Wall clock time and date at job start Tue Mar 31 2020 16:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.34865 * 119.09891 * 2 1 4 4 C 1.41669 * 119.34125 * 179.97438 * 3 2 1 5 5 O 1.22087 * 121.07075 * 179.97438 * 4 3 2 6 6 C 1.47105 * 117.86134 * 0.02562 * 4 3 2 7 7 C 1.47286 * 120.88335 * 179.97438 * 6 4 3 8 8 O 1.21623 * 119.99941 * 0.02562 * 7 6 4 9 9 N 1.34777 * 120.00030 * 179.72889 * 7 6 4 10 10 C 1.46504 * 119.99854 * 180.27788 * 9 7 6 11 11 C 1.53576 * 112.23826 * 297.63835 * 10 9 7 12 12 C 1.55468 * 106.05853 * 238.16627 * 11 10 9 13 13 C 1.54757 * 104.36200 * 335.36080 * 12 11 10 14 14 C 1.54777 * 103.21304 * 37.68013 * 13 12 11 15 15 H 1.09005 * 112.61579 * 85.33535 * 14 13 12 16 16 N 1.46981 * 108.68992 * 209.79751 * 14 13 12 17 17 C 1.36933 * 125.57859 * 294.14002 * 16 14 13 18 18 H 1.07998 * 120.00182 * 359.97343 * 17 16 14 19 19 C 1.38818 * 119.99743 * 179.97438 * 17 16 14 20 20 N 1.31617 * 119.99871 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 119.99681 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47489 * 59.99993 * 21 19 17 23 23 H 1.48505 * 109.47124 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47253 * 299.99894 * 21 19 17 25 25 C 1.47370 * 108.84184 * 114.13646 * 16 14 13 26 26 C 1.54874 * 104.81711 * 335.30621 * 25 16 14 27 27 C 1.37995 * 118.23207 * 0.25219 * 6 4 3 28 28 N 1.34339 * 120.37448 * 359.46551 * 27 6 4 29 29 H 0.97002 * 118.80818 * 180.28658 * 28 27 6 30 30 H 1.09002 * 109.46808 * 89.99963 * 1 2 3 31 31 H 1.08995 * 109.47092 * 209.99625 * 1 2 3 32 32 H 1.09004 * 109.46944 * 330.00119 * 1 2 3 33 33 H 1.08006 * 120.33527 * 0.02562 * 3 2 1 34 34 H 0.97000 * 119.99736 * 0.27062 * 9 7 6 35 35 H 1.08998 * 110.02408 * 358.14343 * 11 10 9 36 36 H 1.09005 * 110.01930 * 119.53654 * 11 10 9 37 37 H 1.09003 * 110.50518 * 216.56918 * 12 11 10 38 38 H 1.09000 * 110.39390 * 94.10139 * 12 11 10 39 39 H 1.08994 * 110.67481 * 279.24721 * 13 12 11 40 40 H 1.08999 * 110.66878 * 156.10565 * 13 12 11 41 41 H 0.97007 * 119.99221 * 179.97438 * 20 19 17 42 42 H 1.09002 * 110.36918 * 216.47233 * 25 16 14 43 43 H 1.08999 * 110.36824 * 94.14189 * 25 16 14 44 44 H 1.08997 * 110.97006 * 278.95238 * 26 25 16 45 45 H 1.09008 * 110.96499 * 155.19603 * 26 25 16 46 46 H 1.08004 * 119.80692 * 179.72554 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1629 1.1784 0.0000 4 6 3.5796 1.1844 0.0006 5 8 4.2053 2.2328 0.0001 6 6 4.2726 -0.1132 0.0005 7 6 5.7437 -0.1846 0.0005 8 8 6.4022 0.8379 0.0010 9 7 6.3602 -1.3831 0.0060 10 6 7.8235 -1.4541 0.0122 11 6 8.4411 -0.8267 -1.2462 12 6 9.2827 -1.9485 -1.9173 13 6 9.6318 -2.9122 -0.7578 14 6 8.3446 -2.9126 0.1016 15 1 7.6050 -3.6313 -0.2515 16 7 8.7144 -3.1536 1.5036 17 6 9.2560 -4.3104 1.9972 18 1 9.4446 -5.1433 1.3361 19 6 9.5627 -4.4123 3.3472 20 7 9.3333 -3.3970 4.1526 21 14 10.3009 -5.9906 4.0206 22 1 11.5911 -6.2643 3.3379 23 1 10.5349 -5.8444 5.4798 24 1 9.3644 -7.1175 3.7793 25 6 8.4068 -1.9466 2.2912 26 6 8.4400 -0.7859 1.2664 27 6 3.5076 -1.2617 -0.0054 28 7 2.1665 -1.1847 -0.0001 29 1 1.6510 -2.0064 -0.0002 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5137 32 1 -0.3633 0.8900 0.5138 33 1 1.6137 2.1084 0.0004 34 1 5.8350 -2.1986 0.0060 35 1 7.6536 -0.4791 -1.9149 36 1 9.0896 0.0045 -0.9690 37 1 10.1907 -1.5342 -2.3557 38 1 8.6936 -2.4627 -2.6767 39 1 10.4775 -2.5333 -0.1839 40 1 9.8407 -3.9121 -1.1382 41 1 9.5473 -3.4685 5.0961 42 1 9.1623 -1.7938 3.0620 43 1 7.4169 -2.0284 2.7399 44 1 9.4636 -0.4646 1.0738 45 1 7.8273 0.0502 1.6040 46 1 3.9900 -2.2280 -0.0100 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992375703.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:37:07 Heat of formation + Delta-G solvation = -6.932722 kcal Electronic energy + Delta-G solvation = -29241.150402 eV Core-core repulsion = 25324.852094 eV Total energy + Delta-G solvation = -3916.298308 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.13740 -39.84996 -38.06328 -37.30669 -34.17266 -33.83525 -33.02142 -31.62262 -31.16371 -29.70348 -28.28781 -26.65088 -25.85478 -24.21727 -23.77657 -22.42341 -21.49125 -20.12230 -19.89781 -18.88020 -18.44562 -17.49100 -16.93207 -16.38769 -16.18107 -15.55532 -15.37662 -14.88385 -14.70315 -14.41584 -14.03216 -13.81748 -13.52709 -13.34815 -13.26394 -13.15990 -12.96968 -12.92706 -12.68265 -12.44758 -12.09997 -11.73328 -11.57895 -11.10268 -10.95288 -10.81900 -10.60683 -10.47410 -10.14040 -10.02608 -9.89084 -9.72142 -9.68673 -9.60428 -9.47960 -8.98013 -8.63135 -8.44459 -8.14740 -6.83055 -5.62198 -3.05865 0.74296 1.15638 2.43576 3.18567 3.38967 3.43539 3.45554 3.47190 3.93917 3.95787 4.27537 4.48092 4.51243 4.73829 4.86523 4.87260 4.96264 5.22699 5.25195 5.29289 5.40055 5.50421 5.55185 5.66737 5.71457 5.89327 5.94284 6.07274 6.11269 6.18695 6.22693 6.37087 6.42911 6.47658 6.50999 6.58661 6.63805 6.66928 6.86626 6.91325 7.08031 7.23668 7.60161 7.66813 7.90811 7.97997 8.15488 8.40260 8.74867 9.23468 9.84586 10.49585 11.39741 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.014458 B = 0.003427 C = 0.003088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.175664 B = 8167.686078 C = 9065.920090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.153 3.847 3 C -0.270 4.270 4 C 0.407 3.593 5 O -0.477 6.477 6 C -0.291 4.291 7 C 0.570 3.430 8 O -0.506 6.506 9 N -0.711 5.711 10 C 0.164 3.836 11 C -0.112 4.112 12 C -0.124 4.124 13 C -0.128 4.128 14 C 0.163 3.837 15 H 0.044 0.956 16 N -0.596 5.596 17 C -0.221 4.221 18 H 0.076 0.924 19 C -0.010 4.010 20 N -0.919 5.919 21 Si 0.912 3.088 22 H -0.285 1.285 23 H -0.291 1.291 24 H -0.287 1.287 25 C 0.153 3.847 26 C -0.143 4.143 27 C 0.169 3.831 28 N -0.579 5.579 29 H 0.420 0.580 30 H 0.088 0.912 31 H 0.076 0.924 32 H 0.093 0.907 33 H 0.150 0.850 34 H 0.389 0.611 35 H 0.060 0.940 36 H 0.070 0.930 37 H 0.058 0.942 38 H 0.056 0.944 39 H 0.074 0.926 40 H 0.057 0.943 41 H 0.252 0.748 42 H 0.107 0.893 43 H 0.008 0.992 44 H 0.067 0.933 45 H 0.070 0.930 46 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.698 1.006 -11.140 21.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.046 3.954 3 C -0.294 4.294 4 C 0.292 3.708 5 O -0.358 6.358 6 C -0.302 4.302 7 C 0.356 3.644 8 O -0.381 6.381 9 N -0.362 5.362 10 C 0.078 3.922 11 C -0.151 4.151 12 C -0.162 4.162 13 C -0.168 4.168 14 C 0.055 3.945 15 H 0.062 0.938 16 N -0.320 5.320 17 C -0.350 4.350 18 H 0.094 0.906 19 C -0.206 4.206 20 N -0.567 5.567 21 Si 0.743 3.257 22 H -0.212 1.212 23 H -0.217 1.217 24 H -0.214 1.214 25 C 0.029 3.971 26 C -0.183 4.183 27 C 0.038 3.962 28 N -0.186 5.186 29 H 0.256 0.744 30 H 0.107 0.893 31 H 0.095 0.905 32 H 0.112 0.888 33 H 0.168 0.832 34 H 0.223 0.777 35 H 0.079 0.921 36 H 0.088 0.912 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.093 0.907 40 H 0.076 0.924 41 H 0.063 0.937 42 H 0.125 0.875 43 H 0.026 0.974 44 H 0.085 0.915 45 H 0.088 0.912 46 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -17.791 2.295 -10.881 20.981 hybrid contribution -0.264 -1.851 0.429 1.919 sum -18.056 0.443 -10.452 20.867 Atomic orbital electron populations 1.21088 0.88003 1.04879 1.04229 1.20260 0.94716 0.85579 0.94853 1.22268 0.96375 0.97260 1.13541 1.18167 0.88201 0.87985 0.76400 1.90828 1.69938 1.33214 1.41786 1.22665 0.94867 0.95010 1.17650 1.17416 0.85821 0.83865 0.77320 1.90837 1.65610 1.33873 1.47762 1.45824 1.07114 1.07250 1.76044 1.21606 0.77991 0.96707 0.95919 1.22502 0.98893 0.97749 0.95938 1.22569 0.99009 0.96792 0.97831 1.22914 0.99826 0.98169 0.95921 1.21774 0.93852 0.91273 0.87631 0.93845 1.44535 1.72722 1.13251 1.01505 1.18979 1.33325 0.90613 0.92049 0.90628 1.24784 1.01774 0.97910 0.96098 1.69813 1.53550 1.29378 1.03983 0.86193 0.79038 0.82511 0.77947 1.21195 1.21662 1.21377 1.21960 0.99803 0.82205 0.93154 1.23344 0.99638 0.99419 0.95884 1.22258 0.82545 1.00152 0.91260 1.40684 1.05938 1.08899 1.63072 0.74385 0.89327 0.90480 0.88802 0.83190 0.77680 0.92145 0.91166 0.92322 0.92492 0.90684 0.92424 0.93725 0.87536 0.97414 0.91473 0.91179 0.81334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.30 10.03 36.01 0.36 0.06 16 2 C 0.15 1.00 6.79 -82.13 -0.56 0.44 16 3 C -0.27 -2.90 9.57 -39.47 -0.38 -3.28 16 4 C 0.41 6.59 6.97 -34.68 -0.24 6.35 16 5 O -0.48 -10.17 16.41 -15.18 -0.25 -10.42 16 6 C -0.29 -4.20 6.05 -102.71 -0.62 -4.83 16 7 C 0.57 10.28 6.96 -12.58 -0.09 10.19 16 8 O -0.51 -11.43 13.38 -14.76 -0.20 -11.63 16 9 N -0.71 -11.58 5.18 -46.46 -0.24 -11.82 16 10 C 0.16 3.06 0.74 -129.38 -0.10 2.96 16 11 C -0.11 -1.94 5.41 -25.12 -0.14 -2.07 16 12 C -0.12 -1.91 6.87 -24.49 -0.17 -2.08 16 13 C -0.13 -2.34 6.22 -24.87 -0.15 -2.49 16 14 C 0.16 3.23 3.67 -65.60 -0.24 2.99 16 15 H 0.04 0.82 7.96 -51.93 -0.41 0.41 16 16 N -0.60 -14.61 3.03 -161.12 -0.49 -15.10 16 17 C -0.22 -5.92 10.01 -15.06 -0.15 -6.07 16 18 H 0.08 1.94 7.83 -52.49 -0.41 1.53 16 19 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16 20 N -0.92 -26.63 10.07 55.49 0.56 -26.07 16 21 Si 0.91 21.69 29.55 -169.99 -5.02 16.66 16 22 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 24 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 25 C 0.15 3.82 5.91 -2.58 -0.02 3.81 16 26 C -0.14 -3.12 5.71 -24.74 -0.14 -3.26 16 27 C 0.17 1.44 10.74 -16.54 -0.18 1.27 16 28 N -0.58 -3.10 5.16 -9.00 -0.05 -3.15 16 29 H 0.42 0.52 8.70 -40.82 -0.35 0.16 16 30 H 0.09 0.13 8.14 -51.93 -0.42 -0.30 16 31 H 0.08 0.06 8.12 -51.93 -0.42 -0.37 16 32 H 0.09 0.21 8.05 -51.93 -0.42 -0.21 16 33 H 0.15 1.40 8.06 -52.48 -0.42 0.97 16 34 H 0.39 5.10 6.56 -40.82 -0.27 4.84 16 35 H 0.06 1.04 7.58 -51.93 -0.39 0.65 16 36 H 0.07 1.28 7.37 -51.93 -0.38 0.90 16 37 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.07 1.53 8.09 -51.93 -0.42 1.11 16 40 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 42 H 0.11 3.01 5.82 -51.93 -0.30 2.71 16 43 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 44 H 0.07 1.46 7.63 -51.93 -0.40 1.06 16 45 H 0.07 1.61 6.53 -51.92 -0.34 1.27 16 46 H 0.17 0.95 6.42 -52.48 -0.34 0.61 16 LS Contribution 364.95 15.07 5.50 5.50 Total: -1.00 -38.71 364.95 -9.62 -48.33 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -6.53 Total: 4.09 kcal Atomic # 6 Polarization: 6.52 SS G_CDS: -2.90 Total: 3.61 kcal Atomic # 7 Polarization: -55.92 SS G_CDS: -0.22 Total: -56.14 kcal Atomic # 8 Polarization: -21.61 SS G_CDS: -0.45 Total: -22.05 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -38.71 -9.62 -48.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992375703.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.397 kcal (2) G-P(sol) polarization free energy of solvation -38.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds