Wall clock time and date at job start Tue Mar 31 2020 17:20:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50703 * 110.43395 * 2 1 4 4 O 1.21278 * 119.99985 * 120.70565 * 3 2 1 5 5 N 1.34779 * 119.99944 * 300.70277 * 3 2 1 6 6 C 1.46499 * 119.99872 * 180.02562 * 5 3 2 7 7 C 1.53000 * 109.46840 * 180.02562 * 6 5 3 8 8 H 1.08991 * 109.47625 * 64.99762 * 7 6 5 9 9 N 1.46504 * 109.47054 * 304.99499 * 7 6 5 10 10 C 1.36929 * 119.99940 * 155.00291 * 9 7 6 11 11 H 1.08007 * 120.00260 * 359.97438 * 10 9 7 12 12 C 1.38808 * 120.00410 * 180.02562 * 10 9 7 13 13 N 1.31625 * 119.99828 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 120.00548 * 180.02562 * 12 10 9 15 15 H 1.48504 * 109.47186 * 59.99665 * 14 12 10 16 16 H 1.48502 * 109.47374 * 179.97438 * 14 12 10 17 17 H 1.48505 * 109.47097 * 300.00036 * 14 12 10 18 18 C 1.50703 * 109.46801 * 184.99719 * 7 6 5 19 19 C 1.38241 * 119.99868 * 79.72601 * 18 7 6 20 20 C 1.38229 * 119.99866 * 179.78587 * 19 18 7 21 21 C 1.38233 * 120.00168 * 0.44091 * 20 19 18 22 22 C 1.38242 * 119.99856 * 359.81074 * 21 20 19 23 23 C 1.38228 * 119.99965 * 359.97438 * 22 21 20 24 24 C 1.54628 * 110.48867 * 122.54188 * 2 1 3 25 25 C 1.54824 * 101.60651 * 143.56786 * 24 2 1 26 26 N 1.46767 * 105.49602 * 334.56834 * 25 24 2 27 27 C 1.34422 * 111.29880 * 17.03469 * 26 25 24 28 28 O 1.21284 * 124.94232 * 179.62522 * 27 26 25 29 29 H 1.08999 * 109.47040 * 59.29678 * 1 2 3 30 30 H 1.08997 * 109.46762 * 179.30073 * 1 2 3 31 31 H 1.09001 * 109.46866 * 299.29953 * 1 2 3 32 32 H 0.97000 * 119.99708 * 359.97438 * 5 3 2 33 33 H 1.09002 * 109.47391 * 59.99686 * 6 5 3 34 34 H 1.09001 * 109.46813 * 299.99742 * 6 5 3 35 35 H 0.96996 * 120.00090 * 335.00419 * 9 7 6 36 36 H 0.96994 * 120.00251 * 180.02562 * 13 12 10 37 37 H 1.08000 * 119.99700 * 359.97438 * 19 18 7 38 38 H 1.08004 * 120.00427 * 180.27654 * 20 19 18 39 39 H 1.07998 * 120.00207 * 179.83305 * 21 20 19 40 40 H 1.08000 * 119.99731 * 179.97438 * 22 21 20 41 41 H 1.08001 * 120.00527 * 179.97438 * 23 22 21 42 42 H 1.08998 * 110.96776 * 261.73114 * 24 2 1 43 43 H 1.09007 * 110.96791 * 25.48753 * 24 2 1 44 44 H 1.08999 * 110.22425 * 215.56893 * 25 24 2 45 45 H 1.09002 * 110.32868 * 93.62328 * 25 24 2 46 46 H 0.96997 * 124.34902 * 197.01132 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0562 1.4122 0.0000 4 8 2.7705 1.7932 0.9031 5 7 1.7330 2.2517 -1.0036 6 6 2.2449 3.6244 -1.0039 7 6 1.7322 4.3596 -2.2438 8 1 0.6480 4.4562 -2.1866 9 7 2.0922 3.6017 -3.4447 10 6 1.3529 3.7400 -4.5889 11 1 0.5039 4.4075 -4.6060 12 6 1.6936 3.0215 -5.7266 13 7 2.7278 2.2076 -5.7058 14 14 0.6854 3.2107 -7.2878 15 1 0.7235 4.6269 -7.7330 16 1 1.2518 2.3426 -8.3512 17 1 -0.7203 2.8135 -7.0204 18 6 2.3558 5.7300 -2.3089 19 6 3.6438 5.8812 -2.7877 20 6 4.2142 7.1387 -2.8516 21 6 3.5001 8.2439 -2.4281 22 6 2.2140 8.0921 -1.9444 23 6 1.6420 6.8352 -1.8847 24 6 2.0713 -0.7792 1.2211 25 6 3.3233 -1.4656 0.6225 26 7 3.0583 -1.5786 -0.8166 27 6 2.0594 -0.7623 -1.1947 28 8 1.6429 -0.6533 -2.3285 29 1 -0.3633 0.5247 -0.8836 30 1 -0.3633 -1.0276 -0.0125 31 1 -0.3633 0.5029 0.8962 32 1 1.1620 1.9468 -1.7261 33 1 3.3347 3.6058 -1.0167 34 1 1.9009 4.1406 -0.1076 35 1 2.8543 3.0019 -3.4293 36 1 2.9662 1.7058 -6.5009 37 1 4.2032 5.0172 -3.1147 38 1 5.2189 7.2574 -3.2298 39 1 3.9468 9.2261 -2.4755 40 1 1.6563 8.9556 -1.6132 41 1 0.6374 6.7164 -1.5065 42 1 2.3449 -0.0990 2.0277 43 1 1.3471 -1.5180 1.5646 44 1 3.4561 -2.4549 1.0604 45 1 4.2093 -0.8549 0.7961 46 1 3.5419 -2.1665 -1.4177 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753302357.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:20:40 Heat of formation + Delta-G solvation = -32.533765 kcal Electronic energy + Delta-G solvation = -29047.132948 eV Core-core repulsion = 25129.724496 eV Total energy + Delta-G solvation = -3917.408452 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.06952 -39.05766 -38.45411 -36.36404 -35.71845 -33.70070 -33.05029 -31.85824 -30.39414 -29.51273 -28.84805 -27.43535 -25.48434 -23.90500 -22.99403 -22.10578 -21.85393 -21.33207 -19.99346 -19.11876 -17.55951 -17.21478 -17.14916 -16.34573 -15.71329 -15.44941 -15.05594 -14.94286 -14.64231 -14.35868 -14.11687 -13.86089 -13.70157 -13.55567 -13.28461 -12.92646 -12.84907 -12.74812 -12.68037 -12.46597 -12.25256 -12.20757 -11.92869 -11.45356 -11.19454 -11.08401 -10.88977 -10.78479 -10.67657 -10.43929 -10.11078 -9.86630 -9.72037 -9.50971 -9.07538 -8.99098 -8.69996 -8.39108 -8.16661 -7.04468 -5.76276 -3.07946 1.88014 1.94538 2.46484 2.86596 3.34225 3.45405 3.50022 3.50656 3.54142 4.19485 4.32132 4.33945 4.58304 4.64692 4.94238 4.98404 5.22543 5.27158 5.36153 5.39278 5.43160 5.52299 5.57012 5.59411 5.60962 5.63427 5.76173 5.80724 5.89250 5.91461 6.04790 6.05789 6.11583 6.28611 6.42952 6.50560 6.65171 6.76234 6.78732 6.95067 7.02354 7.03935 7.31109 7.54736 7.70943 7.84558 8.30660 8.38401 8.44285 9.51529 10.01152 10.37083 11.44716 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.009318 B = 0.004606 C = 0.003426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3004.056187 B = 6077.373370 C = 8171.340070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.119 4.119 3 C 0.532 3.468 4 O -0.546 6.546 5 N -0.701 5.701 6 C 0.120 3.880 7 C 0.197 3.803 8 H 0.065 0.935 9 N -0.711 5.711 10 C -0.248 4.248 11 H 0.070 0.930 12 C -0.002 4.002 13 N -0.922 5.922 14 Si 0.905 3.095 15 H -0.287 1.287 16 H -0.292 1.292 17 H -0.285 1.285 18 C -0.080 4.080 19 C -0.083 4.083 20 C -0.127 4.127 21 C -0.135 4.135 22 C -0.130 4.130 23 C -0.120 4.120 24 C -0.116 4.116 25 C 0.101 3.899 26 N -0.732 5.732 27 C 0.525 3.475 28 O -0.493 6.493 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.417 0.583 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.387 0.613 36 H 0.256 0.744 37 H 0.122 0.878 38 H 0.113 0.887 39 H 0.111 0.889 40 H 0.112 0.888 41 H 0.114 0.886 42 H 0.107 0.893 43 H 0.087 0.913 44 H 0.080 0.920 45 H 0.075 0.925 46 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.632 -2.507 15.356 15.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.126 4.126 3 C 0.316 3.684 4 O -0.424 6.424 5 N -0.353 5.353 6 C -0.004 4.004 7 C 0.086 3.914 8 H 0.083 0.917 9 N -0.352 5.352 10 C -0.378 4.378 11 H 0.088 0.912 12 C -0.199 4.199 13 N -0.569 5.569 14 Si 0.736 3.264 15 H -0.214 1.214 16 H -0.218 1.218 17 H -0.212 1.212 18 C -0.084 4.084 19 C -0.102 4.102 20 C -0.146 4.146 21 C -0.153 4.153 22 C -0.148 4.148 23 C -0.139 4.139 24 C -0.154 4.154 25 C -0.023 4.023 26 N -0.389 5.389 27 C 0.308 3.692 28 O -0.365 6.365 29 H 0.094 0.906 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.255 0.745 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.221 0.779 36 H 0.066 0.934 37 H 0.140 0.860 38 H 0.131 0.869 39 H 0.129 0.871 40 H 0.130 0.870 41 H 0.132 0.868 42 H 0.126 0.874 43 H 0.106 0.894 44 H 0.098 0.902 45 H 0.093 0.907 46 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -0.540 -2.087 15.259 15.411 hybrid contribution -0.151 -0.394 -1.694 1.746 sum -0.690 -2.481 13.565 13.807 Atomic orbital electron populations 1.21678 0.89833 1.03467 1.03677 1.21604 0.99467 0.94402 0.97120 1.19620 0.80596 0.85867 0.82306 1.90651 1.37900 1.77196 1.36687 1.45982 1.51490 1.12495 1.25298 1.21634 0.99244 0.81244 0.98319 1.19472 0.97395 0.87521 0.86998 0.91690 1.42406 1.35822 1.49636 1.07313 1.19077 1.08369 1.21397 0.88993 0.91236 1.24712 0.98119 0.99088 0.97984 1.69646 1.28090 1.30190 1.28953 0.86317 0.79585 0.77167 0.83343 1.21353 1.21760 1.21187 1.21004 0.94229 0.96962 0.96192 1.21002 0.95124 0.97094 0.96930 1.21097 0.99751 0.93050 1.00660 1.20974 0.95189 0.98118 1.01033 1.20977 0.95597 0.96951 1.01279 1.21004 0.99617 0.92471 1.00829 1.22732 0.96606 0.99181 0.96864 1.22129 0.98733 1.01252 0.80233 1.46109 1.37499 1.44570 1.10738 1.20312 0.80100 0.79889 0.88913 1.90920 1.60219 1.64729 1.20597 0.90637 0.91203 0.91023 0.74483 0.91586 0.91325 0.77863 0.93422 0.85981 0.86901 0.87119 0.87020 0.86759 0.87425 0.89421 0.90205 0.90711 0.74861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.48 8.31 37.16 0.31 -1.17 16 2 C -0.12 -1.59 0.74 -155.67 -0.12 -1.71 16 3 C 0.53 8.66 6.55 -10.98 -0.07 8.59 16 4 O -0.55 -9.75 15.46 5.56 0.09 -9.66 16 5 N -0.70 -12.13 5.25 -60.29 -0.32 -12.45 16 6 C 0.12 2.08 5.21 -4.04 -0.02 2.05 16 7 C 0.20 3.76 2.64 -69.08 -0.18 3.57 16 8 H 0.07 1.23 7.94 -51.93 -0.41 0.81 16 9 N -0.71 -16.77 3.81 -54.55 -0.21 -16.98 16 10 C -0.25 -6.63 9.92 -15.06 -0.15 -6.78 16 11 H 0.07 1.83 7.83 -52.48 -0.41 1.42 16 12 C 0.00 -0.05 5.50 -17.43 -0.10 -0.15 16 13 N -0.92 -27.58 13.06 55.49 0.72 -26.86 16 14 Si 0.91 22.55 29.55 -169.99 -5.02 17.53 16 15 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 16 H -0.29 -7.38 7.11 56.52 0.40 -6.97 16 17 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 18 C -0.08 -1.47 4.92 -104.62 -0.51 -1.98 16 19 C -0.08 -1.56 9.32 -39.58 -0.37 -1.93 16 20 C -0.13 -2.10 10.05 -39.59 -0.40 -2.50 16 21 C -0.13 -2.02 10.05 -39.58 -0.40 -2.42 16 22 C -0.13 -1.93 10.05 -39.58 -0.40 -2.33 16 23 C -0.12 -1.95 9.67 -39.59 -0.38 -2.34 16 24 C -0.12 -1.14 6.06 -24.91 -0.15 -1.29 16 25 C 0.10 0.95 7.79 -2.94 -0.02 0.93 16 26 N -0.73 -8.99 6.24 -59.01 -0.37 -9.36 16 27 C 0.52 8.33 7.13 -10.86 -0.08 8.25 16 28 O -0.49 -10.19 17.83 5.55 0.10 -10.09 16 29 H 0.07 0.98 7.59 -51.93 -0.39 0.59 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.42 7.85 7.54 -40.82 -0.31 7.54 16 33 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 34 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.39 10.00 7.80 -40.82 -0.32 9.68 16 36 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 37 H 0.12 2.47 7.73 -52.49 -0.41 2.06 16 38 H 0.11 1.63 8.06 -52.48 -0.42 1.21 16 39 H 0.11 1.36 8.06 -52.49 -0.42 0.94 16 40 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 41 H 0.11 1.62 8.04 -52.49 -0.42 1.20 16 42 H 0.11 1.11 6.94 -51.93 -0.36 0.75 16 43 H 0.09 0.65 7.92 -51.93 -0.41 0.24 16 44 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 45 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.41 4.50 8.96 -40.82 -0.37 4.13 16 LS Contribution 386.05 15.07 5.82 5.82 Total: -1.00 -33.38 386.05 -8.98 -42.36 By element: Atomic # 1 Polarization: 27.62 SS G_CDS: -6.75 Total: 20.87 kcal Atomic # 6 Polarization: 1.85 SS G_CDS: -3.04 Total: -1.19 kcal Atomic # 7 Polarization: -65.47 SS G_CDS: -0.17 Total: -65.64 kcal Atomic # 8 Polarization: -19.93 SS G_CDS: 0.18 Total: -19.75 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.38 -8.98 -42.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753302357.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.825 kcal (2) G-P(sol) polarization free energy of solvation -33.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds