Wall clock time and date at job start Tue Mar 31 2020 17:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50703 * 110.43112 * 2 1 4 4 O 1.21287 * 119.99856 * 239.29982 * 3 2 1 5 5 N 1.34778 * 120.00071 * 59.30432 * 3 2 1 6 6 C 1.46500 * 119.99666 * 179.97438 * 5 3 2 7 7 C 1.52998 * 109.46772 * 179.97438 * 6 5 3 8 8 H 1.09005 * 109.46925 * 65.00591 * 7 6 5 9 9 N 1.46498 * 109.47445 * 305.00331 * 7 6 5 10 10 C 1.36941 * 120.00019 * 155.00169 * 9 7 6 11 11 H 1.08003 * 120.00242 * 359.97438 * 10 9 7 12 12 C 1.38810 * 119.99879 * 180.02562 * 10 9 7 13 13 N 1.31620 * 120.00106 * 359.97438 * 12 10 9 14 14 Si 1.86805 * 120.00152 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.47013 * 89.99546 * 14 12 10 16 16 H 1.48494 * 109.47370 * 210.00000 * 14 12 10 17 17 H 1.48507 * 109.46663 * 330.00050 * 14 12 10 18 18 C 1.50703 * 109.47403 * 184.99776 * 7 6 5 19 19 C 1.38234 * 120.00257 * 260.00838 * 18 7 6 20 20 C 1.38238 * 119.99675 * 180.27927 * 19 18 7 21 21 C 1.38228 * 120.00120 * 359.47825 * 20 19 18 22 22 C 1.38234 * 120.00000 * 0.52176 * 21 20 19 23 23 C 1.38234 * 119.99503 * 80.02438 * 18 7 6 24 24 C 1.54626 * 110.48645 * 237.46051 * 2 1 3 25 25 C 1.54830 * 101.60702 * 216.42871 * 24 2 1 26 26 N 1.46760 * 105.49303 * 25.42767 * 25 24 2 27 27 C 1.34423 * 111.30275 * 342.96722 * 26 25 24 28 28 O 1.21273 * 124.94226 * 180.36763 * 27 26 25 29 29 H 1.08998 * 109.47588 * 60.69960 * 1 2 3 30 30 H 1.09003 * 109.47051 * 180.70196 * 1 2 3 31 31 H 1.09006 * 109.47384 * 300.69843 * 1 2 3 32 32 H 0.96992 * 119.99893 * 359.97438 * 5 3 2 33 33 H 1.08998 * 109.47324 * 60.00232 * 6 5 3 34 34 H 1.08996 * 109.47624 * 299.99634 * 6 5 3 35 35 H 0.97003 * 120.00032 * 334.99708 * 9 7 6 36 36 H 0.96997 * 120.00233 * 180.02562 * 13 12 10 37 37 H 1.08002 * 119.99744 * 359.97438 * 19 18 7 38 38 H 1.08004 * 119.99577 * 179.72816 * 20 19 18 39 39 H 1.07999 * 119.99932 * 180.24104 * 21 20 19 40 40 H 1.08001 * 120.00310 * 179.72161 * 22 21 20 41 41 H 1.07997 * 120.00460 * 0.02562 * 23 18 7 42 42 H 1.08998 * 110.96812 * 334.51044 * 24 2 1 43 43 H 1.09005 * 110.96771 * 98.26653 * 24 2 1 44 44 H 1.09003 * 110.24846 * 266.41486 * 25 24 2 45 45 H 1.08990 * 110.22100 * 144.43180 * 25 24 2 46 46 H 0.97001 * 124.34993 * 162.94219 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0560 1.4122 0.0000 4 8 2.7703 1.7933 -0.9032 5 7 1.7329 2.2517 1.0037 6 6 2.2448 3.6244 1.0039 7 6 1.7322 4.3596 2.2438 8 1 2.1483 3.8966 3.1387 9 7 0.2700 4.2814 2.2884 10 6 -0.3853 4.3884 3.4860 11 1 0.1759 4.5300 4.3979 12 6 -1.7707 4.3137 3.5282 13 7 -2.4546 4.1406 2.4171 14 14 -2.6646 4.4589 5.1621 15 1 -2.9812 5.8852 5.4280 16 1 -3.9239 3.6739 5.1089 17 1 -1.7990 3.9332 6.2483 18 6 2.1564 5.8044 2.1825 19 6 3.2526 6.2343 2.9067 20 6 3.6381 7.5608 2.8549 21 6 2.9340 8.4551 2.0704 22 6 1.8379 8.0251 1.3462 23 6 1.4491 6.6998 1.4022 24 6 2.0711 -0.7791 -1.2211 25 6 3.3233 -1.4656 -0.6226 26 7 3.0583 -1.5785 0.8164 27 6 2.0595 -0.7622 1.1946 28 8 1.6430 -0.6533 2.3284 29 1 -0.3634 0.5029 -0.8961 30 1 -0.3633 -1.0276 0.0126 31 1 -0.3634 0.5247 0.8837 32 1 1.1615 1.9471 1.7258 33 1 1.9007 4.1407 0.1077 34 1 3.3346 3.6058 1.0167 35 1 -0.2340 4.1539 1.4694 36 1 -3.4228 4.0889 2.4465 37 1 3.8048 5.5348 3.5168 38 1 4.4919 7.8976 3.4241 39 1 3.2376 9.4906 2.0269 40 1 1.2850 8.7247 0.7368 41 1 0.5923 6.3640 0.8369 42 1 1.3470 -1.5178 -1.5646 43 1 2.3447 -0.0989 -2.0277 44 1 4.2083 -0.8535 -0.7963 45 1 3.4560 -2.4548 -1.0605 46 1 3.5416 -2.1668 1.4174 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753302354.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:20:29 Heat of formation + Delta-G solvation = -34.745810 kcal Electronic energy + Delta-G solvation = -28918.169450 eV Core-core repulsion = 25000.665076 eV Total energy + Delta-G solvation = -3917.504374 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.15363 -39.09101 -38.50333 -36.48966 -35.77063 -33.71697 -33.09224 -31.88973 -30.40208 -29.54344 -28.91587 -27.44043 -25.48030 -23.94975 -23.03086 -22.13672 -21.89012 -21.39798 -20.01020 -19.15926 -17.65375 -17.35832 -17.18915 -16.36247 -15.73387 -15.45067 -15.25268 -14.85596 -14.66159 -14.44603 -14.13487 -13.91203 -13.75387 -13.67323 -13.25539 -13.03136 -12.85787 -12.78742 -12.67209 -12.37415 -12.24607 -12.15451 -11.96075 -11.48642 -11.20581 -11.07225 -10.92218 -10.80572 -10.69830 -10.45070 -10.11134 -9.96562 -9.77217 -9.57750 -9.24913 -9.04114 -8.70708 -8.39818 -8.17908 -7.09777 -5.82973 -3.13851 1.87048 1.93714 2.35647 2.76731 3.20072 3.42333 3.48639 3.49317 3.52406 4.15169 4.28322 4.31462 4.54773 4.63303 4.89908 4.98099 5.21596 5.25510 5.33240 5.35496 5.42461 5.49794 5.57005 5.60949 5.68563 5.69214 5.78033 5.81113 5.87721 5.92487 6.04936 6.10505 6.25315 6.27203 6.42389 6.49576 6.60893 6.64546 6.76753 6.82917 6.94458 7.02951 7.29918 7.53821 7.68251 7.83720 8.12179 8.33026 8.43021 9.46538 9.95128 10.32087 11.38550 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.009375 B = 0.004364 C = 0.003327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2986.055855 B = 6414.216693 C = 8413.246665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.118 4.118 3 C 0.533 3.467 4 O -0.546 6.546 5 N -0.701 5.701 6 C 0.120 3.880 7 C 0.197 3.803 8 H 0.066 0.934 9 N -0.712 5.712 10 C -0.242 4.242 11 H 0.071 0.929 12 C -0.004 4.004 13 N -0.929 5.929 14 Si 0.905 3.095 15 H -0.290 1.290 16 H -0.291 1.291 17 H -0.281 1.281 18 C -0.080 4.080 19 C -0.120 4.120 20 C -0.130 4.130 21 C -0.135 4.135 22 C -0.128 4.128 23 C -0.083 4.083 24 C -0.117 4.117 25 C 0.101 3.899 26 N -0.731 5.731 27 C 0.530 3.470 28 O -0.509 6.509 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.081 0.919 32 H 0.417 0.583 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.387 0.613 36 H 0.256 0.744 37 H 0.114 0.886 38 H 0.112 0.888 39 H 0.111 0.889 40 H 0.113 0.887 41 H 0.123 0.877 42 H 0.089 0.911 43 H 0.109 0.891 44 H 0.076 0.924 45 H 0.081 0.919 46 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.968 -7.098 -7.540 15.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.124 4.124 3 C 0.316 3.684 4 O -0.424 6.424 5 N -0.352 5.352 6 C -0.004 4.004 7 C 0.086 3.914 8 H 0.083 0.917 9 N -0.353 5.353 10 C -0.372 4.372 11 H 0.089 0.911 12 C -0.201 4.201 13 N -0.576 5.576 14 Si 0.736 3.264 15 H -0.218 1.218 16 H -0.218 1.218 17 H -0.207 1.207 18 C -0.084 4.084 19 C -0.139 4.139 20 C -0.148 4.148 21 C -0.153 4.153 22 C -0.146 4.146 23 C -0.101 4.101 24 C -0.155 4.155 25 C -0.024 4.024 26 N -0.388 5.388 27 C 0.314 3.686 28 O -0.383 6.383 29 H 0.093 0.907 30 H 0.086 0.914 31 H 0.100 0.900 32 H 0.256 0.744 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.221 0.779 36 H 0.066 0.934 37 H 0.132 0.868 38 H 0.130 0.870 39 H 0.129 0.871 40 H 0.131 0.869 41 H 0.141 0.859 42 H 0.107 0.893 43 H 0.127 0.873 44 H 0.094 0.906 45 H 0.099 0.901 46 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 12.086 -6.689 -7.441 15.691 hybrid contribution -0.812 -0.158 1.291 1.533 sum 11.274 -6.848 -6.151 14.554 Atomic orbital electron populations 1.21705 0.89124 1.03370 1.04639 1.21611 0.99954 0.94251 0.96630 1.19608 0.80537 0.85936 0.82282 1.90655 1.38120 1.77297 1.36345 1.45978 1.51252 1.12319 1.25689 1.21626 0.98145 0.81238 0.99389 1.19480 0.87188 0.89318 0.95419 0.91654 1.42420 0.98518 1.86389 1.07956 1.19179 0.89353 1.42455 0.86253 0.91120 1.24692 0.96278 1.02257 0.96872 1.69647 1.06334 1.56286 1.25355 0.86226 0.79334 0.77442 0.83395 1.21770 1.21769 1.20685 1.20976 0.93729 0.98463 0.95241 1.21016 0.97229 0.95677 1.00003 1.20977 1.00124 0.93795 0.99888 1.20975 0.96804 0.98943 0.98560 1.21103 0.97205 0.96119 1.00148 1.21003 0.98539 0.92619 0.97963 1.22756 0.96460 0.99280 0.96991 1.22168 0.98900 1.01396 0.79911 1.46148 1.37342 1.44286 1.10998 1.20385 0.79592 0.79643 0.88987 1.90820 1.60665 1.65680 1.21149 0.90748 0.91382 0.89961 0.74442 0.91334 0.91520 0.77873 0.93439 0.86785 0.87019 0.87106 0.86864 0.85887 0.89282 0.87270 0.90603 0.90068 0.75016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.73 8.31 37.16 0.31 -1.42 16 2 C -0.12 -1.57 0.74 -155.68 -0.12 -1.69 16 3 C 0.53 8.65 6.55 -10.98 -0.07 8.57 16 4 O -0.55 -9.70 15.46 5.55 0.09 -9.61 16 5 N -0.70 -12.12 5.25 -60.29 -0.32 -12.44 16 6 C 0.12 2.08 5.21 -4.04 -0.02 2.06 16 7 C 0.20 3.75 2.64 -69.08 -0.18 3.57 16 8 H 0.07 1.27 7.94 -51.93 -0.41 0.86 16 9 N -0.71 -16.33 3.80 -54.55 -0.21 -16.54 16 10 C -0.24 -6.35 9.92 -15.06 -0.15 -6.50 16 11 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 12 C 0.00 -0.12 5.50 -17.43 -0.10 -0.22 16 13 N -0.93 -26.59 13.06 55.49 0.72 -25.86 16 14 Si 0.91 22.12 29.55 -169.99 -5.02 17.10 16 15 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 16 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 17 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 18 C -0.08 -1.47 4.92 -104.62 -0.51 -1.98 16 19 C -0.12 -1.97 9.67 -39.58 -0.38 -2.35 16 20 C -0.13 -1.93 10.05 -39.58 -0.40 -2.33 16 21 C -0.13 -2.00 10.05 -39.59 -0.40 -2.40 16 22 C -0.13 -2.08 10.05 -39.58 -0.40 -2.47 16 23 C -0.08 -1.53 9.32 -39.58 -0.37 -1.90 16 24 C -0.12 -1.14 6.06 -24.91 -0.15 -1.29 16 25 C 0.10 0.84 7.79 -2.94 -0.02 0.81 16 26 N -0.73 -7.61 6.24 -59.02 -0.37 -7.98 16 27 C 0.53 7.59 7.13 -10.86 -0.08 7.51 16 28 O -0.51 -9.25 17.83 5.56 0.10 -9.15 16 29 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.08 1.32 7.59 -51.93 -0.39 0.92 16 32 H 0.42 7.87 7.54 -40.82 -0.31 7.56 16 33 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.39 9.47 7.80 -40.82 -0.32 9.15 16 36 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 37 H 0.11 1.66 8.04 -52.49 -0.42 1.24 16 38 H 0.11 1.37 8.06 -52.48 -0.42 0.94 16 39 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 40 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 41 H 0.12 2.42 7.72 -52.49 -0.41 2.02 16 42 H 0.09 0.68 7.91 -51.93 -0.41 0.27 16 43 H 0.11 1.14 6.94 -51.93 -0.36 0.78 16 44 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 46 H 0.41 3.47 8.96 -40.82 -0.37 3.10 16 LS Contribution 386.03 15.07 5.82 5.82 Total: -1.00 -31.82 386.03 -8.98 -40.80 By element: Atomic # 1 Polarization: 26.66 SS G_CDS: -6.75 Total: 19.91 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: -3.04 Total: -2.04 kcal Atomic # 7 Polarization: -62.65 SS G_CDS: -0.17 Total: -62.82 kcal Atomic # 8 Polarization: -18.95 SS G_CDS: 0.19 Total: -18.76 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -31.82 -8.98 -40.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753302354.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.049 kcal (2) G-P(sol) polarization free energy of solvation -31.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds