49925 * 61.40766 * 15 2 1 40 40 H 1.08994 * 109.58513 * 65.17491 * 16 15 2 41 41 H 1.09007 * 109.58471 * 185.59300 * 16 15 2 42 42 H 0.97006 * 120.00114 * 179.97438 * 21 20 18 43 43 H 1.09001 * 109.58617 * 186.62712 * 26 17 16 44 44 H 1.08994 * 109.70584 * 66.27497 * 26 17 16 45 45 H 1.08993 * 109.50218 * 298.56715 * 27 2 1 46 46 H 1.09001 * 109.49447 * 58.63462 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0181 1.3813 0.0000 4 6 1.6928 2.2109 -1.0112 5 8 0.9952 1.8137 -1.9215 6 6 2.1908 3.6189 -1.0116 7 8 2.8888 4.0160 -0.1015 8 7 1.8660 4.4483 -2.0231 9 6 2.2482 5.7914 -1.9753 10 6 1.4182 6.7708 -2.5064 11 6 1.7971 8.0978 -2.4537 12 6 3.0056 8.4512 -1.8817 13 6 3.8366 7.4784 -1.3568 14 6 3.4617 6.1500 -1.4017 15 6 2.0397 -0.7208 1.2502 16 6 3.5713 -0.6893 1.2647 17 7 4.0679 -1.2488 0.0002 18 6 4.9761 -2.2737 0.0002 19 1 4.9637 -3.0062 -0.7934 20 6 5.9125 -2.3713 1.0202 21 7 6.5945 -3.4850 1.1832 22 14 6.2048 -0.9216 2.1615 23 1 5.3036 -1.0277 3.3371 24 1 7.6176 -0.9285 2.6186 25 1 5.9252 0.3437 1.4362 26 6 3.5714 -0.6885 -1.2641 27 6 2.0399 -0.7208 -1.2500 28 1 -0.3634 0.5143 0.8896 29 1 -0.3633 0.5133 -0.8903 30 1 -0.3633 -1.0277 0.0005 31 1 2.5754 1.6988 0.7277 32 1 1.3669 4.1128 -2.7841 33 1 0.4761 6.4951 -2.9565 34 1 1.1505 8.8599 -2.8628 35 1 3.3012 9.4893 -1.8451 36 1 4.7799 7.7578 -0.9112 37 1 4.1114 5.3907 -0.9920 38 1 1.6571 -0.2208 2.1399 39 1 1.6972 -1.7556 1.2386 40 1 3.9146 0.3399 1.3682 41 1 3.9411 -1.2856 2.0989 42 1 7.2492 -3.5530 1.8958 43 1 3.9418 -1.2844 -2.0983 44 1 3.9143 0.3407 -1.3698 45 1 1.6979 -1.7556 -1.2383 46 1 1.6568 -0.2210 -2.1398 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699769119.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:53 Heat of formation + Delta-G solvation = -28.338995 kcal Electronic energy + Delta-G solvation = -28989.354475 eV Core-core repulsion = 25072.127921 eV Total energy + Delta-G solvation = -3917.226554 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.34313 -41.10526 -39.55775 -38.85929 -36.55433 -35.86086 -33.92299 -32.70186 -32.08056 -31.87046 -30.76740 -29.33571 -26.48553 -25.68880 -24.52734 -23.91405 -23.28326 -22.67773 -21.55657 -20.38456 -19.97443 -18.92373 -18.39066 -17.71574 -17.29975 -17.22475 -16.85639 -16.34068 -15.98076 -15.83983 -15.51910 -15.38499 -15.28075 -14.89275 -14.84839 -14.64406 -14.32204 -14.31270 -13.81073 -13.71891 -13.52386 -13.26573 -13.09396 -12.85743 -12.79846 -12.51611 -12.39510 -12.24096 -12.12678 -12.03900 -11.65806 -11.52034 -11.47544 -11.34495 -10.78372 -10.51047 -10.23751 -9.89906 -9.25951 -8.88317 -8.18033 -5.57243 -0.07065 0.43424 0.56546 1.20252 1.26509 1.40081 1.47819 2.03191 2.38435 2.48805 2.84340 3.08411 3.22628 3.30317 3.69053 3.86245 3.96679 3.96985 4.03927 4.27899 4.29048 4.41004 4.46789 4.51141 4.54073 4.54856 4.57563 4.74135 4.82055 4.87481 4.90604 5.02239 5.07481 5.08548 5.15480 5.22889 5.25816 5.26887 5.32066 5.47741 5.50117 5.59367 5.87089 5.88939 6.03896 6.11974 6.27974 6.61904 6.84289 6.90178 7.58428 8.00542 9.01952 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.015348 B = 0.003331 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.900248 B = 8404.602815 C = 9558.005330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.183 3.817 3 N -0.680 5.680 4 C 0.516 3.484 5 O -0.523 6.523 6 C 0.506 3.494 7 O -0.524 6.524 8 N -0.634 5.634 9 C 0.117 3.883 10 C -0.139 4.139 11 C -0.101 4.101 12 C -0.131 4.131 13 C -0.113 4.113 14 C -0.145 4.145 15 C -0.129 4.129 16 C 0.115 3.885 17 N -0.616 5.616 18 C -0.248 4.248 19 H 0.049 0.951 20 C -0.033 4.033 21 N -0.960 5.960 22 Si 0.952 3.048 23 H -0.266 1.266 24 H -0.314 1.314 25 H -0.264 1.264 26 C 0.151 3.849 27 C -0.134 4.134 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.411 0.589 32 H 0.431 0.569 33 H 0.150 0.850 34 H 0.159 0.841 35 H 0.150 0.850 36 H 0.137 0.863 37 H 0.115 0.885 38 H 0.094 0.906 39 H 0.085 0.915 40 H 0.030 0.970 41 H 0.056 0.944 42 H 0.262 0.738 43 H 0.049 0.951 44 H 0.017 0.983 45 H 0.072 0.928 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.523 23.369 -5.643 28.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.098 3.902 3 N -0.332 5.332 4 C 0.296 3.704 5 O -0.401 6.401 6 C 0.289 3.711 7 O -0.399 6.399 8 N -0.281 5.281 9 C 0.024 3.976 10 C -0.158 4.158 11 C -0.119 4.119 12 C -0.149 4.149 13 C -0.131 4.131 14 C -0.165 4.165 15 C -0.168 4.168 16 C -0.010 4.010 17 N -0.341 5.341 18 C -0.378 4.378 19 H 0.067 0.933 20 C -0.228 4.228 21 N -0.606 5.606 22 Si 0.781 3.219 23 H -0.193 1.193 24 H -0.243 1.243 25 H -0.189 1.189 26 C 0.026 3.974 27 C -0.173 4.173 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.097 0.903 31 H 0.248 0.752 32 H 0.271 0.729 33 H 0.168 0.832 34 H 0.176 0.824 35 H 0.168 0.832 36 H 0.155 0.845 37 H 0.133 0.867 38 H 0.113 0.887 39 H 0.103 0.897 40 H 0.048 0.952 41 H 0.074 0.926 42 H 0.071 0.929 43 H 0.068 0.932 44 H 0.035 0.965 45 H 0.091 0.909 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -15.446 23.198 -5.554 28.418 hybrid contribution 1.095 -0.187 0.637 1.281 sum -14.351 23.011 -4.917 27.561 Atomic orbital electron populations 1.22135 0.92010 1.03601 1.03209 1.20460 0.95013 0.78755 0.95957 1.46028 1.51213 1.11798 1.24211 1.19721 0.81573 0.85874 0.83253 1.90696 1.37455 1.76554 1.35365 1.20471 0.80953 0.87206 0.82513 1.90774 1.35927 1.76699 1.36536 1.43039 1.55142 1.07643 1.22256 1.17997 0.94518 0.82903 1.02207 1.21249 0.99648 0.92388 1.02556 1.21387 0.96857 0.95550 0.98135 1.21559 0.94668 1.00526 0.98169 1.21318 1.00779 0.91890 0.99162 1.21344 0.95529 0.97999 1.01661 1.22261 0.95536 1.01910 0.97079 1.21460 0.94336 0.96420 0.88743 1.44401 1.48814 1.39635 1.01282 1.18831 1.07540 1.01559 1.09880 0.93327 1.26023 0.96543 0.99136 1.01050 1.69912 1.28838 1.27175 1.34714 0.85868 0.75453 0.81243 0.79371 1.19256 1.24304 1.18876 1.20939 0.93259 0.95520 0.87680 1.22289 0.95884 1.00801 0.98353 0.91361 0.91171 0.90325 0.75245 0.72887 0.83216 0.82377 0.83200 0.84536 0.86748 0.88736 0.89656 0.95181 0.92603 0.92909 0.93203 0.96489 0.90899 0.89718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.42 8.40 71.98 0.60 -2.82 16 2 C 0.18 5.08 0.66 3.63 0.00 5.09 16 3 N -0.68 -18.82 4.09 -424.20 -1.74 -20.55 16 4 C 0.52 13.89 7.31 87.24 0.64 14.53 16 5 O -0.52 -14.48 12.70 -3.30 -0.04 -14.52 16 6 C 0.51 13.39 7.73 87.24 0.67 14.07 16 7 O -0.52 -16.36 13.91 -3.32 -0.05 -16.41 16 8 N -0.63 -13.42 5.32 -304.84 -1.62 -15.04 16 9 C 0.12 2.46 6.29 38.21 0.24 2.70 16 10 C -0.14 -2.07 9.97 22.40 0.22 -1.85 16 11 C -0.10 -1.23 10.04 22.25 0.22 -1.00 16 12 C -0.13 -1.77 10.04 22.30 0.22 -1.54 16 13 C -0.11 -2.07 10.04 22.25 0.22 -1.84 16 14 C -0.15 -3.43 8.70 22.40 0.19 -3.24 16 15 C -0.13 -3.86 4.96 30.68 0.15 -3.70 16 16 C 0.12 4.62 3.88 86.36 0.34 4.95 16 17 N -0.62 -28.66 2.73 -699.09 -1.91 -30.57 16 18 C -0.25 -14.14 10.04 84.03 0.84 -13.29 16 19 H 0.05 3.05 8.06 -2.91 -0.02 3.03 16 20 C -0.03 -1.92 5.32 84.86 0.45 -1.47 16 21 N -0.96 -60.68 13.97 21.65 0.30 -60.38 16 22 Si 0.95 46.85 24.29 68.60 1.67 48.51 16 23 H -0.27 -12.08 6.63 99.48 0.66 -11.42 16 24 H -0.31 -15.88 7.11 99.48 0.71 -15.17 16 25 H -0.26 -12.61 6.41 99.48 0.64 -11.97 16 26 C 0.15 6.03 6.26 86.36 0.54 6.57 16 27 C -0.13 -4.28 4.67 30.67 0.14 -4.14 16 28 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.07 1.70 6.17 -2.39 -0.01 1.68 16 30 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.41 11.56 6.74 -92.71 -0.62 10.94 16 32 H 0.43 7.27 8.30 -92.71 -0.77 6.50 16 33 H 0.15 1.48 8.06 -2.91 -0.02 1.46 16 34 H 0.16 0.91 8.06 -2.91 -0.02 0.89 16 35 H 0.15 1.18 8.06 -2.91 -0.02 1.15 16 36 H 0.14 2.06 8.06 -2.91 -0.02 2.04 16 37 H 0.11 3.24 6.23 -2.91 -0.02 3.22 16 38 H 0.09 2.27 8.14 -2.39 -0.02 2.26 16 39 H 0.08 2.61 8.14 -2.38 -0.02 2.59 16 40 H 0.03 1.19 5.63 -2.39 -0.01 1.17 16 41 H 0.06 2.47 4.63 -2.38 -0.01 2.46 16 42 H 0.26 15.73 8.31 -92.70 -0.77 14.96 16 43 H 0.05 2.08 7.93 -2.39 -0.02 2.06 16 44 H 0.02 0.69 7.74 -2.39 -0.02 0.67 16 45 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 46 H 0.08 2.62 6.20 -2.39 -0.01 2.61 16 Total: -1.00 -71.40 360.32 1.84 -69.56 By element: Atomic # 1 Polarization: 26.89 SS G_CDS: -0.49 Total: 26.40 kcal Atomic # 6 Polarization: 7.29 SS G_CDS: 5.71 Total: 13.01 kcal Atomic # 7 Polarization: -121.58 SS G_CDS: -4.97 Total: -126.55 kcal Atomic # 8 Polarization: -30.84 SS G_CDS: -0.09 Total: -30.93 kcal Atomic # 14 Polarization: 46.85 SS G_CDS: 1.67 Total: 48.51 kcal Total: -71.40 1.84 -69.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699769119.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.222 kcal (2) G-P(sol) polarization free energy of solvation -71.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds