Wall clock time and date at job start Tue Mar 31 2020 17:36:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.46078 * 2 1 4 4 N 1.46500 * 109.46926 * 60.02959 * 3 2 1 5 5 C 1.34773 * 119.99940 * 179.97438 * 4 3 2 6 6 O 1.21727 * 119.99859 * 0.02562 * 5 4 3 7 7 C 1.46490 * 120.00265 * 180.27218 * 5 4 3 8 8 C 1.37777 * 125.86245 * 179.74716 * 7 5 4 9 9 C 1.39934 * 107.69079 * 179.97438 * 8 7 5 10 10 O 1.35112 * 145.14451 * 179.97438 * 9 8 7 11 11 C 1.34381 * 109.62728 * 179.97438 * 10 9 8 12 12 C 1.34456 * 109.44728 * 0.04568 * 11 10 9 13 13 C 1.39144 * 107.40054 * 359.97438 * 9 8 7 14 14 N 1.37102 * 108.11098 * 359.77535 * 13 9 8 15 15 H 0.97000 * 125.74818 * 180.26047 * 14 13 9 16 16 C 1.53041 * 109.45199 * 119.96934 * 2 1 3 17 17 C 1.53192 * 109.31076 * 58.64576 * 16 2 1 18 18 N 1.46926 * 108.77563 * 54.63853 * 17 16 2 19 19 C 1.36932 * 120.62923 * 126.41067 * 18 17 16 20 20 H 1.08004 * 120.00352 * 207.66442 * 19 18 17 21 21 C 1.38811 * 120.00153 * 27.66462 * 19 18 17 22 22 N 1.31622 * 120.00382 * 17.36332 * 21 19 18 23 23 Si 1.86807 * 120.00179 * 197.36673 * 21 19 18 24 24 H 1.48498 * 109.47012 * 59.99747 * 23 21 19 25 25 H 1.48499 * 109.47034 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.46969 * 299.99945 * 23 21 19 27 27 C 1.46921 * 118.73779 * 306.39059 * 18 17 16 28 28 C 1.53047 * 109.45808 * 240.03058 * 2 1 3 29 29 H 1.09000 * 109.47204 * 59.99737 * 1 2 3 30 30 H 1.08998 * 109.46991 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47086 * 299.99972 * 1 2 3 32 32 H 1.08996 * 109.47170 * 300.02801 * 3 2 1 33 33 H 1.09000 * 109.47034 * 180.02562 * 3 2 1 34 34 H 0.96998 * 119.99781 * 359.97438 * 4 3 2 35 35 H 1.07998 * 126.15438 * 359.97438 * 8 7 5 36 36 H 1.08006 * 125.27560 * 180.02562 * 11 10 9 37 37 H 1.08003 * 126.41495 * 179.97438 * 12 11 10 38 38 H 1.08996 * 109.49734 * 178.59837 * 16 2 1 39 39 H 1.08998 * 109.49571 * 298.69370 * 16 2 1 40 40 H 1.08995 * 109.58596 * 294.84889 * 17 16 2 41 41 H 1.09001 * 109.58080 * 174.42695 * 17 16 2 42 42 H 0.96990 * 120.00386 * 180.02562 * 22 21 19 43 43 H 1.09004 * 109.58256 * 293.82091 * 27 18 17 44 44 H 1.09000 * 109.70105 * 173.46988 * 27 18 17 45 45 H 1.08999 * 109.49990 * 61.30870 * 28 2 1 46 46 H 1.09000 * 109.49675 * 181.40869 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0397 1.4426 0.0000 4 7 1.5518 2.1329 1.1965 5 6 1.8777 3.4231 1.4102 6 8 2.5770 4.0149 0.6087 7 6 1.3948 4.1116 2.6096 8 6 1.6570 5.4208 2.9494 9 6 1.0117 5.6825 4.1632 10 8 0.7686 6.6139 5.1114 11 6 -0.0073 6.0866 6.0736 12 6 -0.2838 4.8054 5.7737 13 6 0.3588 4.5154 4.5475 14 7 0.5927 3.5615 3.5909 15 1 0.2539 2.6527 3.6021 16 6 2.0396 -0.7209 1.2501 17 6 1.4990 -2.1542 1.2642 18 7 1.8620 -2.8089 0.0000 19 6 2.5253 -4.0069 0.0001 20 1 3.1670 -4.2689 -0.8281 21 6 2.3729 -4.8845 1.0647 22 7 1.3597 -4.7448 1.8931 23 14 3.6060 -6.2640 1.3218 24 1 4.9594 -5.6870 1.5233 25 1 3.2214 -7.0552 2.5182 26 1 3.6171 -7.1469 0.1278 27 6 1.4993 -2.1541 -1.2642 28 6 2.0398 -0.7209 -1.2501 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.6759 1.9565 -0.8897 33 1 3.1297 1.4428 -0.0005 34 1 0.9942 1.6613 1.8350 35 1 2.2533 6.1194 2.3812 36 1 -0.3546 6.6107 6.9518 37 1 -0.8844 4.1251 6.3594 38 1 3.1293 -0.7431 1.2384 39 1 1.6956 -0.1935 2.1398 40 1 0.4141 -2.1345 1.3672 41 1 1.9375 -2.7018 2.0985 42 1 1.2535 -5.3578 2.6372 43 1 0.4143 -2.1345 -1.3674 44 1 1.9359 -2.7012 -2.0999 45 1 1.6959 -0.1935 -2.1399 46 1 3.1295 -0.7432 -1.2382 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716885017.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:41 Heat of formation + Delta-G solvation = 23.214608 kcal Electronic energy + Delta-G solvation = -28298.020832 eV Core-core repulsion = 24383.029811 eV Total energy + Delta-G solvation = -3914.991022 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.91524 -41.43153 -40.32978 -39.36554 -36.66830 -34.78075 -33.33083 -32.75998 -31.65207 -31.58763 -29.77030 -28.61218 -27.85709 -25.95612 -24.41961 -23.79685 -22.67438 -22.35847 -21.71985 -21.19124 -19.71535 -19.44175 -18.34645 -18.04813 -17.29148 -17.21182 -16.81888 -16.50590 -16.45875 -15.86093 -15.52486 -15.36510 -15.11517 -15.04987 -14.76230 -14.53794 -14.45515 -14.29089 -14.06462 -13.66685 -13.44042 -13.17633 -12.95371 -12.78203 -12.69793 -12.55288 -12.38630 -12.25020 -11.92494 -11.81215 -11.50051 -11.44368 -11.09068 -11.07927 -11.05884 -10.48903 -10.23472 -9.66663 -8.89560 -8.63212 -7.86862 -5.29823 -0.07420 1.19713 1.45794 1.47774 1.48598 1.54111 1.68483 1.76967 2.19447 2.27653 2.51265 3.27012 3.59992 3.68303 3.71564 3.80794 3.84912 3.93124 3.96174 4.30454 4.39390 4.47705 4.51902 4.60125 4.66783 4.72376 4.76151 4.78075 4.81829 4.84337 4.94480 5.03222 5.07964 5.10925 5.20256 5.30156 5.32583 5.40386 5.43121 5.48550 5.53483 5.56634 5.67067 5.84737 6.13542 6.25920 6.40593 6.41999 6.97682 7.17575 7.90387 8.40099 9.18632 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.017176 B = 0.002555 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.784725 B =10956.990463 C =11934.189555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.054 4.054 3 C 0.140 3.860 4 N -0.708 5.708 5 C 0.592 3.408 6 O -0.562 6.562 7 C -0.006 4.006 8 C -0.090 4.090 9 C -0.075 4.075 10 O -0.185 6.185 11 C 0.029 3.971 12 C -0.217 4.217 13 C 0.012 3.988 14 N -0.521 5.521 15 H 0.432 0.568 16 C -0.118 4.118 17 C 0.179 3.821 18 N -0.610 5.610 19 C -0.261 4.261 20 H 0.062 0.938 21 C -0.049 4.049 22 N -0.931 5.931 23 Si 0.961 3.039 24 H -0.282 1.282 25 H -0.294 1.294 26 H -0.277 1.277 27 C 0.142 3.858 28 C -0.112 4.112 29 H 0.067 0.933 30 H 0.048 0.952 31 H 0.061 0.939 32 H 0.077 0.923 33 H 0.060 0.940 34 H 0.406 0.594 35 H 0.160 0.840 36 H 0.259 0.741 37 H 0.181 0.819 38 H 0.043 0.957 39 H 0.067 0.933 40 H 0.008 0.992 41 H 0.047 0.953 42 H 0.249 0.751 43 H 0.023 0.977 44 H 0.048 0.952 45 H 0.084 0.916 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.641 20.458 6.624 22.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.055 4.055 3 C 0.017 3.983 4 N -0.360 5.360 5 C 0.379 3.621 6 O -0.441 6.441 7 C -0.118 4.118 8 C -0.118 4.118 9 C -0.127 4.127 10 O -0.084 6.084 11 C -0.038 4.038 12 C -0.238 4.238 13 C -0.103 4.103 14 N -0.126 5.126 15 H 0.273 0.727 16 C -0.157 4.157 17 C 0.054 3.946 18 N -0.333 5.333 19 C -0.392 4.392 20 H 0.080 0.920 21 C -0.244 4.244 22 N -0.578 5.578 23 Si 0.789 3.211 24 H -0.208 1.208 25 H -0.220 1.220 26 H -0.203 1.203 27 C 0.017 3.983 28 C -0.152 4.152 29 H 0.086 0.914 30 H 0.067 0.933 31 H 0.080 0.920 32 H 0.096 0.904 33 H 0.079 0.921 34 H 0.243 0.757 35 H 0.177 0.823 36 H 0.275 0.725 37 H 0.198 0.802 38 H 0.062 0.938 39 H 0.085 0.915 40 H 0.026 0.974 41 H 0.065 0.935 42 H 0.058 0.942 43 H 0.041 0.959 44 H 0.066 0.934 45 H 0.103 0.897 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.107 20.858 6.087 22.320 hybrid contribution 0.156 -1.993 0.591 2.085 sum -4.951 18.865 6.678 20.616 Atomic orbital electron populations 1.21882 0.93539 1.01862 1.02174 1.20577 0.96501 0.92284 0.96109 1.21425 0.98780 0.91133 0.86984 1.45830 1.53092 1.10869 1.26161 1.16909 0.79805 0.81627 0.83751 1.90853 1.39485 1.66977 1.46748 1.20020 1.04513 0.93800 0.93508 1.20027 1.03706 0.94520 0.93556 1.19425 1.08658 0.88486 0.96088 1.84027 1.58507 1.37315 1.28510 1.25089 0.92420 0.93133 0.93123 1.21020 1.08755 0.98533 0.95536 1.19539 1.05074 0.89944 0.95704 1.41102 1.41671 1.13069 1.16763 0.72716 1.22064 0.99718 0.97011 0.96873 1.20590 0.95469 0.89884 0.88698 1.44280 1.66938 1.20825 1.01281 1.19449 1.19209 0.94524 1.05991 0.92042 1.25685 0.98698 0.99905 1.00125 1.70150 1.29401 1.39826 1.18396 0.85444 0.79241 0.79353 0.77038 1.20793 1.21996 1.20290 1.21051 0.96620 0.92438 0.88227 1.21888 1.00268 0.96045 0.96957 0.91385 0.93334 0.91988 0.90435 0.92113 0.75686 0.82251 0.72512 0.80201 0.93812 0.91462 0.97351 0.93493 0.94196 0.95934 0.93392 0.89747 0.92809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.46 7.54 71.98 0.54 -2.91 16 2 C -0.05 -1.49 0.53 -52.15 -0.03 -1.51 16 3 C 0.14 3.45 4.56 86.38 0.39 3.85 16 4 N -0.71 -15.73 4.94 -467.25 -2.31 -18.04 16 5 C 0.59 15.36 7.78 86.39 0.67 16.03 16 6 O -0.56 -18.44 16.87 -4.43 -0.07 -18.52 16 7 C -0.01 -0.14 7.03 40.19 0.28 0.14 16 8 C -0.09 -2.20 10.58 22.57 0.24 -1.96 16 9 C -0.08 -1.75 8.20 22.90 0.19 -1.56 16 10 O -0.19 -3.67 10.68 -11.38 -0.12 -3.79 16 11 C 0.03 0.33 12.02 66.95 0.80 1.13 16 12 C -0.22 -2.93 10.89 22.19 0.24 -2.69 16 13 C 0.01 0.24 8.11 39.33 0.32 0.55 16 14 N -0.52 -9.66 6.08 -176.19 -1.07 -10.73 16 15 H 0.43 5.65 8.16 -92.71 -0.76 4.90 16 16 C -0.12 -3.91 4.75 30.67 0.15 -3.77 16 17 C 0.18 7.99 4.84 86.36 0.42 8.41 16 18 N -0.61 -29.25 2.99 -699.12 -2.09 -31.34 16 19 C -0.26 -14.14 9.59 84.03 0.81 -13.33 16 20 H 0.06 3.28 7.89 -2.91 -0.02 3.26 16 21 C -0.05 -2.67 4.91 84.86 0.42 -2.26 16 22 N -0.93 -53.67 11.19 21.65 0.24 -53.43 16 23 Si 0.96 44.49 29.59 68.60 2.03 46.52 16 24 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 25 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 26 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 27 C 0.14 5.51 6.04 86.36 0.52 6.03 16 28 C -0.11 -3.40 4.91 30.67 0.15 -3.25 16 29 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.05 1.52 4.98 -2.39 -0.01 1.51 16 31 H 0.06 1.29 6.86 -2.39 -0.02 1.27 16 32 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.41 7.40 5.25 -92.71 -0.49 6.91 16 35 H 0.16 3.68 8.06 -2.91 -0.02 3.66 16 36 H 0.26 0.07 8.06 -2.91 -0.02 0.05 16 37 H 0.18 1.39 8.06 -2.91 -0.02 1.36 16 38 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.07 1.87 6.82 -2.39 -0.02 1.85 16 40 H 0.01 0.39 6.69 -2.39 -0.02 0.38 16 41 H 0.05 2.45 6.04 -2.39 -0.01 2.44 16 42 H 0.25 13.98 8.31 -92.72 -0.77 13.21 16 43 H 0.02 0.88 6.69 -2.38 -0.02 0.86 16 44 H 0.05 1.87 7.94 -2.39 -0.02 1.86 16 45 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 46 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -71.93 364.57 2.50 -69.42 By element: Atomic # 1 Polarization: 17.20 SS G_CDS: -0.21 Total: 16.99 kcal Atomic # 6 Polarization: -3.20 SS G_CDS: 6.11 Total: 2.91 kcal Atomic # 7 Polarization: -108.31 SS G_CDS: -5.23 Total: -113.54 kcal Atomic # 8 Polarization: -22.11 SS G_CDS: -0.20 Total: -22.30 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Total: -71.93 2.50 -69.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716885017.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.637 kcal (2) G-P(sol) polarization free energy of solvation -71.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.422 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds