Wall clock time and date at job start Tue Mar 31 2020 16:34:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.34859 * 119.09963 * 2 1 4 4 C 1.41673 * 119.33912 * 179.73724 * 3 2 1 5 5 O 1.22085 * 121.06999 * 180.25350 * 4 3 2 6 6 C 1.47103 * 117.86304 * 0.45977 * 4 3 2 7 7 C 1.47288 * 120.88226 * 179.81675 * 6 4 3 8 8 O 1.21617 * 119.99888 * 359.72612 * 7 6 4 9 9 N 1.34775 * 119.99901 * 179.71892 * 7 6 4 10 10 C 1.46499 * 119.99769 * 180.02562 * 9 7 6 11 11 H 1.09002 * 110.68322 * 32.01601 * 10 9 7 12 12 C 1.55478 * 110.75937 * 268.95471 * 10 9 7 13 13 C 1.55845 * 103.33102 * 241.51727 * 12 10 9 14 14 H 1.08999 * 116.12506 * 159.23857 * 13 12 10 15 15 C 1.55391 * 105.04240 * 288.04166 * 13 12 10 16 16 C 1.54855 * 103.48596 * 72.07637 * 15 13 12 17 17 C 1.55844 * 103.44596 * 359.87062 * 16 15 13 18 18 H 1.08995 * 115.56224 * 158.81213 * 17 16 15 19 19 N 1.50237 * 101.05382 * 32.93808 * 17 16 15 20 20 C 1.36941 * 130.84247 * 125.99256 * 19 17 16 21 21 H 1.08000 * 119.99268 * 0.02562 * 20 19 17 22 22 C 1.38811 * 120.00122 * 180.02562 * 20 19 17 23 23 N 1.31620 * 120.00113 * 359.72200 * 22 20 19 24 24 Si 1.86800 * 119.99570 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47161 * 60.00167 * 24 22 20 26 26 H 1.48505 * 109.46899 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.47265 * 299.99723 * 24 22 20 28 28 C 1.37997 * 118.23373 * 359.54689 * 6 4 3 29 29 N 1.34347 * 120.37159 * 0.22807 * 28 6 4 30 30 C 1.46496 * 118.80050 * 180.02562 * 29 28 6 31 31 H 1.08998 * 109.46703 * 264.09125 * 1 2 3 32 32 H 1.08997 * 109.47036 * 24.09204 * 1 2 3 33 33 H 1.09001 * 109.46859 * 144.09730 * 1 2 3 34 34 H 1.07993 * 120.32911 * 0.02562 * 3 2 1 35 35 H 0.97005 * 119.99756 * 0.02562 * 9 7 6 36 36 H 1.09000 * 110.60560 * 123.09641 * 12 10 9 37 37 H 1.09001 * 110.75763 * 0.02562 * 12 10 9 38 38 H 1.08995 * 110.71373 * 313.52214 * 15 13 12 39 39 H 1.08992 * 110.49579 * 190.52660 * 15 13 12 40 40 H 1.09002 * 110.62396 * 241.38107 * 16 15 13 41 41 H 1.09002 * 110.76299 * 118.42567 * 16 15 13 42 42 H 0.96998 * 120.00161 * 179.97438 * 23 22 20 43 43 H 1.08000 * 119.81160 * 180.24585 * 28 6 4 44 44 H 1.08998 * 109.46808 * 95.97547 * 30 29 28 45 45 H 1.09005 * 109.47011 * 215.97003 * 30 29 28 46 46 H 1.08993 * 109.47628 * 335.96956 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1629 1.1784 0.0000 4 6 3.5796 1.1843 0.0057 5 8 4.2053 2.2326 0.0105 6 6 4.2726 -0.1133 0.0009 7 6 5.7437 -0.1847 0.0023 8 8 6.4021 0.8378 0.0024 9 7 6.3602 -1.3832 0.0036 10 6 7.8235 -1.4542 0.0055 11 1 8.2492 -0.6090 0.5464 12 6 8.3745 -1.5080 -1.4473 13 6 9.1126 -2.8795 -1.5011 14 1 9.2778 -3.2970 -2.4944 15 6 10.3906 -2.6838 -0.6392 16 6 9.8450 -2.6322 0.8091 17 6 8.3069 -2.8009 0.6232 18 1 7.7625 -3.1494 1.5008 19 7 8.2591 -3.7021 -0.5780 20 6 7.6350 -4.9057 -0.7703 21 1 7.0594 -5.3492 0.0287 22 6 7.7422 -5.5558 -1.9921 23 7 8.4392 -5.0127 -2.9676 24 14 6.8902 -7.1973 -2.2545 25 1 5.4269 -7.0316 -2.0634 26 1 7.1574 -7.6788 -3.6337 27 1 7.4085 -8.1862 -1.2754 28 6 3.5077 -1.2619 0.0008 29 7 2.1664 -1.1848 0.0004 30 6 1.3881 -2.4259 0.0009 31 1 -0.3633 -0.1058 1.0222 32 1 -0.3633 0.9381 -0.4195 33 1 -0.3633 -0.8324 -0.6026 34 1 1.6136 2.1082 0.0004 35 1 5.8350 -2.1987 0.0032 36 1 9.0721 -0.6892 -1.6235 37 1 7.5596 -1.4814 -2.1708 38 1 10.8889 -1.7489 -0.8953 39 1 11.0683 -3.5282 -0.7643 40 1 10.0728 -1.6717 1.2713 41 1 10.2517 -3.4496 1.4046 42 1 8.5144 -5.4671 -3.8212 43 1 3.9900 -2.2282 0.0014 44 1 1.1042 -2.6762 1.0230 45 1 0.4906 -2.2922 -0.6031 46 1 1.9903 -3.2326 -0.4169 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001097273005.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:34:28 Heat of formation + Delta-G solvation = 17.936003 kcal Electronic energy + Delta-G solvation = -29111.264807 eV Core-core repulsion = 25196.044888 eV Total energy + Delta-G solvation = -3915.219919 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.27690 -39.55083 -38.32777 -37.43251 -33.90502 -33.38203 -32.71785 -32.34075 -29.14571 -29.06822 -28.43439 -27.25864 -27.00908 -24.35545 -24.13309 -22.21298 -21.11145 -20.03323 -19.76552 -18.72478 -17.91055 -17.54066 -16.98593 -16.27224 -16.21869 -15.75023 -15.42215 -14.83220 -14.49139 -14.35738 -14.00414 -13.89083 -13.74590 -13.60259 -13.35205 -13.22029 -13.15041 -12.72911 -12.57421 -12.14786 -12.02695 -12.00411 -11.80140 -11.17294 -11.10646 -10.97470 -10.94023 -10.46517 -10.32218 -10.16239 -9.89561 -9.69130 -9.58251 -9.34584 -9.18648 -9.00918 -8.87519 -8.34794 -7.94144 -6.96557 -5.77359 -3.16669 0.85395 1.24746 2.21431 3.27704 3.28516 3.34321 3.37036 3.67598 3.90951 4.05438 4.25752 4.35771 4.40582 4.56670 4.65491 4.89587 4.94243 5.03825 5.05574 5.16254 5.31503 5.34545 5.40911 5.60687 5.67906 5.70995 5.75347 5.90524 6.09948 6.17463 6.18632 6.32584 6.37855 6.45931 6.48390 6.57510 6.64904 6.67816 6.80827 6.88610 7.01224 7.21731 7.39404 7.43666 7.78795 8.14246 8.17259 8.25585 8.86602 9.03841 9.66978 10.50426 11.31290 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.011621 B = 0.004085 C = 0.003212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2408.760027 B = 6852.380769 C = 8714.119124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.154 3.846 3 C -0.273 4.273 4 C 0.408 3.592 5 O -0.482 6.482 6 C -0.293 4.293 7 C 0.567 3.433 8 O -0.522 6.522 9 N -0.711 5.711 10 C 0.132 3.868 11 H 0.081 0.919 12 C -0.142 4.142 13 C 0.154 3.846 14 H 0.152 0.848 15 C -0.139 4.139 16 C -0.128 4.128 17 C 0.125 3.875 18 H 0.087 0.913 19 N -0.592 5.592 20 C -0.215 4.215 21 H 0.076 0.924 22 C -0.010 4.010 23 N -0.918 5.918 24 Si 0.914 3.086 25 H -0.288 1.288 26 H -0.290 1.290 27 H -0.286 1.286 28 C 0.171 3.829 29 N -0.472 5.472 30 C 0.047 3.953 31 H 0.087 0.913 32 H 0.091 0.909 33 H 0.080 0.920 34 H 0.150 0.850 35 H 0.394 0.606 36 H 0.053 0.947 37 H 0.059 0.941 38 H 0.049 0.951 39 H 0.054 0.946 40 H 0.052 0.948 41 H 0.056 0.944 42 H 0.255 0.745 43 H 0.170 0.830 44 H 0.081 0.919 45 H 0.092 0.908 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.535 2.933 6.431 17.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.048 3.952 3 C -0.297 4.297 4 C 0.293 3.707 5 O -0.364 6.364 6 C -0.303 4.303 7 C 0.354 3.646 8 O -0.399 6.399 9 N -0.362 5.362 10 C 0.026 3.974 11 H 0.099 0.901 12 C -0.182 4.182 13 C 0.047 3.953 14 H 0.169 0.831 15 C -0.178 4.178 16 C -0.168 4.168 17 C 0.017 3.983 18 H 0.105 0.895 19 N -0.313 5.313 20 C -0.343 4.343 21 H 0.094 0.906 22 C -0.206 4.206 23 N -0.565 5.565 24 Si 0.745 3.255 25 H -0.215 1.215 26 H -0.216 1.216 27 H -0.213 1.213 28 C 0.041 3.959 29 N -0.159 5.159 30 C -0.094 4.094 31 H 0.106 0.894 32 H 0.110 0.890 33 H 0.099 0.901 34 H 0.168 0.832 35 H 0.228 0.772 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.068 0.932 39 H 0.073 0.927 40 H 0.071 0.929 41 H 0.075 0.925 42 H 0.065 0.935 43 H 0.187 0.813 44 H 0.100 0.900 45 H 0.111 0.889 46 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -15.921 3.798 6.239 17.517 hybrid contribution -0.717 -1.516 -0.140 1.682 sum -16.638 2.282 6.099 17.867 Atomic orbital electron populations 1.21175 0.88218 1.04959 1.03982 1.20253 0.94766 0.85090 0.95054 1.22256 0.96403 0.97062 1.13999 1.18162 0.88169 0.87975 0.76349 1.90808 1.69977 1.33242 1.42328 1.22666 0.94869 0.94878 1.17935 1.17481 0.85872 0.83984 0.77297 1.90809 1.65825 1.34078 1.49141 1.45904 1.08143 1.07140 1.75013 1.22679 0.78276 0.98648 0.97793 0.90131 1.23547 1.00052 0.99323 0.95317 1.23656 0.86836 0.87107 0.97689 0.83104 1.22993 0.99696 0.99363 0.95790 1.22886 0.96888 0.99561 0.97489 1.23169 0.94494 0.89312 0.91370 0.89545 1.46538 1.56951 1.19398 1.08418 1.18931 1.24035 0.93984 0.97377 0.90580 1.24700 1.00864 0.98892 0.96120 1.69463 1.44533 1.38575 1.03939 0.86170 0.78727 0.83534 0.77053 1.21528 1.21621 1.21315 1.22343 0.81988 1.00307 0.91246 1.42551 1.05362 1.07126 1.60832 1.22561 0.97885 0.84590 1.04363 0.89433 0.88983 0.90137 0.83234 0.77199 0.92809 0.92256 0.93231 0.92717 0.92935 0.92536 0.93473 0.81307 0.89994 0.88917 0.88466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.50 9.34 36.01 0.34 -0.16 16 2 C 0.15 1.31 6.64 -82.13 -0.55 0.77 16 3 C -0.27 -3.33 9.57 -39.47 -0.38 -3.71 16 4 C 0.41 7.18 6.97 -34.68 -0.24 6.94 16 5 O -0.48 -10.84 16.41 -15.17 -0.25 -11.09 16 6 C -0.29 -4.78 6.05 -102.71 -0.62 -5.40 16 7 C 0.57 11.20 7.77 -12.58 -0.10 11.11 16 8 O -0.52 -12.67 15.22 -14.75 -0.22 -12.89 16 9 N -0.71 -12.86 5.05 -52.18 -0.26 -13.12 16 10 C 0.13 2.59 2.82 -65.09 -0.18 2.41 16 11 H 0.08 1.63 7.23 -51.93 -0.38 1.26 16 12 C -0.14 -3.02 6.25 -23.90 -0.15 -3.17 16 13 C 0.15 3.51 4.69 -63.05 -0.30 3.21 16 14 H 0.15 3.94 5.52 -51.93 -0.29 3.66 16 15 C -0.14 -2.79 6.42 -24.48 -0.16 -2.95 16 16 C -0.13 -2.37 6.44 -24.24 -0.16 -2.52 16 17 C 0.13 2.44 5.06 -62.80 -0.32 2.12 16 18 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 19 N -0.59 -13.73 2.99 -146.08 -0.44 -14.17 16 20 C -0.22 -5.40 10.59 -15.06 -0.16 -5.56 16 21 H 0.08 1.81 7.83 -52.49 -0.41 1.40 16 22 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 23 N -0.92 -25.16 10.47 55.49 0.58 -24.58 16 24 Si 0.91 20.43 29.55 -169.99 -5.02 15.41 16 25 H -0.29 -6.20 7.11 56.52 0.40 -5.80 16 26 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 27 H -0.29 -6.41 7.11 56.52 0.40 -6.00 16 28 C 0.17 1.92 9.80 -16.54 -0.16 1.76 16 29 N -0.47 -3.88 2.97 -119.75 -0.36 -4.24 16 30 C 0.05 0.18 9.98 59.84 0.60 0.78 16 31 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.09 0.31 7.97 -51.93 -0.41 -0.10 16 33 H 0.08 0.18 6.00 -51.93 -0.31 -0.13 16 34 H 0.15 1.56 8.01 -52.49 -0.42 1.14 16 35 H 0.39 6.37 6.73 -40.82 -0.27 6.09 16 36 H 0.05 1.09 7.80 -51.93 -0.41 0.69 16 37 H 0.06 1.36 8.00 -51.93 -0.42 0.95 16 38 H 0.05 0.90 7.80 -51.93 -0.41 0.50 16 39 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.05 0.87 7.82 -51.93 -0.41 0.47 16 41 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 43 H 0.17 1.56 6.28 -52.49 -0.33 1.23 16 44 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 45 H 0.09 0.18 5.94 -51.93 -0.31 -0.13 16 46 H 0.10 0.34 7.86 -51.93 -0.41 -0.06 16 LS Contribution 367.68 15.07 5.54 5.54 Total: -1.00 -36.95 367.68 -9.48 -46.43 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -6.42 Total: 7.43 kcal Atomic # 6 Polarization: 7.91 SS G_CDS: -2.63 Total: 5.28 kcal Atomic # 7 Polarization: -55.62 SS G_CDS: -0.47 Total: -56.10 kcal Atomic # 8 Polarization: -23.51 SS G_CDS: -0.47 Total: -23.99 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -36.95 -9.48 -46.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097273005.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.363 kcal (2) G-P(sol) polarization free energy of solvation -36.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds