Wall clock time and date at job start Tue Mar 31 2020 17:19:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 110.65473 * 2 1 4 4 N 1.46491 * 109.47366 * 56.80927 * 3 2 1 5 5 C 1.36938 * 120.00412 * 179.97438 * 4 3 2 6 6 H 1.08006 * 119.99607 * 0.02562 * 5 4 3 7 7 C 1.38811 * 120.00428 * 179.97438 * 5 4 3 8 8 N 1.31620 * 119.99686 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 119.99982 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47368 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47144 * 120.00604 * 9 7 5 12 12 H 1.48510 * 109.47018 * 240.00060 * 9 7 5 13 13 C 1.54620 * 110.73805 * 236.80945 * 2 1 3 14 14 C 1.54002 * 105.04162 * 263.32754 * 13 2 1 15 15 N 1.47481 * 107.08673 * 1.31058 * 14 13 2 16 16 C 1.34775 * 127.03750 * 154.51758 * 15 14 13 17 17 O 1.21550 * 120.00215 * 185.93200 * 16 15 14 18 18 C 1.47864 * 119.99567 * 5.93497 * 16 15 14 19 19 C 1.39710 * 120.06674 * 197.43864 * 18 16 15 20 20 C 1.38056 * 120.13982 * 180.29596 * 19 18 16 21 21 C 1.38098 * 120.29749 * 359.95591 * 20 19 18 22 22 C 1.39666 * 120.14813 * 0.04040 * 21 20 19 23 23 C 1.47855 * 120.07625 * 180.02562 * 22 21 20 24 24 N 1.34780 * 120.00228 * 359.97438 * 23 22 21 25 25 O 1.21555 * 120.00078 * 179.97438 * 23 22 21 26 26 C 1.39288 * 120.07522 * 17.70910 * 18 16 15 27 27 C 1.48117 * 105.93016 * 334.77502 * 15 14 13 28 28 H 1.09003 * 109.47386 * 183.19094 * 1 2 3 29 29 H 1.09005 * 109.47057 * 303.19076 * 1 2 3 30 30 H 1.09000 * 109.47488 * 63.19370 * 1 2 3 31 31 H 1.08997 * 109.47130 * 176.81277 * 3 2 1 32 32 H 1.09003 * 109.47116 * 296.80878 * 3 2 1 33 33 H 0.97001 * 120.00076 * 359.97438 * 4 3 2 34 34 H 0.97002 * 119.99648 * 179.97438 * 8 7 5 35 35 H 1.09007 * 110.32554 * 144.43590 * 13 2 1 36 36 H 1.09004 * 110.41344 * 22.26541 * 13 2 1 37 37 H 1.08997 * 109.91460 * 241.94117 * 14 13 2 38 38 H 1.09006 * 110.06958 * 120.75715 * 14 13 2 39 39 H 1.07996 * 119.92730 * 0.24798 * 19 18 16 40 40 H 1.07999 * 119.84868 * 179.97438 * 20 19 18 41 41 H 1.08005 * 119.92867 * 180.02562 * 21 20 19 42 42 H 0.97000 * 119.99489 * 359.97438 * 24 23 22 43 43 H 0.96997 * 120.00607 * 180.02562 * 24 23 22 44 44 H 1.08004 * 120.15134 * 359.75123 * 26 18 16 45 45 H 1.08999 * 110.66177 * 157.51232 * 27 15 14 46 46 H 1.09000 * 110.66873 * 280.62828 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0697 1.4317 0.0000 4 7 1.5345 2.1553 1.1558 5 6 1.8816 3.4633 1.3655 6 1 2.5497 3.9615 0.6785 7 6 1.3740 4.1492 2.4604 8 7 0.5595 3.5422 3.2973 9 14 1.8471 5.9336 2.7460 10 1 2.7687 6.3796 1.6705 11 1 0.6253 6.7776 2.7334 12 1 2.5237 6.0618 4.0617 13 6 2.0775 -0.7916 -1.2101 14 6 2.3806 -2.1989 -0.6631 15 7 1.9938 -2.2032 0.7601 16 6 1.6326 -3.2702 1.5000 17 8 1.2335 -3.1141 2.6374 18 6 1.7220 -4.6308 0.9280 19 6 1.0277 -5.6872 1.5228 20 6 1.1149 -6.9593 0.9935 21 6 1.8872 -7.1965 -0.1265 22 6 2.5864 -6.1494 -0.7310 23 6 3.4123 -6.4050 -1.9304 24 7 3.4916 -7.6496 -2.4414 25 8 4.0199 -5.4926 -2.4557 26 6 2.5031 -4.8631 -0.2017 27 6 2.0772 -0.7939 1.2083 28 1 -0.3634 -1.0261 0.0572 29 1 -0.3633 0.5626 0.8600 30 1 -0.3634 0.4634 -0.9172 31 1 3.1579 1.4097 0.0571 32 1 1.7641 1.9352 -0.9172 33 1 0.9342 1.7080 1.7726 34 1 0.2051 4.0214 4.0627 35 1 2.9892 -0.3267 -1.5855 36 1 1.3280 -0.8456 -1.9997 37 1 3.4450 -2.4133 -0.7592 38 1 1.8013 -2.9447 -1.2075 39 1 0.4220 -5.5084 2.3989 40 1 0.5765 -7.7725 1.4574 41 1 1.9509 -8.1939 -0.5358 42 1 3.0070 -8.3778 -2.0219 43 1 4.0337 -7.8175 -3.2280 44 1 3.0421 -4.0500 -0.6651 45 1 1.4539 -0.6325 2.0878 46 1 3.1112 -0.5157 1.4122 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699843549.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:19:03 Heat of formation + Delta-G solvation = -20.008580 kcal Electronic energy + Delta-G solvation = -28238.624344 eV Core-core repulsion = 24321.759024 eV Total energy + Delta-G solvation = -3916.865320 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.90898 -39.92845 -38.58495 -37.56087 -34.91989 -34.30738 -32.88265 -31.45673 -31.41243 -30.37572 -29.19770 -26.70034 -25.70470 -24.48851 -24.25876 -22.91202 -21.93563 -21.34445 -19.80373 -18.83087 -18.20440 -17.63203 -16.97710 -16.61995 -16.35162 -15.97873 -15.77635 -15.16519 -14.83319 -14.52814 -14.49295 -14.36105 -14.09119 -13.80940 -13.59532 -13.39301 -12.99263 -12.73283 -12.56601 -12.39936 -12.20012 -12.03796 -11.72450 -11.53762 -11.32245 -10.96609 -10.81507 -10.53824 -10.44446 -10.41757 -10.25408 -10.18903 -9.95529 -9.86167 -9.59956 -9.43750 -9.42254 -8.84900 -8.57547 -6.87933 -5.72220 -3.00993 0.28942 0.66783 2.26714 2.88302 2.92566 3.02521 3.46501 3.51904 3.54341 3.55419 4.16409 4.27710 4.39305 4.50926 4.62353 4.70601 4.81262 4.89475 4.95297 4.99819 5.21701 5.32437 5.41400 5.43621 5.55637 5.63111 5.71275 5.78477 5.84625 5.87138 5.94277 6.05137 6.10584 6.13387 6.18191 6.25511 6.30872 6.36148 6.43010 6.55794 6.70362 6.80296 6.82380 6.88877 7.57639 7.74362 7.77903 8.14232 8.46375 9.57710 10.15235 10.49660 11.50577 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.022532 B = 0.002535 C = 0.002357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.354206 B =11043.782502 C =11877.526928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.079 4.079 3 C 0.169 3.831 4 N -0.731 5.731 5 C -0.238 4.238 6 H 0.070 0.930 7 C -0.014 4.014 8 N -0.932 5.932 9 Si 0.906 3.094 10 H -0.281 1.281 11 H -0.292 1.292 12 H -0.292 1.292 13 C -0.125 4.125 14 C 0.094 3.906 15 N -0.612 5.612 16 C 0.572 3.428 17 O -0.531 6.531 18 C -0.131 4.131 19 C -0.034 4.034 20 C -0.134 4.134 21 C -0.067 4.067 22 C -0.151 4.151 23 C 0.565 3.435 24 N -0.851 5.851 25 O -0.534 6.534 26 C -0.044 4.044 27 C 0.120 3.880 28 H 0.043 0.957 29 H 0.070 0.930 30 H 0.054 0.946 31 H 0.022 0.978 32 H 0.024 0.976 33 H 0.385 0.615 34 H 0.254 0.746 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.077 0.923 39 H 0.142 0.858 40 H 0.137 0.863 41 H 0.129 0.871 42 H 0.400 0.600 43 H 0.406 0.594 44 H 0.159 0.841 45 H 0.092 0.908 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.521 -27.744 -11.781 30.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.080 4.080 3 C 0.041 3.959 4 N -0.376 5.376 5 C -0.370 4.370 6 H 0.088 0.912 7 C -0.210 4.210 8 N -0.580 5.580 9 Si 0.737 3.263 10 H -0.206 1.206 11 H -0.219 1.219 12 H -0.219 1.219 13 C -0.163 4.163 14 C -0.029 4.029 15 N -0.345 5.345 16 C 0.361 3.639 17 O -0.409 6.409 18 C -0.134 4.134 19 C -0.053 4.053 20 C -0.152 4.152 21 C -0.086 4.086 22 C -0.154 4.154 23 C 0.351 3.649 24 N -0.416 5.416 25 O -0.412 6.412 26 C -0.063 4.063 27 C -0.002 4.002 28 H 0.062 0.938 29 H 0.089 0.911 30 H 0.073 0.927 31 H 0.040 0.960 32 H 0.042 0.958 33 H 0.220 0.780 34 H 0.064 0.936 35 H 0.100 0.900 36 H 0.096 0.904 37 H 0.092 0.908 38 H 0.095 0.905 39 H 0.160 0.840 40 H 0.155 0.845 41 H 0.147 0.853 42 H 0.230 0.770 43 H 0.237 0.763 44 H 0.176 0.824 45 H 0.110 0.890 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.690 -26.861 -11.344 29.282 hybrid contribution 0.042 0.279 0.235 0.367 sum 2.732 -26.582 -11.108 28.939 Atomic orbital electron populations 1.21702 0.93423 1.00621 1.02887 1.21801 0.96652 0.96035 0.93544 1.20629 0.95673 0.87806 0.91801 1.42424 1.56910 1.10854 1.27427 1.19254 1.22860 0.87869 1.06989 0.91160 1.24741 1.00098 0.98301 0.97867 1.69673 1.36201 1.36144 1.16018 0.86130 0.77507 0.85060 0.77561 1.20602 1.21940 1.21924 1.22620 1.02194 0.93510 0.97980 1.22490 0.99910 0.98940 0.81591 1.48716 1.66113 1.08132 1.11509 1.17759 0.77760 0.83214 0.85138 1.90820 1.46324 1.85659 1.18102 1.19993 1.01543 0.94413 0.97416 1.21556 0.94687 0.91289 0.97792 1.21097 1.00244 0.97135 0.96741 1.21459 0.94231 0.98040 0.94851 1.19810 1.02552 0.94838 0.98232 1.18224 0.80459 0.82792 0.83415 1.43733 1.53505 1.10139 1.34201 1.90848 1.45530 1.43506 1.61267 1.22232 0.94439 0.97065 0.92583 1.22574 1.01924 0.77280 0.98391 0.93757 0.91079 0.92677 0.96032 0.95818 0.78016 0.93557 0.89990 0.90393 0.90796 0.90498 0.83994 0.84478 0.85277 0.77009 0.76264 0.82392 0.88990 0.90388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.14 8.31 37.16 0.31 -1.83 16 2 C -0.08 -1.27 0.64 -152.82 -0.10 -1.37 16 3 C 0.17 3.32 5.10 -4.05 -0.02 3.30 16 4 N -0.73 -18.32 5.15 -59.91 -0.31 -18.63 16 5 C -0.24 -6.68 9.99 -15.06 -0.15 -6.83 16 6 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 7 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 8 N -0.93 -28.56 13.06 55.49 0.72 -27.84 16 9 Si 0.91 22.69 29.55 -169.99 -5.02 17.66 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 12 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 13 C -0.12 -1.55 6.09 -25.36 -0.15 -1.70 16 14 C 0.09 1.11 4.99 -2.98 -0.01 1.10 16 15 N -0.61 -9.07 3.21 -171.09 -0.55 -9.62 16 16 C 0.57 8.95 7.75 -12.32 -0.10 8.85 16 17 O -0.53 -10.23 16.67 5.32 0.09 -10.14 16 18 C -0.13 -1.58 5.79 -105.02 -0.61 -2.18 16 19 C -0.03 -0.34 9.58 -39.10 -0.37 -0.71 16 20 C -0.13 -0.90 10.02 -39.70 -0.40 -1.30 16 21 C -0.07 -0.40 9.54 -39.10 -0.37 -0.77 16 22 C -0.15 -1.32 5.87 -105.02 -0.62 -1.94 16 23 C 0.57 5.07 8.05 -12.32 -0.10 4.97 16 24 N -0.85 -3.74 8.82 30.53 0.27 -3.47 16 25 O -0.53 -6.93 17.18 5.32 0.09 -6.84 16 26 C -0.04 -0.48 7.73 -38.78 -0.30 -0.78 16 27 C 0.12 2.04 5.68 -2.32 -0.01 2.03 16 28 H 0.04 0.69 8.08 -51.93 -0.42 0.27 16 29 H 0.07 1.39 6.69 -51.93 -0.35 1.04 16 30 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.02 0.43 8.10 -51.93 -0.42 0.01 16 32 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.39 10.22 6.21 -40.82 -0.25 9.97 16 34 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 35 H 0.08 0.94 7.85 -51.92 -0.41 0.54 16 36 H 0.08 0.87 7.86 -51.93 -0.41 0.46 16 37 H 0.07 0.81 7.12 -51.93 -0.37 0.44 16 38 H 0.08 0.83 6.42 -51.93 -0.33 0.49 16 39 H 0.14 1.41 7.74 -52.49 -0.41 1.00 16 40 H 0.14 0.53 8.06 -52.49 -0.42 0.11 16 41 H 0.13 0.27 6.39 -52.48 -0.34 -0.06 16 42 H 0.40 0.54 6.85 -40.82 -0.28 0.26 16 43 H 0.41 1.34 8.93 -40.82 -0.36 0.98 16 44 H 0.16 1.77 3.67 -52.48 -0.19 1.58 16 45 H 0.09 1.84 7.71 -51.93 -0.40 1.44 16 46 H 0.08 1.34 8.01 -51.93 -0.42 0.93 16 LS Contribution 373.69 15.07 5.63 5.63 Total: -1.00 -36.24 373.69 -8.35 -44.58 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: -6.17 Total: 8.34 kcal Atomic # 6 Polarization: 3.42 SS G_CDS: -3.10 Total: 0.32 kcal Atomic # 7 Polarization: -59.70 SS G_CDS: 0.14 Total: -59.56 kcal Atomic # 8 Polarization: -17.16 SS G_CDS: 0.18 Total: -16.98 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.02 Total: 17.66 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -36.24 -8.35 -44.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699843549.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.576 kcal (2) G-P(sol) polarization free energy of solvation -36.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds