Wall clock time and date at job start Tue Mar 31 2020 17:36:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.46078 * 2 1 4 4 N 1.46500 * 109.46926 * 60.02959 * 3 2 1 5 5 C 1.34773 * 119.99940 * 179.97438 * 4 3 2 6 6 O 1.21727 * 119.99859 * 0.02562 * 5 4 3 7 7 C 1.46490 * 120.00265 * 180.27218 * 5 4 3 8 8 C 1.37777 * 125.86245 * 179.74716 * 7 5 4 9 9 C 1.39934 * 107.69079 * 179.97438 * 8 7 5 10 10 O 1.35112 * 145.14451 * 179.97438 * 9 8 7 11 11 C 1.34381 * 109.62728 * 179.97438 * 10 9 8 12 12 C 1.34456 * 109.44728 * 0.04568 * 11 10 9 13 13 C 1.39144 * 107.40054 * 359.97438 * 9 8 7 14 14 N 1.37102 * 108.11098 * 359.77535 * 13 9 8 15 15 H 0.97000 * 125.74818 * 180.26047 * 14 13 9 16 16 C 1.53041 * 109.45199 * 119.96934 * 2 1 3 17 17 C 1.53192 * 109.31076 * 58.64576 * 16 2 1 18 18 N 1.46926 * 108.77563 * 54.63853 * 17 16 2 19 19 C 1.36932 * 120.62923 * 126.41067 * 18 17 16 20 20 H 1.08004 * 120.00352 * 207.66442 * 19 18 17 21 21 C 1.38811 * 120.00153 * 27.66462 * 19 18 17 22 22 N 1.31622 * 120.00382 * 17.36332 * 21 19 18 23 23 Si 1.86807 * 120.00179 * 197.36673 * 21 19 18 24 24 H 1.48498 * 109.47012 * 59.99747 * 23 21 19 25 25 H 1.48499 * 109.47034 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.46969 * 299.99945 * 23 21 19 27 27 C 1.46921 * 118.73779 * 306.39059 * 18 17 16 28 28 C 1.53047 * 109.45808 * 240.03058 * 2 1 3 29 29 H 1.09000 * 109.47204 * 59.99737 * 1 2 3 30 30 H 1.08998 * 109.46991 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47086 * 299.99972 * 1 2 3 32 32 H 1.08996 * 109.47170 * 300.02801 * 3 2 1 33 33 H 1.09000 * 109.47034 * 180.02562 * 3 2 1 34 34 H 0.96998 * 119.99781 * 359.97438 * 4 3 2 35 35 H 1.07998 * 126.15438 * 359.97438 * 8 7 5 36 36 H 1.08006 * 125.27560 * 180.02562 * 11 10 9 37 37 H 1.08003 * 126.41495 * 179.97438 * 12 11 10 38 38 H 1.08996 * 109.49734 * 178.59837 * 16 2 1 39 39 H 1.08998 * 109.49571 * 298.69370 * 16 2 1 40 40 H 1.08995 * 109.58596 * 294.84889 * 17 16 2 41 41 H 1.09001 * 109.58080 * 174.42695 * 17 16 2 42 42 H 0.96990 * 120.00386 * 180.02562 * 22 21 19 43 43 H 1.09004 * 109.58256 * 293.82091 * 27 18 17 44 44 H 1.09000 * 109.70105 * 173.46988 * 27 18 17 45 45 H 1.08999 * 109.49990 * 61.30870 * 28 2 1 46 46 H 1.09000 * 109.49675 * 181.40869 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0397 1.4426 0.0000 4 7 1.5518 2.1329 1.1965 5 6 1.8777 3.4231 1.4102 6 8 2.5770 4.0149 0.6087 7 6 1.3948 4.1116 2.6096 8 6 1.6570 5.4208 2.9494 9 6 1.0117 5.6825 4.1632 10 8 0.7686 6.6139 5.1114 11 6 -0.0073 6.0866 6.0736 12 6 -0.2838 4.8054 5.7737 13 6 0.3588 4.5154 4.5475 14 7 0.5927 3.5615 3.5909 15 1 0.2539 2.6527 3.6021 16 6 2.0396 -0.7209 1.2501 17 6 1.4990 -2.1542 1.2642 18 7 1.8620 -2.8089 0.0000 19 6 2.5253 -4.0069 0.0001 20 1 3.1670 -4.2689 -0.8281 21 6 2.3729 -4.8845 1.0647 22 7 1.3597 -4.7448 1.8931 23 14 3.6060 -6.2640 1.3218 24 1 4.9594 -5.6870 1.5233 25 1 3.2214 -7.0552 2.5182 26 1 3.6171 -7.1469 0.1278 27 6 1.4993 -2.1541 -1.2642 28 6 2.0398 -0.7209 -1.2501 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.6759 1.9565 -0.8897 33 1 3.1297 1.4428 -0.0005 34 1 0.9942 1.6613 1.8350 35 1 2.2533 6.1194 2.3812 36 1 -0.3546 6.6107 6.9518 37 1 -0.8844 4.1251 6.3594 38 1 3.1293 -0.7431 1.2384 39 1 1.6956 -0.1935 2.1398 40 1 0.4141 -2.1345 1.3672 41 1 1.9375 -2.7018 2.0985 42 1 1.2535 -5.3578 2.6372 43 1 0.4143 -2.1345 -1.3674 44 1 1.9359 -2.7012 -2.0999 45 1 1.6959 -0.1935 -2.1399 46 1 3.1295 -0.7432 -1.2382 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716885017.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:42 Heat of formation + Delta-G solvation = 43.943835 kcal Electronic energy + Delta-G solvation = -28297.121946 eV Core-core repulsion = 24383.029811 eV Total energy + Delta-G solvation = -3914.092135 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.16993 -40.43204 -39.19944 -38.21463 -35.20028 -33.29597 -32.62024 -31.12372 -30.73782 -30.00936 -28.82735 -27.17915 -26.72940 -24.40301 -23.25941 -22.34087 -21.88005 -20.99266 -20.78170 -20.20156 -18.71301 -18.06688 -17.38759 -16.54147 -16.50146 -16.17298 -15.58283 -15.40494 -14.95044 -14.65087 -14.22753 -14.05354 -13.84064 -13.76040 -13.65867 -13.53555 -13.27193 -13.07124 -12.87344 -12.69070 -12.07799 -12.00855 -11.54646 -11.38553 -11.24587 -10.82999 -10.74771 -10.62820 -10.35060 -10.34669 -10.27023 -10.21684 -9.86472 -9.60063 -9.49528 -9.15920 -8.86982 -8.49115 -8.12490 -6.70903 -5.83879 -3.25156 0.75123 1.98935 2.23299 2.41758 2.62188 3.13654 3.17678 3.35274 3.41074 3.42788 4.29813 4.45890 4.48674 4.71261 4.94776 5.01447 5.08087 5.13438 5.23064 5.25046 5.35518 5.45424 5.52047 5.67914 5.76403 5.82447 5.86407 5.98464 6.01695 6.05169 6.06505 6.21703 6.26092 6.35562 6.39744 6.45562 6.52859 6.61967 6.70852 6.79958 6.87840 6.93871 7.01267 7.28660 7.35391 7.59276 7.75321 7.99111 8.40400 9.17064 9.80636 10.36865 11.24635 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.017176 B = 0.002555 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.784725 B =10956.990463 C =11934.189555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.065 4.065 3 C 0.130 3.870 4 N -0.718 5.718 5 C 0.586 3.414 6 O -0.525 6.525 7 C 0.009 3.991 8 C -0.081 4.081 9 C -0.041 4.041 10 O -0.169 6.169 11 C 0.010 3.990 12 C -0.202 4.202 13 C 0.012 3.988 14 N -0.531 5.531 15 H 0.421 0.579 16 C -0.130 4.130 17 C 0.171 3.829 18 N -0.591 5.591 19 C -0.252 4.252 20 H 0.065 0.935 21 C 0.002 3.998 22 N -0.904 5.904 23 Si 0.901 3.099 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.283 1.283 27 C 0.146 3.854 28 C -0.120 4.120 29 H 0.049 0.951 30 H 0.075 0.925 31 H 0.040 0.960 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.396 0.604 35 H 0.161 0.839 36 H 0.212 0.788 37 H 0.154 0.846 38 H 0.058 0.942 39 H 0.041 0.959 40 H 0.020 0.980 41 H 0.086 0.914 42 H 0.254 0.746 43 H 0.021 0.979 44 H 0.053 0.947 45 H 0.053 0.947 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.836 18.969 5.775 20.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.065 4.065 3 C 0.007 3.993 4 N -0.369 5.369 5 C 0.372 3.628 6 O -0.402 6.402 7 C -0.103 4.103 8 C -0.108 4.108 9 C -0.093 4.093 10 O -0.066 6.066 11 C -0.057 4.057 12 C -0.223 4.223 13 C -0.102 4.102 14 N -0.135 5.135 15 H 0.260 0.740 16 C -0.169 4.169 17 C 0.046 3.954 18 N -0.313 5.313 19 C -0.381 4.381 20 H 0.083 0.917 21 C -0.196 4.196 22 N -0.549 5.549 23 Si 0.731 3.269 24 H -0.211 1.211 25 H -0.217 1.217 26 H -0.209 1.209 27 C 0.019 3.981 28 C -0.160 4.160 29 H 0.068 0.932 30 H 0.094 0.906 31 H 0.060 0.940 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.232 0.768 35 H 0.178 0.822 36 H 0.229 0.771 37 H 0.172 0.828 38 H 0.076 0.924 39 H 0.060 0.940 40 H 0.038 0.962 41 H 0.104 0.896 42 H 0.064 0.936 43 H 0.038 0.962 44 H 0.072 0.928 45 H 0.072 0.928 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.289 19.383 5.253 20.535 hybrid contribution -0.027 -1.590 0.796 1.778 sum -4.316 17.793 6.049 19.282 Atomic orbital electron populations 1.21944 0.94713 1.03106 1.00159 1.20717 0.95745 0.91938 0.98119 1.21633 0.99332 0.92259 0.86094 1.45979 1.53321 1.11242 1.26357 1.16826 0.80500 0.81631 0.83824 1.90875 1.37747 1.66158 1.45398 1.20343 1.03035 0.93738 0.93204 1.19884 1.03684 0.94180 0.93075 1.19281 1.07255 0.87353 0.95383 1.84024 1.57643 1.36956 1.28024 1.24055 0.95053 0.93185 0.93444 1.20592 1.08036 0.97555 0.96136 1.19037 1.05638 0.90361 0.95126 1.41188 1.42290 1.12629 1.17404 0.74036 1.22262 1.00833 0.99626 0.94202 1.20787 0.96440 0.87731 0.90482 1.44012 1.66813 1.21094 0.99427 1.19150 1.19327 0.93479 1.06174 0.91745 1.25012 0.97121 0.97547 0.99952 1.70012 1.27927 1.38944 1.17979 0.86384 0.81311 0.81824 0.77355 1.21050 1.21665 1.20876 1.20912 0.96414 0.90600 0.90150 1.22000 1.00870 0.98173 0.94925 0.93213 0.90580 0.94048 0.91411 0.91191 0.76832 0.82176 0.77140 0.82792 0.92364 0.94045 0.96151 0.89616 0.93637 0.96159 0.92827 0.92797 0.91991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 7.54 37.16 0.28 -1.67 16 2 C -0.06 -0.94 0.53 -154.46 -0.08 -1.03 16 3 C 0.13 1.74 4.56 -4.04 -0.02 1.72 16 4 N -0.72 -8.66 4.94 -61.68 -0.30 -8.97 16 5 C 0.59 7.90 7.78 -12.94 -0.10 7.80 16 6 O -0.53 -8.73 16.87 5.16 0.09 -8.65 16 7 C 0.01 0.11 7.03 -81.86 -0.58 -0.46 16 8 C -0.08 -0.98 10.58 -39.12 -0.41 -1.40 16 9 C -0.04 -0.49 8.20 -38.61 -0.32 -0.81 16 10 O -0.17 -1.81 10.68 3.22 0.03 -1.77 16 11 C 0.01 0.08 12.02 29.40 0.35 0.43 16 12 C -0.20 -1.66 10.89 -39.70 -0.43 -2.09 16 13 C 0.01 0.13 8.11 -83.95 -0.68 -0.55 16 14 N -0.53 -5.34 6.08 -7.04 -0.04 -5.38 16 15 H 0.42 3.19 8.16 -40.82 -0.33 2.86 16 16 C -0.13 -2.21 4.75 -26.61 -0.13 -2.34 16 17 C 0.17 3.76 4.84 -3.71 -0.02 3.74 16 18 N -0.59 -13.96 2.99 -172.33 -0.52 -14.48 16 19 C -0.25 -6.69 9.59 -15.06 -0.14 -6.83 16 20 H 0.06 1.69 7.89 -52.48 -0.41 1.28 16 21 C 0.00 0.06 4.91 -17.43 -0.09 -0.03 16 22 N -0.90 -25.38 11.19 55.49 0.62 -24.76 16 23 Si 0.90 21.29 29.59 -169.99 -5.03 16.26 16 24 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 25 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 26 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 27 C 0.15 2.85 6.04 -3.72 -0.02 2.83 16 28 C -0.12 -1.91 4.91 -26.61 -0.13 -2.04 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.08 1.24 4.98 -51.93 -0.26 0.98 16 31 H 0.04 0.49 6.86 -51.93 -0.36 0.13 16 32 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.40 4.10 5.25 -40.82 -0.21 3.89 16 35 H 0.16 1.78 8.06 -52.49 -0.42 1.36 16 36 H 0.21 0.54 8.06 -52.48 -0.42 0.11 16 37 H 0.15 0.88 8.06 -52.48 -0.42 0.46 16 38 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.04 0.61 6.82 -51.93 -0.35 0.25 16 40 H 0.02 0.46 6.69 -51.93 -0.35 0.12 16 41 H 0.09 2.17 6.04 -51.93 -0.31 1.86 16 42 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 43 H 0.02 0.40 6.69 -51.93 -0.35 0.05 16 44 H 0.05 1.05 7.94 -51.93 -0.41 0.64 16 45 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 LS Contribution 364.57 15.07 5.49 5.49 Total: -1.00 -32.09 364.57 -8.46 -40.55 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -6.29 Total: 4.43 kcal Atomic # 6 Polarization: -0.22 SS G_CDS: -2.51 Total: -2.74 kcal Atomic # 7 Polarization: -53.34 SS G_CDS: -0.24 Total: -53.58 kcal Atomic # 8 Polarization: -10.54 SS G_CDS: 0.12 Total: -10.42 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.03 Total: 16.26 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.09 -8.46 -40.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716885017.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.495 kcal (2) G-P(sol) polarization free energy of solvation -32.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.551 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds