Wall clock time and date at job start Tue Mar 31 2020 16:34:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.34874 * 119.10041 * 2 1 4 4 C 1.41668 * 119.33818 * 179.97438 * 3 2 1 5 5 O 1.22089 * 121.06539 * 180.02562 * 4 3 2 6 6 C 1.47099 * 117.86637 * 359.97438 * 4 3 2 7 7 C 1.47281 * 120.88538 * 179.97438 * 6 4 3 8 8 O 1.21625 * 119.99845 * 306.29234 * 7 6 4 9 9 N 1.34778 * 120.00255 * 126.28711 * 7 6 4 10 10 C 1.46890 * 120.46087 * 174.22519 * 9 7 6 11 11 C 1.53365 * 108.74106 * 124.39030 * 10 9 7 12 12 C 1.52549 * 109.12631 * 52.25563 * 11 10 9 13 13 C 1.52968 * 114.06159 * 75.54259 * 12 11 10 14 14 N 1.47166 * 87.85384 * 139.43962 * 13 12 11 15 15 C 1.36931 * 136.00057 * 153.07918 * 14 13 12 16 16 H 1.07998 * 119.99955 * 0.02562 * 15 14 13 17 17 C 1.38810 * 120.00184 * 180.02562 * 15 14 13 18 18 N 1.31625 * 119.99738 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00435 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47175 * 89.99500 * 19 17 15 21 21 H 1.48494 * 109.47313 * 209.99953 * 19 17 15 22 22 H 1.48505 * 109.46626 * 329.99791 * 19 17 15 23 23 C 1.47171 * 87.99751 * 333.33630 * 14 13 12 24 24 C 1.52551 * 113.43499 * 302.67118 * 12 11 10 25 25 C 1.46885 * 120.46183 * 354.24653 * 9 7 6 26 26 C 1.37992 * 118.23367 * 0.25444 * 6 4 3 27 27 N 1.34350 * 120.37043 * 359.50803 * 26 6 4 28 28 H 0.97001 * 118.80072 * 180.23815 * 27 26 6 29 29 H 1.09006 * 109.46762 * 90.00824 * 1 2 3 30 30 H 1.08995 * 109.47148 * 210.00403 * 1 2 3 31 31 H 1.09000 * 109.47677 * 330.00857 * 1 2 3 32 32 H 1.07997 * 120.32592 * 359.96637 * 3 2 1 33 33 H 1.09001 * 109.59920 * 4.61044 * 10 9 7 34 34 H 1.08998 * 109.59093 * 244.16207 * 10 9 7 35 35 H 1.08996 * 109.52435 * 292.36281 * 11 10 9 36 36 H 1.08994 * 109.58753 * 172.18590 * 11 10 9 37 37 H 1.08998 * 113.48875 * 24.69102 * 13 12 11 38 38 H 1.09001 * 113.48590 * 254.18638 * 13 12 11 39 39 H 0.96997 * 119.99697 * 180.02562 * 18 17 15 40 40 H 1.08998 * 113.48542 * 141.41350 * 23 14 13 41 41 H 1.08997 * 113.48939 * 271.91701 * 23 14 13 42 42 H 1.08995 * 109.52876 * 177.21740 * 24 12 11 43 43 H 1.09006 * 109.52916 * 297.42495 * 24 12 11 44 44 H 1.09004 * 109.58804 * 355.38298 * 25 9 7 45 45 H 1.09002 * 109.58885 * 115.82283 * 25 9 7 46 46 H 1.08003 * 119.81292 * 179.72463 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1629 1.1785 0.0000 4 6 3.5796 1.1844 0.0006 5 8 4.2052 2.2328 0.0010 6 6 4.2725 -0.1132 0.0017 7 6 5.7436 -0.1847 0.0017 8 8 6.3812 0.4078 -0.8478 9 7 6.3832 -0.9065 0.9432 10 6 7.8394 -1.0890 0.8800 11 6 8.4539 -0.6088 2.2006 12 6 7.7380 -1.2908 3.3622 13 6 8.1331 -2.7546 3.5653 14 7 8.1168 -2.5003 5.0147 15 6 7.9087 -3.2470 6.1435 16 1 7.6948 -4.3024 6.0609 17 6 7.9727 -2.6476 7.3938 18 7 8.2329 -1.3612 7.4944 19 14 7.6895 -3.6663 8.9338 20 1 8.9842 -4.2186 9.4070 21 1 7.1002 -2.8088 9.9932 22 1 6.7588 -4.7816 8.6251 23 6 8.4158 -1.0901 4.7185 24 6 6.2325 -1.0452 3.3753 25 6 5.6338 -1.5220 2.0464 26 6 3.5076 -1.2617 -0.0032 27 7 2.1664 -1.1846 0.0010 28 1 1.6510 -2.0064 0.0009 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3633 -0.8899 0.5139 31 1 -0.3634 0.8900 0.5137 32 1 1.6136 2.1083 -0.0005 33 1 8.2455 -0.5049 0.0541 34 1 8.0694 -2.1441 0.7322 35 1 8.3376 0.4717 2.2848 36 1 9.5132 -0.8643 2.2249 37 1 9.1230 -2.9952 3.1775 38 1 7.3689 -3.4601 3.2393 39 1 8.2779 -0.9424 8.3681 40 1 7.8904 -0.3891 5.3671 41 1 9.4824 -0.8785 4.6440 42 1 5.7802 -1.5988 4.1981 43 1 6.0381 0.0199 3.5012 44 1 4.5872 -1.2231 1.9888 45 1 5.7105 -2.6073 1.9795 46 1 3.9900 -2.2281 -0.0071 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035831735.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:34:54 Heat of formation + Delta-G solvation = 25.121016 kcal Electronic energy + Delta-G solvation = -28945.874687 eV Core-core repulsion = 25030.966333 eV Total energy + Delta-G solvation = -3914.908354 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.30675 -40.00804 -38.61018 -37.70953 -35.61653 -33.76706 -32.52007 -31.79036 -30.76253 -30.28271 -28.43836 -26.83238 -24.95036 -24.45848 -23.36678 -23.14554 -22.40393 -21.42067 -20.27222 -18.66344 -17.85293 -17.25904 -16.67237 -16.56326 -16.19280 -15.75262 -15.42693 -14.86897 -14.73152 -14.57548 -14.52443 -13.80780 -13.73298 -13.62498 -13.54919 -13.33905 -13.18038 -13.05631 -12.86489 -12.57771 -12.46405 -12.16824 -12.08915 -11.62084 -11.06370 -11.00562 -10.85038 -10.78532 -10.38479 -10.24874 -9.98662 -9.70503 -9.64943 -9.55016 -9.34106 -9.16114 -8.78976 -8.36915 -8.21534 -6.84901 -5.75259 -3.07436 0.74066 1.06151 2.34053 2.79852 3.16965 3.37793 3.42179 3.44918 3.61306 3.90859 4.23140 4.37790 4.45825 4.57743 4.79242 4.84370 4.98403 5.04797 5.10499 5.22273 5.24824 5.38700 5.40417 5.43719 5.54253 5.59179 5.63456 5.72073 5.88444 5.93193 6.05914 6.09092 6.23905 6.33744 6.40906 6.42848 6.51121 6.56034 6.65150 6.71816 6.86150 6.90029 7.25937 7.39545 7.58561 7.59967 7.99404 8.00025 8.37453 9.04861 9.71685 10.67677 11.41989 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.014789 B = 0.003148 C = 0.002820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.856653 B = 8892.986419 C = 9928.293596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.157 3.843 3 C -0.271 4.271 4 C 0.411 3.589 5 O -0.494 6.494 6 C -0.289 4.289 7 C 0.582 3.418 8 O -0.530 6.530 9 N -0.604 5.604 10 C 0.117 3.883 11 C -0.115 4.115 12 C -0.114 4.114 13 C 0.128 3.872 14 N -0.609 5.609 15 C -0.217 4.217 16 H 0.079 0.921 17 C -0.008 4.008 18 N -0.918 5.918 19 Si 0.910 3.090 20 H -0.290 1.290 21 H -0.290 1.290 22 H -0.281 1.281 23 C 0.166 3.834 24 C -0.094 4.094 25 C 0.107 3.893 26 C 0.166 3.834 27 N -0.579 5.579 28 H 0.421 0.579 29 H 0.089 0.911 30 H 0.077 0.923 31 H 0.094 0.906 32 H 0.152 0.848 33 H 0.088 0.912 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.074 0.926 37 H 0.030 0.970 38 H 0.035 0.965 39 H 0.253 0.747 40 H 0.069 0.931 41 H 0.024 0.976 42 H 0.087 0.913 43 H 0.061 0.939 44 H 0.076 0.924 45 H 0.069 0.931 46 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.066 -2.875 -16.827 24.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.050 3.950 3 C -0.295 4.295 4 C 0.298 3.702 5 O -0.376 6.376 6 C -0.299 4.299 7 C 0.370 3.630 8 O -0.406 6.406 9 N -0.338 5.338 10 C -0.005 4.005 11 C -0.154 4.154 12 C -0.115 4.115 13 C 0.002 3.998 14 N -0.334 5.334 15 C -0.344 4.344 16 H 0.097 0.903 17 C -0.205 4.205 18 N -0.565 5.565 19 Si 0.740 3.260 20 H -0.217 1.217 21 H -0.217 1.217 22 H -0.207 1.207 23 C 0.040 3.960 24 C -0.132 4.132 25 C -0.016 4.016 26 C 0.036 3.964 27 N -0.185 5.185 28 H 0.257 0.743 29 H 0.107 0.893 30 H 0.096 0.904 31 H 0.113 0.887 32 H 0.169 0.831 33 H 0.106 0.894 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.092 0.908 37 H 0.048 0.952 38 H 0.053 0.947 39 H 0.063 0.937 40 H 0.088 0.912 41 H 0.042 0.958 42 H 0.105 0.895 43 H 0.080 0.920 44 H 0.094 0.906 45 H 0.087 0.913 46 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -16.416 -2.032 -16.896 23.645 hybrid contribution -0.156 -1.073 1.100 1.545 sum -16.573 -3.105 -15.795 23.104 Atomic orbital electron populations 1.21099 0.87882 1.05018 1.04281 1.20275 0.94802 0.85515 0.94415 1.22201 0.96107 0.97394 1.13836 1.18157 0.88412 0.87642 0.75955 1.90811 1.70101 1.33477 1.43254 1.22399 0.94702 0.95317 1.17526 1.17511 0.85950 0.78264 0.81296 1.90772 1.67399 1.43795 1.38622 1.48056 1.08265 1.51968 1.25462 1.21612 0.78806 1.00956 0.99093 1.21732 0.99443 1.00714 0.93497 1.22058 0.95119 0.97737 0.96604 1.22390 0.97107 0.93524 0.86772 1.45577 1.81901 1.06340 0.99596 1.18898 1.41199 0.91661 0.82683 0.90329 1.24782 1.02312 0.96125 0.97241 1.69836 1.54704 1.09126 1.22823 0.86154 0.77734 0.78915 0.83148 1.21688 1.21665 1.20692 1.22040 0.95842 0.88751 0.89331 1.21398 0.94525 1.01471 0.95836 1.21905 0.95505 0.97373 0.86778 1.22096 0.82421 0.99929 0.91988 1.40689 1.05870 1.08946 1.63020 0.74277 0.89281 0.90375 0.88701 0.83054 0.89376 0.91489 0.91671 0.90776 0.95220 0.94711 0.93680 0.91221 0.95828 0.89452 0.92000 0.90559 0.91299 0.81083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.24 10.03 36.00 0.36 0.12 16 2 C 0.16 0.92 6.79 -82.13 -0.56 0.36 16 3 C -0.27 -2.74 9.57 -39.47 -0.38 -3.12 16 4 C 0.41 6.29 6.96 -34.68 -0.24 6.05 16 5 O -0.49 -10.10 17.44 4.84 0.08 -10.02 16 6 C -0.29 -3.82 4.79 -102.72 -0.49 -4.31 16 7 C 0.58 9.54 6.96 -12.58 -0.09 9.45 16 8 O -0.53 -10.82 16.36 5.26 0.09 -10.74 16 9 N -0.60 -8.78 2.94 -173.94 -0.51 -9.29 16 10 C 0.12 1.70 6.35 -3.64 -0.02 1.67 16 11 C -0.11 -1.84 5.30 -26.77 -0.14 -1.98 16 12 C -0.11 -2.07 0.84 -155.02 -0.13 -2.20 16 13 C 0.13 2.52 7.63 -8.20 -0.06 2.46 16 14 N -0.61 -15.24 3.55 -184.64 -0.66 -15.89 16 15 C -0.22 -5.97 10.74 -15.06 -0.16 -6.13 16 16 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 17 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 18 N -0.92 -27.20 11.51 55.49 0.64 -26.57 16 19 Si 0.91 21.86 29.55 -169.99 -5.02 16.84 16 20 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 21 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 23 C 0.17 3.90 6.54 -8.21 -0.05 3.84 16 24 C -0.09 -1.59 5.27 -26.78 -0.14 -1.73 16 25 C 0.11 1.38 5.53 -3.65 -0.02 1.36 16 26 C 0.17 1.23 8.93 -16.54 -0.15 1.09 16 27 N -0.58 -2.56 5.16 -9.00 -0.05 -2.60 16 28 H 0.42 0.12 8.70 -40.82 -0.35 -0.23 16 29 H 0.09 0.09 8.14 -51.93 -0.42 -0.33 16 30 H 0.08 0.02 8.12 -51.93 -0.42 -0.40 16 31 H 0.09 0.18 8.05 -51.93 -0.42 -0.24 16 32 H 0.15 1.34 8.06 -52.49 -0.42 0.92 16 33 H 0.09 1.35 6.97 -51.93 -0.36 0.98 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.07 1.13 8.09 -51.93 -0.42 0.70 16 37 H 0.03 0.58 8.06 -51.93 -0.42 0.16 16 38 H 0.03 0.63 7.53 -51.93 -0.39 0.24 16 39 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 40 H 0.07 1.84 7.11 -51.93 -0.37 1.47 16 41 H 0.02 0.58 8.09 -51.93 -0.42 0.16 16 42 H 0.09 1.64 7.95 -51.93 -0.41 1.23 16 43 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 44 H 0.08 0.85 5.27 -51.93 -0.27 0.58 16 45 H 0.07 0.78 7.60 -51.93 -0.39 0.39 16 46 H 0.17 0.78 7.76 -52.48 -0.41 0.37 16 LS Contribution 371.63 15.07 5.60 5.60 Total: -1.00 -40.05 371.63 -8.92 -48.97 By element: Atomic # 1 Polarization: 3.81 SS G_CDS: -6.72 Total: -2.92 kcal Atomic # 6 Polarization: 8.98 SS G_CDS: -2.37 Total: 6.61 kcal Atomic # 7 Polarization: -53.78 SS G_CDS: -0.57 Total: -54.35 kcal Atomic # 8 Polarization: -20.92 SS G_CDS: 0.17 Total: -20.75 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -40.05 -8.92 -48.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035831735.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.095 kcal (2) G-P(sol) polarization free energy of solvation -40.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.974 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds