Wall clock time and date at job start Tue Mar 31 2020 17:20:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50703 * 110.43112 * 2 1 4 4 O 1.21287 * 119.99856 * 239.29982 * 3 2 1 5 5 N 1.34778 * 120.00071 * 59.30432 * 3 2 1 6 6 C 1.46500 * 119.99666 * 179.97438 * 5 3 2 7 7 C 1.52998 * 109.46772 * 179.97438 * 6 5 3 8 8 H 1.09005 * 109.46925 * 65.00591 * 7 6 5 9 9 N 1.46498 * 109.47445 * 305.00331 * 7 6 5 10 10 C 1.36941 * 120.00019 * 155.00169 * 9 7 6 11 11 H 1.08003 * 120.00242 * 359.97438 * 10 9 7 12 12 C 1.38810 * 119.99879 * 180.02562 * 10 9 7 13 13 N 1.31620 * 120.00106 * 359.97438 * 12 10 9 14 14 Si 1.86805 * 120.00152 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.47013 * 89.99546 * 14 12 10 16 16 H 1.48494 * 109.47370 * 210.00000 * 14 12 10 17 17 H 1.48507 * 109.46663 * 330.00050 * 14 12 10 18 18 C 1.50703 * 109.47403 * 184.99776 * 7 6 5 19 19 C 1.38234 * 120.00257 * 260.00838 * 18 7 6 20 20 C 1.38238 * 119.99675 * 180.27927 * 19 18 7 21 21 C 1.38228 * 120.00120 * 359.47825 * 20 19 18 22 22 C 1.38234 * 120.00000 * 0.52176 * 21 20 19 23 23 C 1.38234 * 119.99503 * 80.02438 * 18 7 6 24 24 C 1.54626 * 110.48645 * 237.46051 * 2 1 3 25 25 C 1.54830 * 101.60702 * 216.42871 * 24 2 1 26 26 N 1.46760 * 105.49303 * 25.42767 * 25 24 2 27 27 C 1.34423 * 111.30275 * 342.96722 * 26 25 24 28 28 O 1.21273 * 124.94226 * 180.36763 * 27 26 25 29 29 H 1.08998 * 109.47588 * 60.69960 * 1 2 3 30 30 H 1.09003 * 109.47051 * 180.70196 * 1 2 3 31 31 H 1.09006 * 109.47384 * 300.69843 * 1 2 3 32 32 H 0.96992 * 119.99893 * 359.97438 * 5 3 2 33 33 H 1.08998 * 109.47324 * 60.00232 * 6 5 3 34 34 H 1.08996 * 109.47624 * 299.99634 * 6 5 3 35 35 H 0.97003 * 120.00032 * 334.99708 * 9 7 6 36 36 H 0.96997 * 120.00233 * 180.02562 * 13 12 10 37 37 H 1.08002 * 119.99744 * 359.97438 * 19 18 7 38 38 H 1.08004 * 119.99577 * 179.72816 * 20 19 18 39 39 H 1.07999 * 119.99932 * 180.24104 * 21 20 19 40 40 H 1.08001 * 120.00310 * 179.72161 * 22 21 20 41 41 H 1.07997 * 120.00460 * 0.02562 * 23 18 7 42 42 H 1.08998 * 110.96812 * 334.51044 * 24 2 1 43 43 H 1.09005 * 110.96771 * 98.26653 * 24 2 1 44 44 H 1.09003 * 110.24846 * 266.41486 * 25 24 2 45 45 H 1.08990 * 110.22100 * 144.43180 * 25 24 2 46 46 H 0.97001 * 124.34993 * 162.94219 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0560 1.4122 0.0000 4 8 2.7703 1.7933 -0.9032 5 7 1.7329 2.2517 1.0037 6 6 2.2448 3.6244 1.0039 7 6 1.7322 4.3596 2.2438 8 1 2.1483 3.8966 3.1387 9 7 0.2700 4.2814 2.2884 10 6 -0.3853 4.3884 3.4860 11 1 0.1759 4.5300 4.3979 12 6 -1.7707 4.3137 3.5282 13 7 -2.4546 4.1406 2.4171 14 14 -2.6646 4.4589 5.1621 15 1 -2.9812 5.8852 5.4280 16 1 -3.9239 3.6739 5.1089 17 1 -1.7990 3.9332 6.2483 18 6 2.1564 5.8044 2.1825 19 6 3.2526 6.2343 2.9067 20 6 3.6381 7.5608 2.8549 21 6 2.9340 8.4551 2.0704 22 6 1.8379 8.0251 1.3462 23 6 1.4491 6.6998 1.4022 24 6 2.0711 -0.7791 -1.2211 25 6 3.3233 -1.4656 -0.6226 26 7 3.0583 -1.5785 0.8164 27 6 2.0595 -0.7622 1.1946 28 8 1.6430 -0.6533 2.3284 29 1 -0.3634 0.5029 -0.8961 30 1 -0.3633 -1.0276 0.0126 31 1 -0.3634 0.5247 0.8837 32 1 1.1615 1.9471 1.7258 33 1 1.9007 4.1407 0.1077 34 1 3.3346 3.6058 1.0167 35 1 -0.2340 4.1539 1.4694 36 1 -3.4228 4.0889 2.4465 37 1 3.8048 5.5348 3.5168 38 1 4.4919 7.8976 3.4241 39 1 3.2376 9.4906 2.0269 40 1 1.2850 8.7247 0.7368 41 1 0.5923 6.3640 0.8369 42 1 1.3470 -1.5178 -1.5646 43 1 2.3447 -0.0989 -2.0277 44 1 4.2083 -0.8535 -0.7963 45 1 3.4560 -2.4548 -1.0605 46 1 3.5416 -2.1668 1.4174 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753302354.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:20:28 Heat of formation + Delta-G solvation = -57.248385 kcal Electronic energy + Delta-G solvation = -28919.145234 eV Core-core repulsion = 25000.665076 eV Total energy + Delta-G solvation = -3918.480159 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.26123 -40.42635 -39.78292 -37.69723 -37.17079 -35.28947 -34.32695 -33.47187 -31.71006 -31.19467 -29.86331 -28.87411 -26.57223 -25.71880 -24.48128 -23.31898 -22.99791 -22.55064 -21.45612 -20.40194 -19.32339 -18.60655 -18.34830 -17.71882 -17.07166 -16.91376 -16.51561 -16.16861 -16.02015 -15.76726 -15.58368 -15.21895 -15.04374 -14.78135 -14.69556 -14.50271 -14.17904 -14.08151 -13.84250 -13.55657 -13.43019 -13.39261 -13.23198 -12.92908 -12.80742 -12.48502 -12.30595 -12.17824 -12.13546 -12.02240 -11.85019 -11.64790 -11.19038 -11.00398 -10.80838 -10.14766 -10.11789 -9.68507 -9.53625 -9.03960 -7.93146 -5.22102 0.57655 0.64258 1.18139 1.46667 1.47281 1.52292 1.54939 2.16080 2.38394 2.55192 3.00991 3.18088 3.36506 3.40771 3.60562 3.75915 3.90175 4.00192 4.08065 4.14967 4.21022 4.32909 4.34530 4.40656 4.40897 4.63772 4.64299 4.69264 4.75332 4.78141 4.81756 4.99821 5.02261 5.10237 5.14945 5.20969 5.29863 5.38273 5.52944 5.68611 5.71766 5.72883 5.91446 5.93469 6.24673 6.27810 6.43383 7.04392 7.13665 7.35421 8.01607 8.29268 9.28873 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.009375 B = 0.004364 C = 0.003327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2986.055855 B = 6414.216693 C = 8413.246665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.118 4.118 3 C 0.529 3.471 4 O -0.561 6.561 5 N -0.708 5.708 6 C 0.131 3.869 7 C 0.202 3.798 8 H 0.060 0.940 9 N -0.716 5.716 10 C -0.233 4.233 11 H 0.069 0.931 12 C -0.060 4.060 13 N -0.960 5.960 14 Si 0.960 3.040 15 H -0.292 1.292 16 H -0.296 1.296 17 H -0.274 1.274 18 C -0.100 4.100 19 C -0.129 4.129 20 C -0.125 4.125 21 C -0.130 4.130 22 C -0.135 4.135 23 C -0.108 4.108 24 C -0.112 4.112 25 C 0.100 3.900 26 N -0.714 5.714 27 C 0.523 3.477 28 O -0.558 6.558 29 H 0.079 0.921 30 H 0.090 0.910 31 H 0.046 0.954 32 H 0.409 0.591 33 H 0.058 0.942 34 H 0.078 0.922 35 H 0.376 0.624 36 H 0.250 0.750 37 H 0.129 0.871 38 H 0.147 0.853 39 H 0.146 0.854 40 H 0.130 0.870 41 H 0.097 0.903 42 H 0.118 0.882 43 H 0.104 0.896 44 H 0.075 0.925 45 H 0.124 0.876 46 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.147 -7.282 -7.762 17.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.125 4.125 3 C 0.315 3.685 4 O -0.441 6.441 5 N -0.358 5.358 6 C 0.007 3.993 7 C 0.093 3.907 8 H 0.078 0.922 9 N -0.355 5.355 10 C -0.364 4.364 11 H 0.087 0.913 12 C -0.253 4.253 13 N -0.610 5.610 14 Si 0.791 3.209 15 H -0.219 1.219 16 H -0.223 1.223 17 H -0.199 1.199 18 C -0.103 4.103 19 C -0.147 4.147 20 C -0.143 4.143 21 C -0.148 4.148 22 C -0.153 4.153 23 C -0.126 4.126 24 C -0.149 4.149 25 C -0.023 4.023 26 N -0.370 5.370 27 C 0.307 3.693 28 O -0.436 6.436 29 H 0.098 0.902 30 H 0.109 0.891 31 H 0.065 0.935 32 H 0.246 0.754 33 H 0.076 0.924 34 H 0.097 0.903 35 H 0.209 0.791 36 H 0.059 0.941 37 H 0.147 0.853 38 H 0.164 0.836 39 H 0.163 0.837 40 H 0.148 0.852 41 H 0.115 0.885 42 H 0.136 0.864 43 H 0.122 0.878 44 H 0.093 0.907 45 H 0.142 0.858 46 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges 14.352 -6.890 -7.687 17.679 hybrid contribution -1.339 -0.055 1.308 1.873 sum 13.013 -6.945 -6.379 16.070 Atomic orbital electron populations 1.21669 0.89358 1.04313 1.03145 1.21665 0.99797 0.92596 0.98438 1.20129 0.79991 0.86969 0.81436 1.90636 1.38841 1.77981 1.36659 1.46067 1.51322 1.12474 1.25917 1.21480 0.98543 0.81206 0.98066 1.19516 0.84857 0.90477 0.95867 0.92204 1.42402 1.00127 1.86521 1.06493 1.19414 0.89586 1.40245 0.87200 0.91292 1.25323 0.97129 1.03486 0.99411 1.69779 1.05951 1.58348 1.26885 0.85340 0.78079 0.76975 0.80553 1.21903 1.22270 1.19924 1.20804 0.95295 0.97385 0.96821 1.21254 0.96697 0.97089 0.99682 1.21396 1.00669 0.92879 0.99342 1.21396 0.95571 1.00675 0.97109 1.21353 0.98009 0.95308 1.00602 1.20940 0.98553 0.94144 0.98993 1.22856 0.97644 0.99347 0.95076 1.22408 0.97957 1.03665 0.78298 1.46146 1.35674 1.42836 1.12321 1.20560 0.80243 0.80087 0.88390 1.90791 1.62501 1.67412 1.22923 0.90177 0.89147 0.93517 0.75412 0.92364 0.90336 0.79106 0.94110 0.85265 0.83563 0.83656 0.85222 0.88463 0.86387 0.87772 0.90659 0.85763 0.73731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.43 8.31 71.98 0.60 -2.83 16 2 C -0.12 -3.13 0.74 -52.94 -0.04 -3.16 16 3 C 0.53 17.50 6.55 87.66 0.57 18.07 16 4 O -0.56 -19.98 15.46 -3.05 -0.05 -20.03 16 5 N -0.71 -25.62 5.25 -463.06 -2.43 -28.05 16 6 C 0.13 4.72 5.21 86.38 0.45 5.17 16 7 C 0.20 7.98 2.64 44.25 0.12 8.09 16 8 H 0.06 2.40 7.94 -2.38 -0.02 2.39 16 9 N -0.72 -34.39 3.80 -326.49 -1.24 -35.63 16 10 C -0.23 -12.59 9.92 84.03 0.83 -11.75 16 11 H 0.07 3.70 7.83 -2.91 -0.02 3.67 16 12 C -0.06 -3.40 5.50 84.86 0.47 -2.94 16 13 N -0.96 -57.02 13.06 21.65 0.28 -56.74 16 14 Si 0.96 46.46 29.55 68.60 2.03 48.49 16 15 H -0.29 -14.03 7.11 99.48 0.71 -13.33 16 16 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 17 H -0.27 -12.77 7.11 99.48 0.71 -12.07 16 18 C -0.10 -3.69 4.92 -19.87 -0.10 -3.78 16 19 C -0.13 -4.03 9.67 22.27 0.22 -3.81 16 20 C -0.13 -3.34 10.05 22.27 0.22 -3.11 16 21 C -0.13 -3.47 10.05 22.27 0.22 -3.25 16 22 C -0.13 -4.25 10.05 22.27 0.22 -4.02 16 23 C -0.11 -4.08 9.32 22.27 0.21 -3.87 16 24 C -0.11 -1.92 6.06 31.77 0.19 -1.72 16 25 C 0.10 1.35 7.79 86.95 0.68 2.03 16 26 N -0.71 -13.51 6.24 -459.23 -2.87 -16.38 16 27 C 0.52 14.83 7.13 87.90 0.63 15.46 16 28 O -0.56 -20.89 17.83 -3.01 -0.05 -20.94 16 29 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.05 1.59 7.59 -2.38 -0.02 1.57 16 32 H 0.41 16.44 7.54 -92.71 -0.70 15.74 16 33 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 34 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 35 H 0.38 19.57 7.80 -92.71 -0.72 18.85 16 36 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 37 H 0.13 3.56 8.04 -2.91 -0.02 3.54 16 38 H 0.15 2.90 8.06 -2.91 -0.02 2.88 16 39 H 0.15 2.89 8.06 -2.91 -0.02 2.87 16 40 H 0.13 3.54 8.06 -2.91 -0.02 3.52 16 41 H 0.10 4.10 7.72 -2.91 -0.02 4.07 16 42 H 0.12 1.37 7.91 -2.39 -0.02 1.35 16 43 H 0.10 1.97 6.94 -2.38 -0.02 1.96 16 44 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 45 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 46 H 0.42 6.27 8.96 -92.71 -0.83 5.44 16 Total: -1.00 -71.61 386.03 -0.06 -71.68 By element: Atomic # 1 Polarization: 54.25 SS G_CDS: -1.23 Total: 53.02 kcal Atomic # 6 Polarization: -0.92 SS G_CDS: 5.49 Total: 4.57 kcal Atomic # 7 Polarization: -130.54 SS G_CDS: -6.25 Total: -136.79 kcal Atomic # 8 Polarization: -40.87 SS G_CDS: -0.10 Total: -40.97 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 2.03 Total: 48.49 kcal Total: -71.61 -0.06 -71.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753302354.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.430 kcal (2) G-P(sol) polarization free energy of solvation -71.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds