Wall clock time and date at job start Tue Mar 31 2020 17:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50704 * 110.21608 * 2 1 4 4 O 1.21285 * 120.00072 * 94.52239 * 3 2 1 5 5 N 1.34772 * 120.00138 * 274.52662 * 3 2 1 6 6 C 1.46497 * 120.00143 * 179.97438 * 5 3 2 7 7 C 1.53005 * 109.47517 * 179.97438 * 6 5 3 8 8 H 1.08996 * 109.46857 * 295.00564 * 7 6 5 9 9 N 1.46502 * 109.46934 * 54.99711 * 7 6 5 10 10 C 1.36946 * 119.99843 * 57.00493 * 9 7 6 11 11 H 1.07996 * 119.99576 * 353.93165 * 10 9 7 12 12 C 1.38809 * 119.99974 * 173.64990 * 10 9 7 13 13 N 1.31617 * 119.99710 * 179.97438 * 12 10 9 14 14 Si 1.86803 * 120.00035 * 0.02562 * 12 10 9 15 15 H 1.48502 * 109.47050 * 89.99267 * 14 12 10 16 16 H 1.48499 * 109.46876 * 209.99772 * 14 12 10 17 17 H 1.48498 * 109.47014 * 329.99463 * 14 12 10 18 18 C 1.50692 * 109.47338 * 174.99951 * 7 6 5 19 19 C 1.38237 * 120.00048 * 206.23584 * 18 7 6 20 20 C 1.38232 * 120.00195 * 179.78659 * 19 18 7 21 21 C 1.38242 * 119.99781 * 0.44255 * 20 19 18 22 22 C 1.38232 * 119.99936 * 359.81523 * 21 20 19 23 23 C 1.38234 * 120.00231 * 26.51214 * 18 7 6 24 24 C 1.54474 * 110.31960 * 121.97849 * 2 1 3 25 25 C 1.54629 * 101.76744 * 144.45626 * 24 2 1 26 26 C 1.51284 * 104.19177 * 335.20487 * 25 24 2 27 27 O 1.21281 * 124.94071 * 196.23045 * 26 25 24 28 28 N 1.34419 * 110.12004 * 16.25092 * 26 25 24 29 29 H 1.09012 * 109.47318 * 59.29898 * 1 2 3 30 30 H 1.09003 * 109.47609 * 179.29522 * 1 2 3 31 31 H 1.08996 * 109.47520 * 299.29770 * 1 2 3 32 32 H 0.97002 * 120.00132 * 359.97438 * 5 3 2 33 33 H 1.08994 * 109.47251 * 59.99669 * 6 5 3 34 34 H 1.08999 * 109.47181 * 299.99811 * 6 5 3 35 35 H 0.96990 * 120.00474 * 237.00711 * 9 7 6 36 36 H 0.97000 * 119.99395 * 180.02562 * 13 12 10 37 37 H 1.08003 * 120.00011 * 359.97438 * 19 18 7 38 38 H 1.08003 * 120.00487 * 180.27472 * 20 19 18 39 39 H 1.08002 * 119.99445 * 179.83044 * 21 20 19 40 40 H 1.07999 * 119.99844 * 179.97438 * 22 21 20 41 41 H 1.08006 * 119.99992 * 359.97438 * 23 18 7 42 42 H 1.09000 * 110.96903 * 262.57483 * 24 2 1 43 43 H 1.09001 * 110.96839 * 26.33511 * 24 2 1 44 44 H 1.08997 * 110.48597 * 216.52779 * 25 24 2 45 45 H 1.09002 * 110.48589 * 93.88007 * 25 24 2 46 46 H 0.96994 * 124.35057 * 180.43320 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0507 1.4142 0.0000 4 8 2.3380 1.9547 1.0471 5 7 2.1972 2.0784 -1.1635 6 6 2.7029 3.4533 -1.1635 7 6 2.7730 3.9711 -2.6015 8 1 3.5091 3.3931 -3.1602 9 7 1.4596 3.8318 -3.2353 10 6 0.3608 4.4231 -2.6709 11 1 0.4428 4.9084 -1.7097 12 6 -0.8568 4.4038 -3.3371 13 7 -1.9129 4.9717 -2.7944 14 14 -0.9969 3.5705 -5.0031 15 1 -1.3598 2.1431 -4.8137 16 1 -2.0467 4.2458 -5.8075 17 1 0.3046 3.6604 -5.7125 18 6 3.1755 5.4233 -2.5935 19 6 2.8014 6.2499 -3.6365 20 6 3.1668 7.5830 -3.6270 21 6 3.9141 8.0875 -2.5791 22 6 4.2926 7.2596 -1.5388 23 6 3.9235 5.9275 -1.5461 24 6 2.0664 -0.7672 1.2288 25 6 3.3310 -1.4437 0.6508 26 6 3.0535 -1.5422 -0.8332 27 8 3.6596 -2.2521 -1.6075 28 7 2.0379 -0.7282 -1.1687 29 1 -0.3634 0.5247 -0.8837 30 1 -0.3634 -1.0276 -0.0126 31 1 -0.3634 0.5029 0.8962 32 1 1.9677 1.6461 -2.0010 33 1 3.6988 3.4741 -0.7212 34 1 2.0335 4.0866 -0.5812 35 1 1.3681 3.3207 -4.0546 36 1 -2.7638 4.9578 -3.2598 37 1 2.2212 5.8549 -4.4573 38 1 2.8709 8.2299 -4.4397 39 1 4.2018 9.1284 -2.5731 40 1 4.8767 7.6536 -0.7203 41 1 4.2192 5.2807 -0.7332 42 1 2.3252 -0.0806 2.0348 43 1 1.3464 -1.5117 1.5686 44 1 3.4629 -2.4365 1.0809 45 1 4.2110 -0.8274 0.8342 46 1 1.6857 -0.6344 -2.0675 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732020795.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:16:38 Heat of formation + Delta-G solvation = -27.249038 kcal Electronic energy + Delta-G solvation = -29108.218072 eV Core-core repulsion = 25191.038783 eV Total energy + Delta-G solvation = -3917.179289 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.11016 -39.27180 -38.66888 -36.59687 -35.98721 -33.70053 -32.10947 -31.35176 -30.93789 -30.57212 -29.95581 -27.57617 -25.13776 -24.41580 -22.98043 -22.11541 -21.61417 -20.82797 -19.93502 -19.67634 -18.20026 -18.02443 -16.85780 -16.54121 -15.63877 -15.43237 -15.28195 -14.78864 -14.73752 -14.38998 -14.22854 -14.09670 -13.90474 -13.65441 -13.43061 -12.93467 -12.92366 -12.73921 -12.67523 -12.60537 -12.30339 -12.22210 -12.08282 -11.59501 -11.32703 -11.16458 -11.09813 -10.92604 -10.72457 -10.49785 -10.33973 -10.22027 -9.99324 -9.69387 -9.16823 -9.03537 -8.66028 -8.41055 -8.19531 -7.50849 -5.89659 -3.30498 1.84130 1.92785 2.43961 2.65504 3.21897 3.22804 3.24847 3.33729 3.37848 4.10115 4.27385 4.32829 4.43446 4.57792 4.84206 4.93605 5.04355 5.14556 5.29013 5.30929 5.39748 5.43991 5.45716 5.53874 5.57797 5.60740 5.66206 5.72478 5.79989 5.86990 5.93151 6.04441 6.10155 6.15663 6.45625 6.50186 6.54961 6.55487 6.74173 6.82902 6.93625 7.00468 7.20294 7.50749 7.77708 7.84403 8.07905 8.26929 8.42008 9.02546 9.73269 9.89979 11.27712 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.010361 B = 0.004390 C = 0.003567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2701.763931 B = 6376.647355 C = 7847.151078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.142 3.858 3 C 0.511 3.489 4 O -0.542 6.542 5 N -0.693 5.693 6 C 0.114 3.886 7 C 0.203 3.797 8 H 0.074 0.926 9 N -0.740 5.740 10 C -0.240 4.240 11 H 0.092 0.908 12 C 0.013 3.987 13 N -0.926 5.926 14 Si 0.876 3.124 15 H -0.285 1.285 16 H -0.292 1.292 17 H -0.276 1.276 18 C -0.077 4.077 19 C -0.074 4.074 20 C -0.128 4.128 21 C -0.131 4.131 22 C -0.129 4.129 23 C -0.124 4.124 24 C -0.115 4.115 25 C -0.158 4.158 26 C 0.524 3.476 27 O -0.534 6.534 28 N -0.721 5.721 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.399 0.601 33 H 0.060 0.940 34 H 0.077 0.923 35 H 0.364 0.636 36 H 0.260 0.740 37 H 0.124 0.876 38 H 0.113 0.887 39 H 0.111 0.889 40 H 0.113 0.887 41 H 0.118 0.882 42 H 0.110 0.890 43 H 0.091 0.909 44 H 0.104 0.896 45 H 0.105 0.895 46 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.495 -6.843 4.360 12.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.052 3.948 3 C 0.294 3.706 4 O -0.420 6.420 5 N -0.342 5.342 6 C -0.011 4.011 7 C 0.092 3.908 8 H 0.092 0.908 9 N -0.381 5.381 10 C -0.370 4.370 11 H 0.109 0.891 12 C -0.184 4.184 13 N -0.572 5.572 14 Si 0.706 3.294 15 H -0.212 1.212 16 H -0.218 1.218 17 H -0.202 1.202 18 C -0.080 4.080 19 C -0.092 4.092 20 C -0.146 4.146 21 C -0.150 4.150 22 C -0.148 4.148 23 C -0.143 4.143 24 C -0.153 4.153 25 C -0.198 4.198 26 C 0.310 3.690 27 O -0.411 6.411 28 N -0.378 5.378 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.101 0.899 32 H 0.234 0.766 33 H 0.078 0.922 34 H 0.095 0.905 35 H 0.196 0.804 36 H 0.070 0.930 37 H 0.142 0.858 38 H 0.131 0.869 39 H 0.129 0.871 40 H 0.131 0.869 41 H 0.136 0.864 42 H 0.128 0.872 43 H 0.109 0.891 44 H 0.123 0.877 45 H 0.124 0.876 46 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 9.884 -6.685 4.936 12.913 hybrid contribution -0.839 -0.366 -2.077 2.270 sum 9.045 -7.051 2.859 11.820 Atomic orbital electron populations 1.22059 0.90570 1.03506 1.04885 1.21267 0.96754 0.89623 0.87167 1.20473 0.78247 0.87674 0.84240 1.90682 1.50844 1.69144 1.31302 1.45655 1.64833 1.15111 1.08606 1.21870 0.98208 0.82052 0.98970 1.19305 0.88147 0.91074 0.92278 0.90826 1.42778 1.03333 1.62991 1.28994 1.18908 0.85890 1.29360 1.02833 0.89065 1.24677 0.95973 1.00108 0.97598 1.69696 1.00384 1.48173 1.38952 0.86714 0.77372 0.79447 0.85854 1.21197 1.21820 1.20199 1.20498 0.96055 0.97286 0.94165 1.20956 0.96752 0.92858 0.98659 1.21103 0.99038 0.95790 0.98680 1.20999 0.99816 0.99094 0.95054 1.20977 1.01236 0.94082 0.98466 1.21090 0.99338 0.95564 0.98284 1.22662 0.96426 0.99643 0.96545 1.22401 1.00314 1.03993 0.93100 1.20911 0.78719 0.78200 0.91151 1.90758 1.51870 1.40938 1.57538 1.46391 1.36391 1.43844 1.11188 0.90555 0.90817 0.89911 0.76617 0.92239 0.90466 0.80362 0.92991 0.85783 0.86864 0.87071 0.86928 0.86412 0.87207 0.89074 0.87733 0.87630 0.74831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 8.79 37.16 0.33 -1.34 16 2 C 0.14 1.63 1.13 -132.05 -0.15 1.49 16 3 C 0.51 7.68 6.74 -10.99 -0.07 7.61 16 4 O -0.54 -9.67 15.69 5.55 0.09 -9.58 16 5 N -0.69 -10.54 5.30 -60.29 -0.32 -10.86 16 6 C 0.11 1.89 3.89 -4.04 -0.02 1.87 16 7 C 0.20 3.36 3.26 -69.08 -0.22 3.13 16 8 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 9 N -0.74 -14.44 3.64 -54.55 -0.20 -14.64 16 10 C -0.24 -5.87 9.05 -15.06 -0.14 -6.01 16 11 H 0.09 2.55 7.19 -52.49 -0.38 2.18 16 12 C 0.01 0.34 5.50 -17.43 -0.10 0.25 16 13 N -0.93 -27.10 13.97 55.49 0.78 -26.33 16 14 Si 0.88 19.87 27.68 -169.99 -4.70 15.17 16 15 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 16 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 17 H -0.28 -5.83 6.62 56.52 0.37 -5.45 16 18 C -0.08 -1.33 5.16 -104.63 -0.54 -1.87 16 19 C -0.07 -1.32 8.96 -39.58 -0.35 -1.68 16 20 C -0.13 -2.06 10.05 -39.58 -0.40 -2.46 16 21 C -0.13 -1.94 10.05 -39.58 -0.40 -2.34 16 22 C -0.13 -1.90 10.05 -39.58 -0.40 -2.30 16 23 C -0.12 -1.95 9.14 -39.58 -0.36 -2.31 16 24 C -0.11 -1.09 6.15 -25.10 -0.15 -1.24 16 25 C -0.16 -1.52 6.85 -26.74 -0.18 -1.71 16 26 C 0.52 6.59 8.43 -10.86 -0.09 6.50 16 27 O -0.53 -8.72 18.03 5.56 0.10 -8.62 16 28 N -0.72 -8.04 4.91 -47.68 -0.23 -8.28 16 29 H 0.08 0.95 8.14 -51.92 -0.42 0.53 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 32 H 0.40 5.67 7.43 -40.82 -0.30 5.37 16 33 H 0.06 0.91 6.86 -51.93 -0.36 0.55 16 34 H 0.08 1.54 7.20 -51.93 -0.37 1.16 16 35 H 0.36 6.94 5.98 -40.82 -0.24 6.69 16 36 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 37 H 0.12 2.35 7.52 -52.48 -0.39 1.96 16 38 H 0.11 1.61 8.06 -52.48 -0.42 1.18 16 39 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 40 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 41 H 0.12 1.68 6.21 -52.48 -0.33 1.35 16 42 H 0.11 1.14 6.91 -51.93 -0.36 0.78 16 43 H 0.09 0.67 7.92 -51.93 -0.41 0.26 16 44 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 45 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 46 H 0.41 4.30 8.76 -40.82 -0.36 3.94 16 LS Contribution 376.54 15.07 5.67 5.67 Total: -1.00 -32.19 376.54 -8.54 -40.73 By element: Atomic # 1 Polarization: 25.62 SS G_CDS: -6.47 Total: 19.15 kcal Atomic # 6 Polarization: 0.84 SS G_CDS: -3.25 Total: -2.41 kcal Atomic # 7 Polarization: -60.13 SS G_CDS: 0.02 Total: -60.11 kcal Atomic # 8 Polarization: -18.39 SS G_CDS: 0.19 Total: -18.20 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -4.70 Total: 15.17 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.19 -8.54 -40.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732020795.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.483 kcal (2) G-P(sol) polarization free energy of solvation -32.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds