Wall clock time and date at job start Tue Mar 31 2020 17:16:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50704 * 110.21608 * 2 1 4 4 O 1.21285 * 120.00072 * 94.52239 * 3 2 1 5 5 N 1.34772 * 120.00138 * 274.52662 * 3 2 1 6 6 C 1.46497 * 120.00143 * 179.97438 * 5 3 2 7 7 C 1.53005 * 109.47517 * 179.97438 * 6 5 3 8 8 H 1.08996 * 109.46857 * 295.00564 * 7 6 5 9 9 N 1.46502 * 109.46934 * 54.99711 * 7 6 5 10 10 C 1.36946 * 119.99843 * 57.00493 * 9 7 6 11 11 H 1.07996 * 119.99576 * 353.93165 * 10 9 7 12 12 C 1.38809 * 119.99974 * 173.64990 * 10 9 7 13 13 N 1.31617 * 119.99710 * 179.97438 * 12 10 9 14 14 Si 1.86803 * 120.00035 * 0.02562 * 12 10 9 15 15 H 1.48502 * 109.47050 * 89.99267 * 14 12 10 16 16 H 1.48499 * 109.46876 * 209.99772 * 14 12 10 17 17 H 1.48498 * 109.47014 * 329.99463 * 14 12 10 18 18 C 1.50692 * 109.47338 * 174.99951 * 7 6 5 19 19 C 1.38237 * 120.00048 * 206.23584 * 18 7 6 20 20 C 1.38232 * 120.00195 * 179.78659 * 19 18 7 21 21 C 1.38242 * 119.99781 * 0.44255 * 20 19 18 22 22 C 1.38232 * 119.99936 * 359.81523 * 21 20 19 23 23 C 1.38234 * 120.00231 * 26.51214 * 18 7 6 24 24 C 1.54474 * 110.31960 * 121.97849 * 2 1 3 25 25 C 1.54629 * 101.76744 * 144.45626 * 24 2 1 26 26 C 1.51284 * 104.19177 * 335.20487 * 25 24 2 27 27 O 1.21281 * 124.94071 * 196.23045 * 26 25 24 28 28 N 1.34419 * 110.12004 * 16.25092 * 26 25 24 29 29 H 1.09012 * 109.47318 * 59.29898 * 1 2 3 30 30 H 1.09003 * 109.47609 * 179.29522 * 1 2 3 31 31 H 1.08996 * 109.47520 * 299.29770 * 1 2 3 32 32 H 0.97002 * 120.00132 * 359.97438 * 5 3 2 33 33 H 1.08994 * 109.47251 * 59.99669 * 6 5 3 34 34 H 1.08999 * 109.47181 * 299.99811 * 6 5 3 35 35 H 0.96990 * 120.00474 * 237.00711 * 9 7 6 36 36 H 0.97000 * 119.99395 * 180.02562 * 13 12 10 37 37 H 1.08003 * 120.00011 * 359.97438 * 19 18 7 38 38 H 1.08003 * 120.00487 * 180.27472 * 20 19 18 39 39 H 1.08002 * 119.99445 * 179.83044 * 21 20 19 40 40 H 1.07999 * 119.99844 * 179.97438 * 22 21 20 41 41 H 1.08006 * 119.99992 * 359.97438 * 23 18 7 42 42 H 1.09000 * 110.96903 * 262.57483 * 24 2 1 43 43 H 1.09001 * 110.96839 * 26.33511 * 24 2 1 44 44 H 1.08997 * 110.48597 * 216.52779 * 25 24 2 45 45 H 1.09002 * 110.48589 * 93.88007 * 25 24 2 46 46 H 0.96994 * 124.35057 * 180.43320 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0507 1.4142 0.0000 4 8 2.3380 1.9547 1.0471 5 7 2.1972 2.0784 -1.1635 6 6 2.7029 3.4533 -1.1635 7 6 2.7730 3.9711 -2.6015 8 1 3.5091 3.3931 -3.1602 9 7 1.4596 3.8318 -3.2353 10 6 0.3608 4.4231 -2.6709 11 1 0.4428 4.9084 -1.7097 12 6 -0.8568 4.4038 -3.3371 13 7 -1.9129 4.9717 -2.7944 14 14 -0.9969 3.5705 -5.0031 15 1 -1.3598 2.1431 -4.8137 16 1 -2.0467 4.2458 -5.8075 17 1 0.3046 3.6604 -5.7125 18 6 3.1755 5.4233 -2.5935 19 6 2.8014 6.2499 -3.6365 20 6 3.1668 7.5830 -3.6270 21 6 3.9141 8.0875 -2.5791 22 6 4.2926 7.2596 -1.5388 23 6 3.9235 5.9275 -1.5461 24 6 2.0664 -0.7672 1.2288 25 6 3.3310 -1.4437 0.6508 26 6 3.0535 -1.5422 -0.8332 27 8 3.6596 -2.2521 -1.6075 28 7 2.0379 -0.7282 -1.1687 29 1 -0.3634 0.5247 -0.8837 30 1 -0.3634 -1.0276 -0.0126 31 1 -0.3634 0.5029 0.8962 32 1 1.9677 1.6461 -2.0010 33 1 3.6988 3.4741 -0.7212 34 1 2.0335 4.0866 -0.5812 35 1 1.3681 3.3207 -4.0546 36 1 -2.7638 4.9578 -3.2598 37 1 2.2212 5.8549 -4.4573 38 1 2.8709 8.2299 -4.4397 39 1 4.2018 9.1284 -2.5731 40 1 4.8767 7.6536 -0.7203 41 1 4.2192 5.2807 -0.7332 42 1 2.3252 -0.0806 2.0348 43 1 1.3464 -1.5117 1.5686 44 1 3.4629 -2.4365 1.0809 45 1 4.2110 -0.8274 0.8342 46 1 1.6857 -0.6344 -2.0675 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732020795.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:16:37 Heat of formation + Delta-G solvation = -50.304180 kcal Electronic energy + Delta-G solvation = -29109.217818 eV Core-core repulsion = 25191.038783 eV Total energy + Delta-G solvation = -3918.179035 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.14514 -40.54043 -39.87687 -37.78595 -37.32910 -35.21709 -33.76673 -32.27083 -32.06230 -31.81639 -31.39999 -28.94233 -26.37782 -25.73525 -24.26732 -23.42427 -22.82752 -21.77759 -21.27993 -20.85151 -20.00187 -19.19342 -17.90867 -17.78115 -16.86343 -16.76092 -16.58018 -16.32090 -15.97394 -15.70291 -15.57325 -15.31014 -14.94657 -14.81371 -14.71618 -14.39490 -14.18016 -14.01607 -13.79466 -13.57409 -13.53563 -13.38829 -13.22415 -13.20938 -12.87242 -12.47422 -12.21533 -12.10444 -12.01116 -11.86857 -11.80234 -11.60591 -11.46022 -11.02681 -10.99189 -10.15300 -9.99758 -9.67184 -9.58092 -9.26616 -7.94980 -5.32371 0.58692 0.66179 1.39530 1.42981 1.44611 1.49177 1.50660 2.19601 2.24585 2.51341 2.99886 3.21688 3.34090 3.47275 3.56072 3.65550 3.84450 3.97664 4.08735 4.13766 4.22940 4.29143 4.35253 4.36543 4.44163 4.60591 4.63554 4.74202 4.80066 4.82609 4.88567 5.00903 5.06632 5.08811 5.14899 5.22924 5.29107 5.45256 5.62676 5.69962 5.73799 5.79953 5.88995 5.93347 6.25870 6.26631 6.54877 7.11292 7.11411 7.19269 7.80434 8.02570 9.26280 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.010361 B = 0.004390 C = 0.003567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2701.763931 B = 6376.647355 C = 7847.151078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.148 3.852 3 C 0.504 3.496 4 O -0.572 6.572 5 N -0.695 5.695 6 C 0.125 3.875 7 C 0.204 3.796 8 H 0.104 0.896 9 N -0.735 5.735 10 C -0.197 4.197 11 H 0.049 0.951 12 C -0.056 4.056 13 N -0.983 5.983 14 Si 0.943 3.057 15 H -0.276 1.276 16 H -0.311 1.311 17 H -0.249 1.249 18 C -0.096 4.096 19 C -0.101 4.101 20 C -0.139 4.139 21 C -0.131 4.131 22 C -0.130 4.130 23 C -0.132 4.132 24 C -0.107 4.107 25 C -0.151 4.151 26 C 0.521 3.479 27 O -0.575 6.575 28 N -0.712 5.712 29 H 0.056 0.944 30 H 0.101 0.899 31 H 0.078 0.922 32 H 0.405 0.595 33 H 0.076 0.924 34 H 0.037 0.963 35 H 0.371 0.629 36 H 0.253 0.747 37 H 0.107 0.893 38 H 0.128 0.872 39 H 0.142 0.858 40 H 0.142 0.858 41 H 0.130 0.870 42 H 0.103 0.897 43 H 0.120 0.880 44 H 0.129 0.871 45 H 0.107 0.893 46 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.234 -8.013 4.373 14.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.058 3.942 3 C 0.289 3.711 4 O -0.451 6.451 5 N -0.344 5.344 6 C 0.000 4.000 7 C 0.095 3.905 8 H 0.122 0.878 9 N -0.377 5.377 10 C -0.328 4.328 11 H 0.067 0.933 12 C -0.247 4.247 13 N -0.634 5.634 14 Si 0.772 3.228 15 H -0.202 1.202 16 H -0.239 1.239 17 H -0.173 1.173 18 C -0.098 4.098 19 C -0.119 4.119 20 C -0.157 4.157 21 C -0.149 4.149 22 C -0.148 4.148 23 C -0.151 4.151 24 C -0.145 4.145 25 C -0.191 4.191 26 C 0.309 3.691 27 O -0.454 6.454 28 N -0.368 5.368 29 H 0.075 0.925 30 H 0.120 0.880 31 H 0.097 0.903 32 H 0.240 0.760 33 H 0.094 0.906 34 H 0.055 0.945 35 H 0.205 0.795 36 H 0.062 0.938 37 H 0.125 0.875 38 H 0.146 0.854 39 H 0.159 0.841 40 H 0.160 0.840 41 H 0.147 0.853 42 H 0.121 0.879 43 H 0.139 0.861 44 H 0.147 0.853 45 H 0.125 0.875 46 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 11.679 -7.874 4.939 14.926 hybrid contribution -1.278 0.113 -1.973 2.354 sum 10.401 -7.761 2.966 13.312 Atomic orbital electron populations 1.22054 0.89898 1.04963 1.03768 1.21253 0.97007 0.87564 0.88366 1.21185 0.77398 0.89011 0.83509 1.90664 1.52015 1.70226 1.32214 1.45694 1.64862 1.14605 1.09221 1.21643 0.97997 0.82188 0.98215 1.19495 0.87061 0.91655 0.92318 0.87845 1.42626 1.03372 1.62553 1.29114 1.18586 0.87009 1.26624 1.00621 0.93347 1.25358 0.95707 1.02008 1.01630 1.69894 1.00989 1.51520 1.40990 0.85603 0.77782 0.78319 0.81115 1.20164 1.23939 1.17305 1.20543 0.97137 0.97314 0.94834 1.20974 0.98004 0.94121 0.98817 1.21368 0.99180 0.95332 0.99800 1.21376 0.98711 1.00619 0.94233 1.21380 1.00672 0.93564 0.99151 1.21295 0.99168 0.96571 0.98048 1.22716 0.96945 0.99760 0.95104 1.22435 1.00323 1.05439 0.90881 1.21365 0.78156 0.77421 0.92128 1.90740 1.53168 1.42660 1.58856 1.46368 1.35994 1.43102 1.11355 0.92465 0.88023 0.90296 0.75965 0.90645 0.94483 0.79548 0.93799 0.87491 0.85428 0.84069 0.83991 0.85268 0.87880 0.86133 0.85310 0.87489 0.74523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.03 8.79 71.98 0.63 -2.40 16 2 C 0.15 3.18 1.13 3.31 0.00 3.18 16 3 C 0.50 14.90 6.74 87.66 0.59 15.49 16 4 O -0.57 -20.31 15.69 -3.04 -0.05 -20.36 16 5 N -0.69 -20.85 5.30 -463.06 -2.45 -23.30 16 6 C 0.13 4.13 3.89 86.38 0.34 4.47 16 7 C 0.20 6.63 3.26 44.24 0.14 6.77 16 8 H 0.10 2.78 8.14 -2.39 -0.02 2.76 16 9 N -0.73 -28.46 3.64 -326.50 -1.19 -29.65 16 10 C -0.20 -9.90 9.05 84.03 0.76 -9.14 16 11 H 0.05 2.85 7.19 -2.91 -0.02 2.83 16 12 C -0.06 -3.01 5.50 84.86 0.47 -2.54 16 13 N -0.98 -59.98 13.97 21.65 0.30 -59.68 16 14 Si 0.94 41.46 27.68 68.60 1.90 43.36 16 15 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16 16 H -0.31 -14.71 7.11 99.48 0.71 -14.01 16 17 H -0.25 -9.66 6.62 99.48 0.66 -9.01 16 18 C -0.10 -3.26 5.16 -19.87 -0.10 -3.36 16 19 C -0.10 -3.60 8.96 22.27 0.20 -3.40 16 20 C -0.14 -4.34 10.05 22.27 0.22 -4.12 16 21 C -0.13 -3.60 10.05 22.27 0.22 -3.37 16 22 C -0.13 -3.53 10.05 22.27 0.22 -3.31 16 23 C -0.13 -4.02 9.14 22.27 0.20 -3.82 16 24 C -0.11 -1.76 6.15 31.65 0.19 -1.56 16 25 C -0.15 -2.52 6.85 30.59 0.21 -2.31 16 26 C 0.52 12.16 8.43 87.90 0.74 12.90 16 27 O -0.57 -18.06 18.03 -3.03 -0.05 -18.12 16 28 N -0.71 -14.68 4.91 -423.36 -2.08 -16.76 16 29 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 30 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.40 11.14 7.43 -92.71 -0.69 10.45 16 33 H 0.08 2.24 6.86 -2.39 -0.02 2.23 16 34 H 0.04 1.53 7.20 -2.39 -0.02 1.51 16 35 H 0.37 13.56 5.98 -92.72 -0.55 13.01 16 36 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 37 H 0.11 4.10 7.52 -2.91 -0.02 4.08 16 38 H 0.13 3.49 8.06 -2.91 -0.02 3.47 16 39 H 0.14 2.97 8.06 -2.91 -0.02 2.95 16 40 H 0.14 2.99 8.06 -2.91 -0.02 2.96 16 41 H 0.13 3.53 6.21 -2.91 -0.02 3.51 16 42 H 0.10 1.93 6.91 -2.39 -0.02 1.91 16 43 H 0.12 1.31 7.92 -2.39 -0.02 1.29 16 44 H 0.13 1.57 8.14 -2.39 -0.02 1.55 16 45 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 46 H 0.41 8.02 8.76 -92.71 -0.81 7.21 16 Total: -1.00 -73.07 376.54 0.36 -72.70 By element: Atomic # 1 Polarization: 49.40 SS G_CDS: -1.07 Total: 48.33 kcal Atomic # 6 Polarization: -1.58 SS G_CDS: 5.05 Total: 3.48 kcal Atomic # 7 Polarization: -123.98 SS G_CDS: -5.42 Total: -129.39 kcal Atomic # 8 Polarization: -38.38 SS G_CDS: -0.10 Total: -38.48 kcal Atomic # 14 Polarization: 41.46 SS G_CDS: 1.90 Total: 43.36 kcal Total: -73.07 0.36 -72.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732020795.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.400 kcal (2) G-P(sol) polarization free energy of solvation -73.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds