Wall clock time and date at job start Tue Mar 31 2020 17:38:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46502 * 109.46130 * 2 1 4 4 C 1.36939 * 120.00141 * 299.97343 * 3 2 1 5 5 H 1.08011 * 119.99521 * 0.02562 * 4 3 2 6 6 C 1.38810 * 120.00538 * 179.97438 * 4 3 2 7 7 N 1.31618 * 119.99531 * 359.97438 * 6 4 3 8 8 Si 1.86793 * 120.00139 * 180.02562 * 6 4 3 9 9 H 1.48504 * 109.47038 * 90.00258 * 8 6 4 10 10 H 1.48504 * 109.46945 * 210.00007 * 8 6 4 11 11 H 1.48501 * 109.47245 * 329.99785 * 8 6 4 12 12 C 1.53044 * 109.46175 * 119.97219 * 2 1 3 13 13 C 1.53191 * 109.33857 * 181.37042 * 12 2 1 14 14 N 1.46932 * 108.77081 * 305.41499 * 13 12 2 15 15 C 1.34780 * 120.60411 * 233.57916 * 14 13 12 16 16 O 1.21358 * 120.00376 * 171.24900 * 15 14 13 17 17 C 1.49362 * 119.99900 * 351.24738 * 15 14 13 18 18 O 1.21377 * 119.99857 * 353.42595 * 17 15 14 19 19 N 1.34776 * 119.99820 * 173.42998 * 17 15 14 20 20 C 1.39719 * 119.99743 * 183.64305 * 19 17 15 21 21 C 1.38931 * 120.07712 * 324.22629 * 20 19 17 22 22 C 1.38101 * 119.92216 * 179.81323 * 21 20 19 23 23 C 1.38287 * 120.07658 * 0.43911 * 22 21 20 24 24 C 1.38290 * 120.15362 * 359.78865 * 23 22 21 25 25 C 1.38097 * 120.07504 * 0.02562 * 24 23 22 26 26 C 1.46919 * 118.76756 * 53.55780 * 14 13 12 27 27 C 1.53038 * 109.46028 * 240.04210 * 2 1 3 28 28 H 1.09006 * 109.47203 * 300.02677 * 1 2 3 29 29 H 1.09004 * 109.47390 * 60.02660 * 1 2 3 30 30 H 1.09003 * 109.46951 * 180.02562 * 1 2 3 31 31 H 0.96998 * 120.00329 * 119.96779 * 3 2 1 32 32 H 0.97000 * 120.00087 * 179.97438 * 7 6 4 33 33 H 1.08994 * 109.49496 * 301.33635 * 12 2 1 34 34 H 1.08994 * 109.49509 * 61.40228 * 12 2 1 35 35 H 1.09001 * 109.58858 * 65.16781 * 13 12 2 36 36 H 1.09000 * 109.58805 * 185.59601 * 13 12 2 37 37 H 0.96991 * 120.00388 * 3.63808 * 19 17 15 38 38 H 1.08004 * 120.03874 * 359.97438 * 21 20 19 39 39 H 1.08003 * 119.95757 * 180.21281 * 22 21 20 40 40 H 1.08007 * 119.92513 * 179.76609 * 23 22 21 41 41 H 1.07998 * 119.96447 * 179.97438 * 24 23 22 42 42 H 1.07997 * 120.03541 * 179.97438 * 25 24 23 43 43 H 1.09003 * 109.59056 * 186.62496 * 26 14 13 44 44 H 1.09005 * 109.70371 * 66.26995 * 26 14 13 45 45 H 1.08998 * 109.50128 * 298.56558 * 27 2 1 46 46 H 1.08995 * 109.50259 * 58.62846 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0180 1.3813 0.0000 4 6 1.6875 2.2243 -1.0273 5 1 1.0666 1.8709 -1.8374 6 6 2.1495 3.5333 -1.0271 7 7 2.9049 3.9643 -0.0392 8 14 1.6981 4.6833 -2.4281 9 1 0.4348 5.3916 -2.0996 10 1 2.7854 5.6756 -2.6240 11 1 1.5150 3.8971 -3.6746 12 6 2.0399 -0.7209 1.2500 13 6 3.5714 -0.6894 1.2646 14 7 4.0678 -1.2487 -0.0002 15 6 4.9617 -2.2574 -0.0003 16 8 5.2448 -2.8173 -1.0392 17 6 5.6040 -2.6863 1.2781 18 8 5.4135 -2.0523 2.2955 19 7 6.3951 -3.7772 1.3020 20 6 6.9344 -4.2226 2.5115 21 6 7.3235 -3.3057 3.4800 22 6 7.8527 -3.7496 4.6759 23 6 8.0039 -5.1047 4.9063 24 6 7.6220 -6.0200 3.9425 25 6 7.0886 -5.5832 2.7460 26 6 3.5714 -0.6884 -1.2643 27 6 2.0398 -0.7206 -1.2502 28 1 -0.3634 0.5143 0.8898 29 1 -0.3634 0.5134 -0.8902 30 1 -0.3633 -1.0277 0.0005 31 1 2.5753 1.6989 0.7277 32 1 3.2281 4.8789 -0.0392 33 1 1.6572 -0.2209 2.1398 34 1 1.6973 -1.7556 1.2384 35 1 3.9147 0.3400 1.3680 36 1 3.9413 -1.2858 2.0986 37 1 6.5899 -4.2531 0.4797 38 1 7.2099 -2.2470 3.2989 39 1 8.1521 -3.0374 5.4306 40 1 8.4215 -5.4490 5.8409 41 1 7.7419 -7.0776 4.1255 42 1 6.7910 -6.2986 1.9936 43 1 3.9416 -1.2842 -2.0986 44 1 3.9143 0.3409 -1.3699 45 1 1.6978 -1.7554 -1.2386 46 1 1.6567 -0.2209 -2.1398 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724956977.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:23 Heat of formation + Delta-G solvation = -23.931995 kcal Electronic energy + Delta-G solvation = -28764.832703 eV Core-core repulsion = 24847.797251 eV Total energy + Delta-G solvation = -3917.035452 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.39916 -40.83476 -39.51391 -39.09076 -36.59795 -35.62205 -34.15735 -32.16775 -31.83666 -30.99387 -30.73850 -29.34736 -26.45604 -25.87289 -24.38687 -24.04641 -23.64228 -22.52465 -21.34909 -20.09680 -19.06957 -18.92038 -18.47605 -17.92430 -17.32835 -17.03764 -16.54959 -16.41136 -15.88388 -15.64937 -15.57628 -15.37761 -15.12187 -14.90804 -14.75554 -14.47834 -14.24252 -14.15358 -13.82270 -13.63545 -13.27518 -12.87292 -12.79833 -12.70888 -12.64971 -12.54364 -12.35338 -12.22627 -12.14835 -12.06706 -11.78774 -11.50629 -11.46354 -11.25594 -10.85877 -10.26208 -9.85718 -9.79470 -9.23366 -8.90597 -7.86585 -5.12188 -0.09188 0.46882 0.55774 1.16109 1.48273 1.48908 1.56103 1.95769 2.34323 2.60106 2.87260 3.10551 3.47411 3.82387 3.92212 3.99570 4.01830 4.06918 4.19029 4.24926 4.32213 4.43822 4.45789 4.54022 4.56727 4.59619 4.70292 4.83119 4.91061 4.98769 5.02807 5.06333 5.12332 5.13426 5.21449 5.29823 5.30393 5.36403 5.51021 5.56570 5.59840 5.63257 5.65672 5.91435 6.06418 6.19337 6.35696 6.56447 6.76987 7.42848 8.19291 8.42525 9.37088 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.020861 B = 0.002740 C = 0.002674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.867734 B =10215.820055 C =10466.824843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.185 3.815 3 N -0.723 5.723 4 C -0.211 4.211 5 H 0.076 0.924 6 C -0.077 4.077 7 N -0.970 5.970 8 Si 0.957 3.043 9 H -0.293 1.293 10 H -0.304 1.304 11 H -0.271 1.271 12 C -0.122 4.122 13 C 0.081 3.919 14 N -0.562 5.562 15 C 0.505 3.495 16 O -0.547 6.547 17 C 0.513 3.487 18 O -0.505 6.505 19 N -0.632 5.632 20 C 0.116 3.884 21 C -0.141 4.141 22 C -0.111 4.111 23 C -0.130 4.130 24 C -0.102 4.102 25 C -0.138 4.138 26 C 0.124 3.876 27 C -0.125 4.125 28 H 0.043 0.957 29 H 0.040 0.960 30 H 0.068 0.932 31 H 0.372 0.628 32 H 0.246 0.754 33 H 0.079 0.921 34 H 0.086 0.914 35 H 0.052 0.948 36 H 0.139 0.861 37 H 0.430 0.570 38 H 0.117 0.883 39 H 0.138 0.862 40 H 0.150 0.850 41 H 0.157 0.843 42 H 0.148 0.852 43 H 0.085 0.915 44 H 0.059 0.941 45 H 0.074 0.926 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.522 -22.930 7.812 25.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.096 3.904 3 N -0.364 5.364 4 C -0.343 4.343 5 H 0.094 0.906 6 C -0.269 4.269 7 N -0.622 5.622 8 Si 0.789 3.211 9 H -0.221 1.221 10 H -0.231 1.231 11 H -0.196 1.196 12 C -0.160 4.160 13 C -0.040 4.040 14 N -0.294 5.294 15 C 0.287 3.713 16 O -0.426 6.426 17 C 0.296 3.704 18 O -0.381 6.381 19 N -0.279 5.279 20 C 0.023 3.977 21 C -0.161 4.161 22 C -0.130 4.130 23 C -0.148 4.148 24 C -0.120 4.120 25 C -0.158 4.158 26 C 0.002 3.998 27 C -0.165 4.165 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.087 0.913 31 H 0.205 0.795 32 H 0.054 0.946 33 H 0.098 0.902 34 H 0.104 0.896 35 H 0.071 0.929 36 H 0.156 0.844 37 H 0.270 0.730 38 H 0.135 0.865 39 H 0.156 0.844 40 H 0.168 0.832 41 H 0.175 0.825 42 H 0.166 0.834 43 H 0.104 0.896 44 H 0.077 0.923 45 H 0.092 0.908 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 7.405 -22.682 7.761 25.091 hybrid contribution 0.005 1.626 -1.097 1.962 sum 7.411 -21.056 6.664 23.296 Atomic orbital electron populations 1.22126 0.96322 1.00786 1.01022 1.19888 0.92965 0.84288 0.93294 1.42679 1.60476 1.07394 1.25852 1.19422 1.23072 0.91608 1.00190 0.90591 1.25351 1.01964 0.99146 1.00415 1.69799 1.41630 1.16487 1.34288 0.85360 0.76424 0.79249 0.80112 1.22063 1.23094 1.19574 1.22065 0.94399 1.01291 0.98276 1.22741 0.94934 1.00281 0.86090 1.48029 1.39616 1.32289 1.09432 1.19939 0.81110 0.81253 0.88956 1.90719 1.63418 1.54780 1.33681 1.20201 0.79855 0.81500 0.88811 1.90542 1.59560 1.52754 1.35211 1.43065 1.46122 1.27849 1.10819 1.17988 0.99018 0.93915 0.86758 1.21329 0.99841 0.99767 0.95178 1.21319 0.98217 0.97154 0.96289 1.21561 1.00058 0.92590 1.00621 1.21369 0.97055 1.01349 0.92216 1.21238 1.02322 0.92543 0.99731 1.21567 0.95469 0.98121 0.84655 1.22211 0.93739 1.00324 1.00209 0.93826 0.94063 0.91340 0.79511 0.94551 0.90248 0.89585 0.92944 0.84436 0.73037 0.86489 0.84365 0.83225 0.82509 0.83421 0.89625 0.92283 0.90792 0.91515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.79 8.44 71.98 0.61 -4.18 16 2 C 0.19 6.67 0.74 3.63 0.00 6.67 16 3 N -0.72 -33.56 4.13 -303.22 -1.25 -34.82 16 4 C -0.21 -10.92 8.68 84.03 0.73 -10.19 16 5 H 0.08 3.80 6.70 -2.90 -0.02 3.78 16 6 C -0.08 -4.30 5.50 84.86 0.47 -3.83 16 7 N -0.97 -58.43 13.06 21.65 0.28 -58.15 16 8 Si 0.96 45.85 29.55 68.60 2.03 47.88 16 9 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 10 H -0.30 -14.96 7.11 99.48 0.71 -14.25 16 11 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 12 C -0.12 -3.77 4.96 30.67 0.15 -3.62 16 13 C 0.08 2.67 5.71 86.36 0.49 3.16 16 14 N -0.56 -18.71 2.97 -820.56 -2.44 -21.15 16 15 C 0.51 15.77 7.73 87.24 0.67 16.44 16 16 O -0.55 -18.18 15.92 -3.27 -0.05 -18.23 16 17 C 0.51 14.20 7.57 87.24 0.66 14.86 16 18 O -0.50 -15.50 10.68 -3.33 -0.04 -15.53 16 19 N -0.63 -13.78 5.32 -304.83 -1.62 -15.41 16 20 C 0.12 2.41 6.28 38.22 0.24 2.65 16 21 C -0.14 -3.19 8.68 22.40 0.19 -3.00 16 22 C -0.11 -1.94 10.04 22.25 0.22 -1.72 16 23 C -0.13 -1.70 10.04 22.29 0.22 -1.47 16 24 C -0.10 -1.22 10.04 22.25 0.22 -1.00 16 25 C -0.14 -2.07 9.97 22.40 0.22 -1.85 16 26 C 0.12 4.42 6.18 86.37 0.53 4.95 16 27 C -0.12 -4.21 4.71 30.67 0.14 -4.07 16 28 H 0.04 1.50 8.14 -2.38 -0.02 1.48 16 29 H 0.04 1.48 7.27 -2.38 -0.02 1.46 16 30 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.37 19.06 6.46 -92.71 -0.60 18.46 16 32 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 33 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 34 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 35 H 0.05 2.04 6.94 -2.39 -0.02 2.03 16 36 H 0.14 4.31 4.32 -47.79 -0.21 4.11 16 37 H 0.43 7.75 8.30 -92.72 -0.77 6.98 16 38 H 0.12 3.13 6.31 -2.91 -0.02 3.11 16 39 H 0.14 1.95 8.06 -2.91 -0.02 1.92 16 40 H 0.15 1.12 8.06 -2.91 -0.02 1.10 16 41 H 0.16 0.92 8.06 -2.91 -0.02 0.89 16 42 H 0.15 1.52 8.06 -2.91 -0.02 1.50 16 43 H 0.09 2.93 7.01 -2.39 -0.02 2.92 16 44 H 0.06 2.53 7.74 -2.38 -0.02 2.51 16 45 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 46 H 0.07 2.39 7.31 -2.39 -0.02 2.38 16 Total: -1.00 -65.70 367.85 2.16 -63.55 By element: Atomic # 1 Polarization: 38.58 SS G_CDS: -0.54 Total: 38.04 kcal Atomic # 6 Polarization: 8.02 SS G_CDS: 5.79 Total: 13.81 kcal Atomic # 7 Polarization: -124.49 SS G_CDS: -5.03 Total: -129.52 kcal Atomic # 8 Polarization: -33.67 SS G_CDS: -0.09 Total: -33.76 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.88 kcal Total: -65.70 2.16 -63.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724956977.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.613 kcal (2) G-P(sol) polarization free energy of solvation -65.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds