Wall clock time and date at job start Tue Mar 31 2020 17:38:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46502 * 109.46130 * 2 1 4 4 C 1.36939 * 120.00141 * 299.97343 * 3 2 1 5 5 H 1.08011 * 119.99521 * 0.02562 * 4 3 2 6 6 C 1.38810 * 120.00538 * 179.97438 * 4 3 2 7 7 N 1.31618 * 119.99531 * 359.97438 * 6 4 3 8 8 Si 1.86793 * 120.00139 * 180.02562 * 6 4 3 9 9 H 1.48504 * 109.47038 * 90.00258 * 8 6 4 10 10 H 1.48504 * 109.46945 * 210.00007 * 8 6 4 11 11 H 1.48501 * 109.47245 * 329.99785 * 8 6 4 12 12 C 1.53044 * 109.46175 * 119.97219 * 2 1 3 13 13 C 1.53191 * 109.33857 * 181.37042 * 12 2 1 14 14 N 1.46932 * 108.77081 * 305.41499 * 13 12 2 15 15 C 1.34780 * 120.60411 * 233.57916 * 14 13 12 16 16 O 1.21358 * 120.00376 * 171.24900 * 15 14 13 17 17 C 1.49362 * 119.99900 * 351.24738 * 15 14 13 18 18 O 1.21377 * 119.99857 * 353.42595 * 17 15 14 19 19 N 1.34776 * 119.99820 * 173.42998 * 17 15 14 20 20 C 1.39719 * 119.99743 * 183.64305 * 19 17 15 21 21 C 1.38931 * 120.07712 * 324.22629 * 20 19 17 22 22 C 1.38101 * 119.92216 * 179.81323 * 21 20 19 23 23 C 1.38287 * 120.07658 * 0.43911 * 22 21 20 24 24 C 1.38290 * 120.15362 * 359.78865 * 23 22 21 25 25 C 1.38097 * 120.07504 * 0.02562 * 24 23 22 26 26 C 1.46919 * 118.76756 * 53.55780 * 14 13 12 27 27 C 1.53038 * 109.46028 * 240.04210 * 2 1 3 28 28 H 1.09006 * 109.47203 * 300.02677 * 1 2 3 29 29 H 1.09004 * 109.47390 * 60.02660 * 1 2 3 30 30 H 1.09003 * 109.46951 * 180.02562 * 1 2 3 31 31 H 0.96998 * 120.00329 * 119.96779 * 3 2 1 32 32 H 0.97000 * 120.00087 * 179.97438 * 7 6 4 33 33 H 1.08994 * 109.49496 * 301.33635 * 12 2 1 34 34 H 1.08994 * 109.49509 * 61.40228 * 12 2 1 35 35 H 1.09001 * 109.58858 * 65.16781 * 13 12 2 36 36 H 1.09000 * 109.58805 * 185.59601 * 13 12 2 37 37 H 0.96991 * 120.00388 * 3.63808 * 19 17 15 38 38 H 1.08004 * 120.03874 * 359.97438 * 21 20 19 39 39 H 1.08003 * 119.95757 * 180.21281 * 22 21 20 40 40 H 1.08007 * 119.92513 * 179.76609 * 23 22 21 41 41 H 1.07998 * 119.96447 * 179.97438 * 24 23 22 42 42 H 1.07997 * 120.03541 * 179.97438 * 25 24 23 43 43 H 1.09003 * 109.59056 * 186.62496 * 26 14 13 44 44 H 1.09005 * 109.70371 * 66.26995 * 26 14 13 45 45 H 1.08998 * 109.50128 * 298.56558 * 27 2 1 46 46 H 1.08995 * 109.50259 * 58.62846 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0180 1.3813 0.0000 4 6 1.6875 2.2243 -1.0273 5 1 1.0666 1.8709 -1.8374 6 6 2.1495 3.5333 -1.0271 7 7 2.9049 3.9643 -0.0392 8 14 1.6981 4.6833 -2.4281 9 1 0.4348 5.3916 -2.0996 10 1 2.7854 5.6756 -2.6240 11 1 1.5150 3.8971 -3.6746 12 6 2.0399 -0.7209 1.2500 13 6 3.5714 -0.6894 1.2646 14 7 4.0678 -1.2487 -0.0002 15 6 4.9617 -2.2574 -0.0003 16 8 5.2448 -2.8173 -1.0392 17 6 5.6040 -2.6863 1.2781 18 8 5.4135 -2.0523 2.2955 19 7 6.3951 -3.7772 1.3020 20 6 6.9344 -4.2226 2.5115 21 6 7.3235 -3.3057 3.4800 22 6 7.8527 -3.7496 4.6759 23 6 8.0039 -5.1047 4.9063 24 6 7.6220 -6.0200 3.9425 25 6 7.0886 -5.5832 2.7460 26 6 3.5714 -0.6884 -1.2643 27 6 2.0398 -0.7206 -1.2502 28 1 -0.3634 0.5143 0.8898 29 1 -0.3634 0.5134 -0.8902 30 1 -0.3633 -1.0277 0.0005 31 1 2.5753 1.6989 0.7277 32 1 3.2281 4.8789 -0.0392 33 1 1.6572 -0.2209 2.1398 34 1 1.6973 -1.7556 1.2384 35 1 3.9147 0.3400 1.3680 36 1 3.9413 -1.2858 2.0986 37 1 6.5899 -4.2531 0.4797 38 1 7.2099 -2.2470 3.2989 39 1 8.1521 -3.0374 5.4306 40 1 8.4215 -5.4490 5.8409 41 1 7.7419 -7.0776 4.1255 42 1 6.7910 -6.2986 1.9936 43 1 3.9416 -1.2842 -2.0986 44 1 3.9143 0.3409 -1.3699 45 1 1.6978 -1.7554 -1.2386 46 1 1.6567 -0.2209 -2.1398 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724956977.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:24 Heat of formation + Delta-G solvation = -5.594160 kcal Electronic energy + Delta-G solvation = -28764.037514 eV Core-core repulsion = 24847.797251 eV Total energy + Delta-G solvation = -3916.240263 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.27553 -39.73259 -38.42739 -37.80130 -35.44141 -34.28205 -32.32440 -31.16832 -30.75524 -29.98472 -29.10649 -27.94221 -25.29033 -23.96901 -23.26485 -22.80792 -22.70021 -21.47274 -20.19388 -18.73116 -17.87664 -17.34995 -17.08783 -16.81611 -16.21226 -16.05683 -15.38833 -14.92544 -14.67604 -14.39247 -14.11094 -13.96654 -13.90798 -13.71998 -13.57397 -13.32917 -13.13013 -12.92159 -12.49680 -12.37520 -11.85647 -11.55787 -11.49605 -11.34277 -11.24595 -11.21351 -10.89203 -10.79617 -10.71611 -10.58785 -10.33140 -10.16026 -9.81950 -9.57527 -9.21613 -8.97821 -8.92736 -8.47110 -8.34151 -6.96993 -5.77893 -3.06295 0.85269 1.15996 1.53172 2.27266 3.14113 3.41875 3.47549 3.49030 3.49292 3.59613 4.24991 4.57476 4.65263 4.70800 4.91689 5.14572 5.20485 5.27784 5.34157 5.39153 5.39299 5.58360 5.63573 5.74858 5.78777 5.83581 5.96197 6.02264 6.04824 6.12189 6.17589 6.24791 6.29255 6.37809 6.38977 6.42764 6.50346 6.58867 6.64955 6.76308 6.88109 6.90158 6.99701 7.05127 7.47418 7.64438 7.70464 8.00164 8.40441 9.52135 10.08820 10.44327 11.44614 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.020861 B = 0.002740 C = 0.002674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.867734 B =10215.820055 C =10466.824843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.195 3.805 3 N -0.716 5.716 4 C -0.232 4.232 5 H 0.070 0.930 6 C -0.012 4.012 7 N -0.932 5.932 8 Si 0.902 3.098 9 H -0.291 1.291 10 H -0.293 1.293 11 H -0.283 1.283 12 C -0.129 4.129 13 C 0.072 3.928 14 N -0.557 5.557 15 C 0.503 3.497 16 O -0.536 6.536 17 C 0.510 3.490 18 O -0.488 6.488 19 N -0.648 5.648 20 C 0.141 3.859 21 C -0.118 4.118 22 C -0.101 4.101 23 C -0.134 4.134 24 C -0.103 4.103 25 C -0.141 4.141 26 C 0.117 3.883 27 C -0.133 4.133 28 H 0.050 0.950 29 H 0.055 0.945 30 H 0.035 0.965 31 H 0.384 0.616 32 H 0.254 0.746 33 H 0.076 0.924 34 H 0.060 0.940 35 H 0.082 0.918 36 H 0.128 0.872 37 H 0.422 0.578 38 H 0.140 0.860 39 H 0.127 0.873 40 H 0.123 0.877 41 H 0.126 0.874 42 H 0.127 0.873 43 H 0.079 0.921 44 H 0.094 0.906 45 H 0.049 0.951 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.693 -19.512 7.301 22.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.103 3.897 3 N -0.359 5.359 4 C -0.363 4.363 5 H 0.088 0.912 6 C -0.208 4.208 7 N -0.580 5.580 8 Si 0.733 3.267 9 H -0.219 1.219 10 H -0.219 1.219 11 H -0.208 1.208 12 C -0.168 4.168 13 C -0.049 4.049 14 N -0.289 5.289 15 C 0.284 3.716 16 O -0.414 6.414 17 C 0.294 3.706 18 O -0.362 6.362 19 N -0.295 5.295 20 C 0.048 3.952 21 C -0.138 4.138 22 C -0.120 4.120 23 C -0.153 4.153 24 C -0.122 4.122 25 C -0.162 4.162 26 C -0.004 4.004 27 C -0.173 4.173 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.054 0.946 31 H 0.219 0.781 32 H 0.064 0.936 33 H 0.095 0.905 34 H 0.079 0.921 35 H 0.100 0.900 36 H 0.145 0.855 37 H 0.260 0.740 38 H 0.158 0.842 39 H 0.145 0.855 40 H 0.141 0.859 41 H 0.144 0.856 42 H 0.145 0.855 43 H 0.098 0.902 44 H 0.113 0.887 45 H 0.067 0.933 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 7.586 -19.187 7.271 21.877 hybrid contribution -0.122 0.750 -0.998 1.255 sum 7.464 -18.437 6.274 20.856 Atomic orbital electron populations 1.22217 0.97562 0.98989 1.02147 1.19571 0.92200 0.86311 0.91575 1.42509 1.60683 1.05714 1.26958 1.19119 1.25390 0.91637 1.00178 0.91173 1.24696 1.00617 0.97360 0.98165 1.69649 1.39339 1.16773 1.32273 0.86272 0.77419 0.81097 0.81888 1.21879 1.21924 1.20841 1.22105 0.94984 1.00250 0.99452 1.22834 0.94540 1.01759 0.85775 1.48054 1.39035 1.31857 1.09918 1.19631 0.81806 0.81814 0.88302 1.90733 1.63334 1.54404 1.32979 1.20617 0.79334 0.80713 0.89936 1.90554 1.58512 1.52009 1.35121 1.43209 1.47325 1.29006 1.09958 1.17784 0.97528 0.92871 0.87054 1.21356 0.98113 1.00598 0.93761 1.21100 0.98309 0.95837 0.96751 1.21184 1.01282 0.93317 0.99524 1.20940 0.98481 0.99735 0.93044 1.20949 1.03105 0.93366 0.98729 1.21804 0.95041 0.99911 0.83676 1.22303 0.94302 0.99253 1.01427 0.93102 0.92548 0.94610 0.78115 0.93576 0.90524 0.92115 0.89991 0.85547 0.73976 0.84199 0.85524 0.85940 0.85622 0.85525 0.90221 0.88736 0.93274 0.90433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.64 8.44 37.15 0.31 -2.33 16 2 C 0.19 3.59 0.74 -131.78 -0.10 3.50 16 3 N -0.72 -16.37 4.13 -47.19 -0.20 -16.57 16 4 C -0.23 -5.95 8.68 -15.06 -0.13 -6.08 16 5 H 0.07 1.77 6.70 -52.48 -0.35 1.41 16 6 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 7 N -0.93 -27.10 13.06 55.49 0.72 -26.37 16 8 Si 0.90 21.85 29.55 -169.99 -5.02 16.83 16 9 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 10 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 C -0.13 -2.08 4.96 -26.61 -0.13 -2.22 16 13 C 0.07 1.19 5.71 -3.71 -0.02 1.16 16 14 N -0.56 -9.30 2.97 -173.30 -0.52 -9.82 16 15 C 0.50 7.97 7.73 -11.63 -0.09 7.88 16 16 O -0.54 -9.14 15.92 5.49 0.09 -9.05 16 17 C 0.51 7.14 7.57 -11.63 -0.09 7.05 16 18 O -0.49 -7.42 10.68 5.47 0.06 -7.36 16 19 N -0.65 -7.36 5.32 -10.29 -0.05 -7.41 16 20 C 0.14 1.55 6.28 -83.75 -0.53 1.02 16 21 C -0.12 -1.35 8.68 -39.37 -0.34 -1.69 16 22 C -0.10 -0.95 10.04 -39.61 -0.40 -1.35 16 23 C -0.13 -1.08 10.04 -39.54 -0.40 -1.48 16 24 C -0.10 -0.81 10.04 -39.61 -0.40 -1.20 16 25 C -0.14 -1.25 9.97 -39.38 -0.39 -1.64 16 26 C 0.12 2.08 6.18 -3.71 -0.02 2.06 16 27 C -0.13 -2.32 4.71 -26.61 -0.13 -2.45 16 28 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.06 1.06 7.27 -51.93 -0.38 0.68 16 30 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.38 9.51 6.46 -40.82 -0.26 9.24 16 32 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 33 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.08 1.52 6.94 -51.93 -0.36 1.16 16 36 H 0.13 1.99 4.32 -54.80 -0.24 1.75 16 37 H 0.42 4.07 8.30 -40.82 -0.34 3.73 16 38 H 0.14 1.78 6.31 -52.48 -0.33 1.45 16 39 H 0.13 0.95 8.06 -52.48 -0.42 0.53 16 40 H 0.12 0.70 8.06 -52.48 -0.42 0.28 16 41 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 42 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 43 H 0.08 1.38 7.01 -51.93 -0.36 1.01 16 44 H 0.09 1.95 7.74 -51.93 -0.40 1.55 16 45 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 46 H 0.08 1.43 7.31 -51.93 -0.38 1.05 16 LS Contribution 367.85 15.07 5.54 5.54 Total: -1.00 -29.84 367.85 -8.66 -38.51 By element: Atomic # 1 Polarization: 20.23 SS G_CDS: -6.35 Total: 13.89 kcal Atomic # 6 Polarization: 4.75 SS G_CDS: -2.94 Total: 1.81 kcal Atomic # 7 Polarization: -60.13 SS G_CDS: -0.04 Total: -60.17 kcal Atomic # 8 Polarization: -16.55 SS G_CDS: 0.15 Total: -16.41 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -29.84 -8.66 -38.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724956977.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.912 kcal (2) G-P(sol) polarization free energy of solvation -29.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds