Wall clock time and date at job start Tue Mar 31 2020 17:19:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 110.65473 * 2 1 4 4 N 1.46491 * 109.47366 * 56.80927 * 3 2 1 5 5 C 1.36938 * 120.00412 * 179.97438 * 4 3 2 6 6 H 1.08006 * 119.99607 * 0.02562 * 5 4 3 7 7 C 1.38811 * 120.00428 * 179.97438 * 5 4 3 8 8 N 1.31620 * 119.99686 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 119.99982 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47368 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47144 * 120.00604 * 9 7 5 12 12 H 1.48510 * 109.47018 * 240.00060 * 9 7 5 13 13 C 1.54620 * 110.73805 * 236.80945 * 2 1 3 14 14 C 1.54002 * 105.04162 * 263.32754 * 13 2 1 15 15 N 1.47481 * 107.08673 * 1.31058 * 14 13 2 16 16 C 1.34775 * 127.03750 * 154.51758 * 15 14 13 17 17 O 1.21550 * 120.00215 * 185.93200 * 16 15 14 18 18 C 1.47864 * 119.99567 * 5.93497 * 16 15 14 19 19 C 1.39710 * 120.06674 * 197.43864 * 18 16 15 20 20 C 1.38056 * 120.13982 * 180.29596 * 19 18 16 21 21 C 1.38098 * 120.29749 * 359.95591 * 20 19 18 22 22 C 1.39666 * 120.14813 * 0.04040 * 21 20 19 23 23 C 1.47855 * 120.07625 * 180.02562 * 22 21 20 24 24 N 1.34780 * 120.00228 * 359.97438 * 23 22 21 25 25 O 1.21555 * 120.00078 * 179.97438 * 23 22 21 26 26 C 1.39288 * 120.07522 * 17.70910 * 18 16 15 27 27 C 1.48117 * 105.93016 * 334.77502 * 15 14 13 28 28 H 1.09003 * 109.47386 * 183.19094 * 1 2 3 29 29 H 1.09005 * 109.47057 * 303.19076 * 1 2 3 30 30 H 1.09000 * 109.47488 * 63.19370 * 1 2 3 31 31 H 1.08997 * 109.47130 * 176.81277 * 3 2 1 32 32 H 1.09003 * 109.47116 * 296.80878 * 3 2 1 33 33 H 0.97001 * 120.00076 * 359.97438 * 4 3 2 34 34 H 0.97002 * 119.99648 * 179.97438 * 8 7 5 35 35 H 1.09007 * 110.32554 * 144.43590 * 13 2 1 36 36 H 1.09004 * 110.41344 * 22.26541 * 13 2 1 37 37 H 1.08997 * 109.91460 * 241.94117 * 14 13 2 38 38 H 1.09006 * 110.06958 * 120.75715 * 14 13 2 39 39 H 1.07996 * 119.92730 * 0.24798 * 19 18 16 40 40 H 1.07999 * 119.84868 * 179.97438 * 20 19 18 41 41 H 1.08005 * 119.92867 * 180.02562 * 21 20 19 42 42 H 0.97000 * 119.99489 * 359.97438 * 24 23 22 43 43 H 0.96997 * 120.00607 * 180.02562 * 24 23 22 44 44 H 1.08004 * 120.15134 * 359.75123 * 26 18 16 45 45 H 1.08999 * 110.66177 * 157.51232 * 27 15 14 46 46 H 1.09000 * 110.66873 * 280.62828 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0697 1.4317 0.0000 4 7 1.5345 2.1553 1.1558 5 6 1.8816 3.4633 1.3655 6 1 2.5497 3.9615 0.6785 7 6 1.3740 4.1492 2.4604 8 7 0.5595 3.5422 3.2973 9 14 1.8471 5.9336 2.7460 10 1 2.7687 6.3796 1.6705 11 1 0.6253 6.7776 2.7334 12 1 2.5237 6.0618 4.0617 13 6 2.0775 -0.7916 -1.2101 14 6 2.3806 -2.1989 -0.6631 15 7 1.9938 -2.2032 0.7601 16 6 1.6326 -3.2702 1.5000 17 8 1.2335 -3.1141 2.6374 18 6 1.7220 -4.6308 0.9280 19 6 1.0277 -5.6872 1.5228 20 6 1.1149 -6.9593 0.9935 21 6 1.8872 -7.1965 -0.1265 22 6 2.5864 -6.1494 -0.7310 23 6 3.4123 -6.4050 -1.9304 24 7 3.4916 -7.6496 -2.4414 25 8 4.0199 -5.4926 -2.4557 26 6 2.5031 -4.8631 -0.2017 27 6 2.0772 -0.7939 1.2083 28 1 -0.3634 -1.0261 0.0572 29 1 -0.3633 0.5626 0.8600 30 1 -0.3634 0.4634 -0.9172 31 1 3.1579 1.4097 0.0571 32 1 1.7641 1.9352 -0.9172 33 1 0.9342 1.7080 1.7726 34 1 0.2051 4.0214 4.0627 35 1 2.9892 -0.3267 -1.5855 36 1 1.3280 -0.8456 -1.9997 37 1 3.4450 -2.4133 -0.7592 38 1 1.8013 -2.9447 -1.2075 39 1 0.4220 -5.5084 2.3989 40 1 0.5765 -7.7725 1.4574 41 1 1.9509 -8.1939 -0.5358 42 1 3.0070 -8.3778 -2.0219 43 1 4.0337 -7.8175 -3.2280 44 1 3.0421 -4.0500 -0.6651 45 1 1.4539 -0.6325 2.0878 46 1 3.1112 -0.5157 1.4122 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699843549.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:19:02 Heat of formation + Delta-G solvation = -47.480323 kcal Electronic energy + Delta-G solvation = -28239.815608 eV Core-core repulsion = 24321.759024 eV Total energy + Delta-G solvation = -3918.056584 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.86525 -40.82432 -39.60010 -38.61182 -36.58645 -34.95356 -34.47316 -32.58347 -32.12198 -31.85460 -30.51140 -28.03261 -27.35667 -25.65475 -25.15129 -24.25792 -23.20314 -22.11945 -20.67680 -20.21625 -19.32850 -18.73853 -18.29991 -17.39438 -17.29913 -17.03545 -16.84463 -16.51393 -15.87402 -15.74395 -15.63564 -15.36191 -15.18800 -15.14245 -14.77561 -14.74274 -14.54373 -13.97194 -13.62609 -13.53750 -13.48824 -13.03406 -12.96829 -12.91211 -12.81782 -12.67802 -12.36975 -12.11020 -12.02678 -11.70175 -11.50992 -11.40947 -11.29480 -11.08108 -10.94376 -10.71732 -10.18421 -10.09460 -9.78954 -8.97807 -7.93641 -5.22282 -0.40734 -0.05332 1.46748 1.47928 1.48479 1.58020 1.78448 1.99223 2.47390 2.56448 2.80008 3.21767 3.40125 3.52550 3.57981 3.75824 3.82152 3.84785 4.01824 4.10267 4.15260 4.17896 4.28483 4.30748 4.35120 4.55324 4.56703 4.66113 4.73698 4.77082 4.84668 4.94221 4.98376 5.03014 5.08499 5.09615 5.19079 5.23066 5.29695 5.33493 5.43543 5.51577 5.67967 5.88906 6.28163 6.40573 6.42138 6.94386 7.29030 7.34479 8.11297 8.33368 9.30377 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.022532 B = 0.002535 C = 0.002357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.354206 B =11043.782502 C =11877.526928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.072 4.072 3 C 0.168 3.832 4 N -0.744 5.744 5 C -0.239 4.239 6 H 0.079 0.921 7 C -0.080 4.080 8 N -0.973 5.973 9 Si 0.974 3.026 10 H -0.263 1.263 11 H -0.294 1.294 12 H -0.296 1.296 13 C -0.115 4.115 14 C 0.096 3.904 15 N -0.611 5.611 16 C 0.564 3.436 17 O -0.584 6.584 18 C -0.153 4.153 19 C -0.047 4.047 20 C -0.122 4.122 21 C -0.042 4.042 22 C -0.158 4.158 23 C 0.563 3.437 24 N -0.826 5.826 25 O -0.583 6.583 26 C -0.053 4.053 27 C 0.123 3.877 28 H 0.051 0.949 29 H 0.032 0.968 30 H 0.069 0.931 31 H 0.028 0.972 32 H 0.033 0.967 33 H 0.373 0.627 34 H 0.249 0.751 35 H 0.098 0.902 36 H 0.099 0.901 37 H 0.088 0.912 38 H 0.094 0.906 39 H 0.132 0.868 40 H 0.175 0.825 41 H 0.180 0.820 42 H 0.418 0.582 43 H 0.415 0.585 44 H 0.150 0.850 45 H 0.050 0.950 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.274 -30.822 -14.597 34.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.073 4.073 3 C 0.041 3.959 4 N -0.388 5.388 5 C -0.370 4.370 6 H 0.097 0.903 7 C -0.272 4.272 8 N -0.624 5.624 9 Si 0.803 3.197 10 H -0.187 1.187 11 H -0.222 1.222 12 H -0.224 1.224 13 C -0.153 4.153 14 C -0.025 4.025 15 N -0.343 5.343 16 C 0.356 3.644 17 O -0.466 6.466 18 C -0.156 4.156 19 C -0.066 4.066 20 C -0.139 4.139 21 C -0.061 4.061 22 C -0.161 4.161 23 C 0.349 3.651 24 N -0.391 5.391 25 O -0.464 6.464 26 C -0.072 4.072 27 C 0.000 4.000 28 H 0.070 0.930 29 H 0.051 0.949 30 H 0.088 0.912 31 H 0.046 0.954 32 H 0.051 0.949 33 H 0.206 0.794 34 H 0.058 0.942 35 H 0.116 0.884 36 H 0.118 0.882 37 H 0.106 0.894 38 H 0.112 0.888 39 H 0.150 0.850 40 H 0.193 0.807 41 H 0.197 0.803 42 H 0.251 0.749 43 H 0.247 0.753 44 H 0.167 0.833 45 H 0.069 0.931 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.470 -30.005 -14.243 33.395 hybrid contribution -0.172 1.057 1.057 1.505 sum 3.297 -28.948 -13.186 31.980 Atomic orbital electron populations 1.21599 0.93842 1.00539 1.01784 1.21661 0.96167 0.94372 0.95094 1.20805 0.95779 0.89325 0.89987 1.42659 1.56841 1.10486 1.28780 1.19697 1.21772 0.89024 1.06551 0.90283 1.25595 1.00859 1.02609 0.98154 1.69852 1.38074 1.37753 1.16705 0.85056 0.77146 0.80035 0.77429 1.18722 1.22156 1.22385 1.22632 1.03342 0.92795 0.96507 1.22669 1.01067 0.99133 0.79662 1.48763 1.65806 1.06938 1.12779 1.18498 0.76577 0.84720 0.84613 1.90775 1.48850 1.86600 1.20345 1.19708 1.04266 0.92614 0.98986 1.21685 0.94676 0.92402 0.97809 1.21492 0.99643 0.96354 0.96422 1.21975 0.91376 0.99335 0.93382 1.19916 1.03032 0.94688 0.98443 1.18284 0.80028 0.83494 0.83265 1.43535 1.52618 1.09092 1.33850 1.90830 1.47616 1.45258 1.62658 1.22124 0.94466 0.98246 0.92326 1.22318 1.00630 0.79476 0.97583 0.92961 0.94923 0.91188 0.95425 0.94881 0.79400 0.94183 0.88370 0.88228 0.89450 0.88780 0.85030 0.80741 0.80325 0.74881 0.75279 0.83280 0.93113 0.91014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.11 8.31 71.98 0.60 -3.51 16 2 C -0.07 -2.34 0.64 -51.09 -0.03 -2.37 16 3 C 0.17 6.62 5.10 86.38 0.44 7.06 16 4 N -0.74 -38.58 5.15 -343.46 -1.77 -40.34 16 5 C -0.24 -13.56 9.99 84.03 0.84 -12.72 16 6 H 0.08 4.27 7.83 -2.91 -0.02 4.25 16 7 C -0.08 -4.76 5.50 84.86 0.47 -4.29 16 8 N -0.97 -62.05 13.06 21.65 0.28 -61.76 16 9 Si 0.97 47.52 29.55 68.60 2.03 49.55 16 10 H -0.26 -11.91 7.11 99.48 0.71 -11.21 16 11 H -0.29 -14.34 7.11 99.48 0.71 -13.63 16 12 H -0.30 -14.55 7.11 99.48 0.71 -13.84 16 13 C -0.11 -2.65 6.09 31.48 0.19 -2.45 16 14 C 0.10 2.21 4.99 86.53 0.43 2.64 16 15 N -0.61 -18.90 3.21 -813.48 -2.61 -21.51 16 16 C 0.56 18.75 7.75 86.79 0.67 19.43 16 17 O -0.58 -24.51 16.67 -3.87 -0.06 -24.57 16 18 C -0.15 -3.71 5.79 -20.12 -0.12 -3.83 16 19 C -0.05 -0.88 9.58 22.58 0.22 -0.67 16 20 C -0.12 -1.17 10.02 22.19 0.22 -0.95 16 21 C -0.04 -0.31 9.54 22.58 0.22 -0.09 16 22 C -0.16 -2.30 5.87 -20.12 -0.12 -2.42 16 23 C 0.56 8.50 8.05 86.79 0.70 9.20 16 24 N -0.83 -3.89 8.82 -175.59 -1.55 -5.44 16 25 O -0.58 -14.24 17.18 -3.89 -0.07 -14.30 16 26 C -0.05 -1.08 7.73 22.79 0.18 -0.91 16 27 C 0.12 4.47 5.68 86.61 0.49 4.96 16 28 H 0.05 1.67 8.08 -2.39 -0.02 1.65 16 29 H 0.03 1.35 6.69 -2.38 -0.02 1.34 16 30 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 31 H 0.03 1.08 8.10 -2.39 -0.02 1.06 16 32 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.37 21.04 6.21 -92.71 -0.58 20.46 16 34 H 0.25 15.43 8.31 -92.71 -0.77 14.66 16 35 H 0.10 2.00 7.85 -2.38 -0.02 1.99 16 36 H 0.10 1.93 7.86 -2.38 -0.02 1.91 16 37 H 0.09 1.81 7.12 -2.39 -0.02 1.80 16 38 H 0.09 1.88 6.42 -2.38 -0.02 1.87 16 39 H 0.13 2.71 7.74 -2.91 -0.02 2.68 16 40 H 0.18 0.42 8.06 -2.91 -0.02 0.39 16 41 H 0.18 -0.51 6.39 -2.91 -0.02 -0.53 16 42 H 0.42 -1.15 6.85 -92.71 -0.64 -1.79 16 43 H 0.41 1.23 8.93 -92.71 -0.83 0.40 16 44 H 0.15 3.25 3.67 -2.91 -0.01 3.24 16 45 H 0.05 2.25 7.71 -2.39 -0.02 2.23 16 46 H 0.07 2.64 8.01 -2.39 -0.02 2.62 16 Total: -1.00 -85.04 373.69 0.66 -84.38 By element: Atomic # 1 Polarization: 25.91 SS G_CDS: -0.99 Total: 24.93 kcal Atomic # 6 Polarization: 3.68 SS G_CDS: 5.39 Total: 9.08 kcal Atomic # 7 Polarization: -123.42 SS G_CDS: -5.64 Total: -129.06 kcal Atomic # 8 Polarization: -38.74 SS G_CDS: -0.13 Total: -38.87 kcal Atomic # 14 Polarization: 47.52 SS G_CDS: 2.03 Total: 49.55 kcal Total: -85.04 0.66 -84.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699843549.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.901 kcal (2) G-P(sol) polarization free energy of solvation -85.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds