Wall clock time and date at job start Tue Mar 31 2020 17:20:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50703 * 110.43395 * 2 1 4 4 O 1.21278 * 119.99985 * 120.70565 * 3 2 1 5 5 N 1.34779 * 119.99944 * 300.70277 * 3 2 1 6 6 C 1.46499 * 119.99872 * 180.02562 * 5 3 2 7 7 C 1.53000 * 109.46840 * 180.02562 * 6 5 3 8 8 H 1.08991 * 109.47625 * 64.99762 * 7 6 5 9 9 N 1.46504 * 109.47054 * 304.99499 * 7 6 5 10 10 C 1.36929 * 119.99940 * 155.00291 * 9 7 6 11 11 H 1.08007 * 120.00260 * 359.97438 * 10 9 7 12 12 C 1.38808 * 120.00410 * 180.02562 * 10 9 7 13 13 N 1.31625 * 119.99828 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 120.00548 * 180.02562 * 12 10 9 15 15 H 1.48504 * 109.47186 * 59.99665 * 14 12 10 16 16 H 1.48502 * 109.47374 * 179.97438 * 14 12 10 17 17 H 1.48505 * 109.47097 * 300.00036 * 14 12 10 18 18 C 1.50703 * 109.46801 * 184.99719 * 7 6 5 19 19 C 1.38241 * 119.99868 * 79.72601 * 18 7 6 20 20 C 1.38229 * 119.99866 * 179.78587 * 19 18 7 21 21 C 1.38233 * 120.00168 * 0.44091 * 20 19 18 22 22 C 1.38242 * 119.99856 * 359.81074 * 21 20 19 23 23 C 1.38228 * 119.99965 * 359.97438 * 22 21 20 24 24 C 1.54628 * 110.48867 * 122.54188 * 2 1 3 25 25 C 1.54824 * 101.60651 * 143.56786 * 24 2 1 26 26 N 1.46767 * 105.49602 * 334.56834 * 25 24 2 27 27 C 1.34422 * 111.29880 * 17.03469 * 26 25 24 28 28 O 1.21284 * 124.94232 * 179.62522 * 27 26 25 29 29 H 1.08999 * 109.47040 * 59.29678 * 1 2 3 30 30 H 1.08997 * 109.46762 * 179.30073 * 1 2 3 31 31 H 1.09001 * 109.46866 * 299.29953 * 1 2 3 32 32 H 0.97000 * 119.99708 * 359.97438 * 5 3 2 33 33 H 1.09002 * 109.47391 * 59.99686 * 6 5 3 34 34 H 1.09001 * 109.46813 * 299.99742 * 6 5 3 35 35 H 0.96996 * 120.00090 * 335.00419 * 9 7 6 36 36 H 0.96994 * 120.00251 * 180.02562 * 13 12 10 37 37 H 1.08000 * 119.99700 * 359.97438 * 19 18 7 38 38 H 1.08004 * 120.00427 * 180.27654 * 20 19 18 39 39 H 1.07998 * 120.00207 * 179.83305 * 21 20 19 40 40 H 1.08000 * 119.99731 * 179.97438 * 22 21 20 41 41 H 1.08001 * 120.00527 * 179.97438 * 23 22 21 42 42 H 1.08998 * 110.96776 * 261.73114 * 24 2 1 43 43 H 1.09007 * 110.96791 * 25.48753 * 24 2 1 44 44 H 1.08999 * 110.22425 * 215.56893 * 25 24 2 45 45 H 1.09002 * 110.32868 * 93.62328 * 25 24 2 46 46 H 0.96997 * 124.34902 * 197.01132 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0562 1.4122 0.0000 4 8 2.7705 1.7932 0.9031 5 7 1.7330 2.2517 -1.0036 6 6 2.2449 3.6244 -1.0039 7 6 1.7322 4.3596 -2.2438 8 1 0.6480 4.4562 -2.1866 9 7 2.0922 3.6017 -3.4447 10 6 1.3529 3.7400 -4.5889 11 1 0.5039 4.4075 -4.6060 12 6 1.6936 3.0215 -5.7266 13 7 2.7278 2.2076 -5.7058 14 14 0.6854 3.2107 -7.2878 15 1 0.7235 4.6269 -7.7330 16 1 1.2518 2.3426 -8.3512 17 1 -0.7203 2.8135 -7.0204 18 6 2.3558 5.7300 -2.3089 19 6 3.6438 5.8812 -2.7877 20 6 4.2142 7.1387 -2.8516 21 6 3.5001 8.2439 -2.4281 22 6 2.2140 8.0921 -1.9444 23 6 1.6420 6.8352 -1.8847 24 6 2.0713 -0.7792 1.2211 25 6 3.3233 -1.4656 0.6225 26 7 3.0583 -1.5786 -0.8166 27 6 2.0594 -0.7623 -1.1947 28 8 1.6429 -0.6533 -2.3285 29 1 -0.3633 0.5247 -0.8836 30 1 -0.3633 -1.0276 -0.0125 31 1 -0.3633 0.5029 0.8962 32 1 1.1620 1.9468 -1.7261 33 1 3.3347 3.6058 -1.0167 34 1 1.9009 4.1406 -0.1076 35 1 2.8543 3.0019 -3.4293 36 1 2.9662 1.7058 -6.5009 37 1 4.2032 5.0172 -3.1147 38 1 5.2189 7.2574 -3.2298 39 1 3.9468 9.2261 -2.4755 40 1 1.6563 8.9556 -1.6132 41 1 0.6374 6.7164 -1.5065 42 1 2.3449 -0.0990 2.0277 43 1 1.3471 -1.5180 1.5646 44 1 3.4561 -2.4549 1.0604 45 1 4.2093 -0.8549 0.7961 46 1 3.5419 -2.1665 -1.4177 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753302357.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:20:39 Heat of formation + Delta-G solvation = -56.870754 kcal Electronic energy + Delta-G solvation = -29048.188279 eV Core-core repulsion = 25129.724496 eV Total energy + Delta-G solvation = -3918.463783 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.23009 -40.41158 -39.76509 -37.67481 -37.14756 -35.27937 -34.30186 -33.45966 -31.70728 -31.19108 -29.84101 -28.86155 -26.54561 -25.70478 -24.47199 -23.31513 -22.98282 -22.53184 -21.44353 -20.38163 -19.30456 -18.57741 -18.30774 -17.71103 -17.06219 -16.90166 -16.46034 -16.24171 -15.98813 -15.76436 -15.55890 -15.21835 -14.98814 -14.83922 -14.67467 -14.39580 -14.17343 -14.05713 -13.89335 -13.54678 -13.42315 -13.35555 -13.18770 -12.90403 -12.79191 -12.49042 -12.28419 -12.20312 -12.12759 -12.01942 -11.85086 -11.63938 -11.16040 -10.97915 -10.78122 -10.12445 -10.10508 -9.68145 -9.53120 -9.03380 -7.91718 -5.21338 0.58317 0.64510 1.19457 1.44905 1.47404 1.52757 1.60409 2.19474 2.39712 2.55337 3.01451 3.21039 3.37366 3.42592 3.62450 3.78183 3.91097 4.01359 4.10299 4.15520 4.21652 4.33097 4.35258 4.40882 4.41054 4.65665 4.66717 4.72024 4.74672 4.78410 4.82270 4.99933 5.02274 5.09901 5.15412 5.21597 5.30032 5.39283 5.52351 5.69101 5.72997 5.76973 5.94088 5.95601 6.24547 6.27893 6.44593 7.05815 7.17804 7.34318 8.03217 8.28313 9.30043 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.009318 B = 0.004606 C = 0.003426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3004.056187 B = 6077.373370 C = 8171.340070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.117 4.117 3 C 0.529 3.471 4 O -0.562 6.562 5 N -0.707 5.707 6 C 0.131 3.869 7 C 0.201 3.799 8 H 0.069 0.931 9 N -0.717 5.717 10 C -0.233 4.233 11 H 0.075 0.925 12 C -0.066 4.066 13 N -0.961 5.961 14 Si 0.964 3.036 15 H -0.281 1.281 16 H -0.300 1.300 17 H -0.278 1.278 18 C -0.099 4.099 19 C -0.110 4.110 20 C -0.136 4.136 21 C -0.130 4.130 22 C -0.124 4.124 23 C -0.125 4.125 24 C -0.107 4.107 25 C 0.097 3.903 26 N -0.723 5.723 27 C 0.514 3.486 28 O -0.554 6.554 29 H 0.051 0.949 30 H 0.088 0.912 31 H 0.093 0.907 32 H 0.409 0.591 33 H 0.048 0.952 34 H 0.087 0.913 35 H 0.371 0.629 36 H 0.247 0.753 37 H 0.091 0.909 38 H 0.127 0.873 39 H 0.145 0.855 40 H 0.149 0.851 41 H 0.135 0.865 42 H 0.107 0.893 43 H 0.123 0.877 44 H 0.123 0.877 45 H 0.068 0.932 46 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.736 -1.288 17.577 17.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.124 4.124 3 C 0.314 3.686 4 O -0.442 6.442 5 N -0.357 5.357 6 C 0.007 3.993 7 C 0.092 3.908 8 H 0.087 0.913 9 N -0.356 5.356 10 C -0.365 4.365 11 H 0.093 0.907 12 C -0.259 4.259 13 N -0.610 5.610 14 Si 0.794 3.206 15 H -0.207 1.207 16 H -0.227 1.227 17 H -0.204 1.204 18 C -0.103 4.103 19 C -0.129 4.129 20 C -0.154 4.154 21 C -0.148 4.148 22 C -0.142 4.142 23 C -0.144 4.144 24 C -0.145 4.145 25 C -0.027 4.027 26 N -0.378 5.378 27 C 0.298 3.702 28 O -0.432 6.432 29 H 0.070 0.930 30 H 0.107 0.893 31 H 0.112 0.888 32 H 0.246 0.754 33 H 0.066 0.934 34 H 0.106 0.894 35 H 0.204 0.796 36 H 0.055 0.945 37 H 0.109 0.891 38 H 0.145 0.855 39 H 0.163 0.837 40 H 0.166 0.834 41 H 0.153 0.847 42 H 0.125 0.875 43 H 0.141 0.859 44 H 0.141 0.859 45 H 0.086 0.914 46 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -1.639 -0.846 17.564 17.660 hybrid contribution 0.252 -0.679 -2.245 2.359 sum -1.386 -1.524 15.319 15.457 Atomic orbital electron populations 1.21714 0.88383 1.04704 1.03604 1.21686 1.00695 0.92282 0.97725 1.20149 0.80018 0.86887 0.81506 1.90634 1.38528 1.77882 1.37165 1.46065 1.51520 1.12726 1.25429 1.21497 0.98075 0.81575 0.98197 1.19574 0.97558 0.87894 0.85769 0.91265 1.42434 1.34969 1.50129 1.08102 1.19404 1.07755 1.19646 0.89700 0.90732 1.25425 0.99592 0.99874 1.00975 1.69817 1.30210 1.31967 1.29043 0.85362 0.78411 0.76962 0.79901 1.20715 1.22707 1.20391 1.20831 0.94508 0.96878 0.98064 1.20918 0.95708 0.97356 0.98930 1.21326 1.00704 0.92663 1.00728 1.21394 0.95167 0.98924 0.99311 1.21418 0.95642 0.97427 0.99728 1.21272 1.00371 0.92350 1.00384 1.22846 0.97271 0.99369 0.95009 1.22415 0.98301 1.03609 0.78325 1.46230 1.35992 1.43211 1.12352 1.20815 0.80490 0.80199 0.88703 1.90883 1.62401 1.66832 1.23037 0.92960 0.89279 0.88848 0.75408 0.93399 0.89444 0.79646 0.94471 0.89059 0.85511 0.83706 0.83375 0.84697 0.87487 0.85902 0.85879 0.91409 0.74300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.77 8.31 71.98 0.60 -2.17 16 2 C -0.12 -3.06 0.74 -52.93 -0.04 -3.10 16 3 C 0.53 17.37 6.55 87.66 0.57 17.94 16 4 O -0.56 -19.98 15.46 -3.02 -0.05 -20.03 16 5 N -0.71 -25.39 5.25 -463.05 -2.43 -27.82 16 6 C 0.13 4.67 5.21 86.38 0.45 5.12 16 7 C 0.20 7.86 2.64 44.25 0.12 7.98 16 8 H 0.07 2.62 7.94 -2.39 -0.02 2.61 16 9 N -0.72 -35.41 3.81 -326.50 -1.24 -36.65 16 10 C -0.23 -12.83 9.92 84.03 0.83 -11.99 16 11 H 0.07 3.96 7.83 -2.91 -0.02 3.93 16 12 C -0.07 -3.83 5.50 84.86 0.47 -3.36 16 13 N -0.96 -60.25 13.06 21.65 0.28 -59.97 16 14 Si 0.96 47.55 29.55 68.60 2.03 49.58 16 15 H -0.28 -13.40 7.11 99.48 0.71 -12.70 16 16 H -0.30 -15.13 7.11 99.48 0.71 -14.42 16 17 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 18 C -0.10 -3.66 4.92 -19.86 -0.10 -3.76 16 19 C -0.11 -4.27 9.32 22.27 0.21 -4.07 16 20 C -0.14 -4.39 10.05 22.27 0.22 -4.16 16 21 C -0.13 -3.49 10.05 22.27 0.22 -3.27 16 22 C -0.12 -3.25 10.05 22.27 0.22 -3.03 16 23 C -0.13 -3.80 9.67 22.27 0.22 -3.58 16 24 C -0.11 -1.84 6.06 31.77 0.19 -1.65 16 25 C 0.10 1.60 7.79 86.95 0.68 2.28 16 26 N -0.72 -17.37 6.24 -459.20 -2.87 -20.24 16 27 C 0.51 16.63 7.13 87.90 0.63 17.26 16 28 O -0.55 -24.24 17.83 -3.04 -0.05 -24.29 16 29 H 0.05 1.39 7.59 -2.39 -0.02 1.37 16 30 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.41 16.27 7.54 -92.71 -0.70 15.58 16 33 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 35 H 0.37 20.52 7.80 -92.71 -0.72 19.79 16 36 H 0.25 15.29 8.31 -92.71 -0.77 14.52 16 37 H 0.09 4.01 7.73 -2.91 -0.02 3.98 16 38 H 0.13 3.59 8.06 -2.91 -0.02 3.57 16 39 H 0.15 2.90 8.06 -2.91 -0.02 2.88 16 40 H 0.15 2.82 8.06 -2.91 -0.02 2.79 16 41 H 0.14 3.46 8.04 -2.91 -0.02 3.44 16 42 H 0.11 1.94 6.94 -2.39 -0.02 1.92 16 43 H 0.12 1.28 7.92 -2.38 -0.02 1.26 16 44 H 0.12 1.06 8.14 -2.39 -0.02 1.04 16 45 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 46 H 0.42 9.05 8.96 -92.71 -0.83 8.22 16 Total: -1.00 -76.59 386.05 -0.07 -76.66 By element: Atomic # 1 Polarization: 57.54 SS G_CDS: -1.23 Total: 56.31 kcal Atomic # 6 Polarization: 0.95 SS G_CDS: 5.49 Total: 6.44 kcal Atomic # 7 Polarization: -138.42 SS G_CDS: -6.26 Total: -144.68 kcal Atomic # 8 Polarization: -44.22 SS G_CDS: -0.10 Total: -44.32 kcal Atomic # 14 Polarization: 47.55 SS G_CDS: 2.03 Total: 49.58 kcal Total: -76.59 -0.07 -76.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753302357.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.792 kcal (2) G-P(sol) polarization free energy of solvation -76.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds