Wall clock time and date at job start Tue Mar 31 2020 17:38:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34772 * 119.99848 * 2 1 4 4 O 1.21552 * 120.00431 * 0.28103 * 3 2 1 5 5 C 1.47868 * 119.99631 * 180.02562 * 3 2 1 6 6 C 1.39696 * 120.47909 * 0.02562 * 5 3 2 7 7 N 1.31736 * 120.94002 * 180.02562 * 6 5 3 8 8 C 1.31723 * 122.07299 * 0.02562 * 7 6 5 9 9 C 1.39885 * 120.84462 * 0.02562 * 8 7 6 10 10 C 1.47232 * 120.51981 * 180.02562 * 9 8 7 11 11 C 1.34797 * 120.00184 * 43.40755 * 10 9 8 12 12 C 1.46423 * 119.99761 * 10.17539 * 11 10 9 13 13 O 1.21691 * 120.00399 * 6.62550 * 12 11 10 14 14 N 1.34778 * 120.00128 * 186.62212 * 12 11 10 15 15 C 1.46494 * 120.00408 * 174.78122 * 14 12 11 16 16 C 1.50706 * 109.47093 * 90.00272 * 15 14 12 17 17 H 1.08002 * 119.99690 * 359.97438 * 16 15 14 18 18 C 1.37878 * 119.99983 * 180.02562 * 16 15 14 19 19 N 1.31515 * 119.99574 * 179.97438 * 18 16 15 20 20 Si 1.86796 * 120.00090 * 0.02562 * 18 16 15 21 21 H 1.48498 * 109.47248 * 89.99836 * 20 18 16 22 22 H 1.48502 * 109.46896 * 210.00108 * 20 18 16 23 23 H 1.48501 * 109.47075 * 329.99644 * 20 18 16 24 24 C 1.46503 * 119.99594 * 354.78615 * 14 12 11 25 25 C 1.52998 * 109.47203 * 124.69422 * 24 14 12 26 26 C 1.53000 * 109.46833 * 244.69485 * 24 14 12 27 27 C 1.39668 * 120.47423 * 179.72914 * 5 3 2 28 28 H 1.09001 * 109.46935 * 299.99770 * 1 2 3 29 29 H 1.09000 * 109.47297 * 59.99035 * 1 2 3 30 30 H 1.09001 * 109.47212 * 180.02562 * 1 2 3 31 31 H 0.96996 * 119.99794 * 180.02562 * 2 1 3 32 32 H 1.07993 * 119.52820 * 0.02750 * 6 5 3 33 33 H 1.08008 * 119.57616 * 179.97438 * 8 7 6 34 34 H 1.08003 * 119.99448 * 223.40649 * 10 9 8 35 35 H 1.07997 * 120.00089 * 190.18143 * 11 10 9 36 36 H 1.09004 * 109.47342 * 210.00172 * 15 14 12 37 37 H 1.09001 * 109.47410 * 330.00350 * 15 14 12 38 38 H 0.96997 * 119.99663 * 179.97438 * 19 18 16 39 39 H 1.09000 * 109.47477 * 4.69387 * 24 14 12 40 40 H 1.09006 * 109.47104 * 60.00039 * 25 24 14 41 41 H 1.09000 * 109.47527 * 179.97438 * 25 24 14 42 42 H 1.08997 * 109.47257 * 299.99799 * 25 24 14 43 43 H 1.09000 * 109.47485 * 60.00341 * 26 24 14 44 44 H 1.09009 * 109.46887 * 180.02562 * 26 24 14 45 45 H 1.08998 * 109.47427 * 299.99546 * 26 24 14 46 46 H 1.07999 * 120.93655 * 0.02562 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5312 2.2199 0.0052 5 6 3.6176 1.1671 -0.0006 6 6 4.3261 -0.0368 -0.0017 7 7 5.6434 -0.0475 -0.0017 8 6 6.3518 1.0630 -0.0002 9 6 5.7251 2.3136 0.0020 10 6 6.5240 3.5503 0.0031 11 6 7.6014 3.6574 -0.7997 12 6 7.8512 2.6460 -1.8286 13 8 7.0263 1.7768 -2.0403 14 7 8.9947 2.6777 -2.5413 15 6 9.2970 1.6027 -3.4894 16 6 8.7390 1.9559 -4.8441 17 1 8.2116 2.8879 -4.9845 18 6 8.9010 1.0889 -5.9038 19 7 8.4137 1.3970 -7.0858 20 14 9.8114 -0.5239 -5.6603 21 1 8.8473 -1.5817 -5.2643 22 1 10.4787 -0.9120 -6.9290 23 1 10.8321 -0.3601 -4.5942 24 6 9.9354 3.7873 -2.3677 25 6 11.3151 3.2343 -2.0054 26 6 10.0310 4.5834 -3.6708 27 6 4.3259 2.3708 -0.0063 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5140 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.9500 -0.8400 -0.0004 32 1 3.7862 -0.9721 -0.0025 33 1 7.4305 1.0072 0.0002 34 1 6.2466 4.3717 0.6473 35 1 8.2805 4.4892 -0.6840 36 1 10.3772 1.4762 -3.5631 37 1 8.8453 0.6736 -3.1415 38 1 8.5279 0.7873 -7.8315 39 1 9.5841 4.4398 -1.5683 40 1 11.6664 2.5819 -2.8048 41 1 12.0152 4.0598 -1.8767 42 1 11.2470 2.6672 -1.0771 43 1 9.0480 4.9774 -3.9289 44 1 10.7313 5.4088 -3.5418 45 1 10.3823 3.9310 -4.4702 46 1 3.8092 3.3191 -0.0099 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491749540.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:35 Heat of formation + Delta-G solvation = 2.892736 kcal Electronic energy + Delta-G solvation = -28434.583119 eV Core-core repulsion = 24518.710875 eV Total energy + Delta-G solvation = -3915.872244 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.62282 -39.60842 -38.73446 -36.30576 -34.88309 -34.12701 -32.74176 -32.22305 -31.08218 -30.31719 -28.07476 -27.14045 -26.82501 -24.71057 -23.53949 -22.86140 -21.82181 -21.18380 -20.16011 -18.43379 -17.61869 -17.01559 -16.90980 -16.80745 -16.52013 -15.44541 -15.39576 -15.26928 -14.60536 -14.36704 -14.16120 -13.71858 -13.62401 -13.54583 -13.35573 -13.04021 -12.93348 -12.81720 -12.54050 -12.49536 -12.42432 -12.05370 -11.91757 -11.69665 -11.42520 -11.02309 -10.88501 -10.53630 -10.49910 -10.35747 -10.12258 -10.09812 -9.65387 -9.52719 -9.40111 -9.31606 -9.03939 -8.57649 -8.13345 -7.72800 -6.07719 -4.05290 0.58749 1.06626 1.84218 2.90184 3.00972 3.27984 3.33576 3.36534 3.67777 3.86034 3.99674 4.32563 4.39458 4.62691 4.75699 4.85240 4.89379 4.97353 5.01910 5.11498 5.25040 5.27576 5.35102 5.39087 5.46093 5.53956 5.58479 5.67763 5.90922 5.96491 6.02232 6.07909 6.13703 6.17802 6.24813 6.27988 6.38264 6.47753 6.67041 6.76987 6.93183 6.96142 7.25222 7.31177 7.61387 7.99583 8.07079 8.20603 8.46961 8.88063 8.97846 9.52491 11.05541 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.012198 B = 0.003492 C = 0.003020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2294.927454 B = 8016.370289 C = 9268.812128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.734 5.734 3 C 0.570 3.430 4 O -0.539 6.539 5 C -0.211 4.211 6 C 0.142 3.858 7 N -0.495 5.495 8 C 0.217 3.783 9 C -0.120 4.120 10 C -0.043 4.043 11 C -0.191 4.191 12 C 0.527 3.473 13 O -0.531 6.531 14 N -0.576 5.576 15 C 0.215 3.785 16 C -0.520 4.520 17 H 0.076 0.924 18 C 0.072 3.928 19 N -0.897 5.897 20 Si 0.872 3.128 21 H -0.274 1.274 22 H -0.286 1.286 23 H -0.266 1.266 24 C 0.130 3.870 25 C -0.163 4.163 26 C -0.159 4.159 27 C -0.002 4.002 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.076 0.924 31 H 0.402 0.598 32 H 0.150 0.850 33 H 0.152 0.848 34 H 0.138 0.862 35 H 0.137 0.863 36 H 0.033 0.967 37 H 0.034 0.966 38 H 0.264 0.736 39 H 0.081 0.919 40 H 0.067 0.933 41 H 0.062 0.938 42 H 0.054 0.946 43 H 0.055 0.945 44 H 0.050 0.950 45 H 0.082 0.918 46 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.300 1.364 18.131 18.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.386 5.386 3 C 0.357 3.643 4 O -0.417 6.417 5 C -0.216 4.216 6 C -0.015 4.015 7 N -0.205 5.205 8 C 0.060 3.940 9 C -0.122 4.122 10 C -0.064 4.064 11 C -0.212 4.212 12 C 0.316 3.684 13 O -0.411 6.411 14 N -0.305 5.305 15 C 0.094 3.906 16 C -0.559 4.559 17 H 0.094 0.906 18 C -0.130 4.130 19 N -0.536 5.536 20 Si 0.699 3.301 21 H -0.200 1.200 22 H -0.212 1.212 23 H -0.191 1.191 24 C 0.026 3.974 25 C -0.221 4.221 26 C -0.217 4.217 27 C -0.028 4.028 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.095 0.905 31 H 0.237 0.763 32 H 0.168 0.832 33 H 0.169 0.831 34 H 0.155 0.845 35 H 0.154 0.846 36 H 0.051 0.949 37 H 0.052 0.948 38 H 0.073 0.927 39 H 0.099 0.901 40 H 0.086 0.914 41 H 0.081 0.919 42 H 0.073 0.927 43 H 0.074 0.926 44 H 0.069 0.931 45 H 0.101 0.899 46 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -4.739 0.777 17.778 18.415 hybrid contribution 0.264 -0.356 -0.429 0.617 sum -4.475 0.421 17.349 17.922 Atomic orbital electron populations 1.21547 0.79192 1.02304 1.02465 1.45689 1.07916 1.08625 1.76403 1.18133 0.86901 0.83670 0.75556 1.90758 1.69935 1.31172 1.49834 1.20602 0.93437 0.95692 1.11917 1.22837 0.90504 0.96212 0.91969 1.67605 1.07298 1.31126 1.14426 1.22941 0.99822 0.86360 0.84897 1.19837 0.93369 0.95093 1.03911 1.22104 0.92576 0.94780 0.96938 1.23404 0.99107 1.01422 0.97270 1.18298 0.82080 0.85493 0.82510 1.90804 1.43562 1.38204 1.68508 1.48043 1.18547 1.23946 1.39999 1.19664 0.96170 0.86076 0.88655 1.21308 1.36148 1.06929 0.91511 0.90570 1.24850 0.95356 0.97710 0.95103 1.69895 1.45745 1.37101 1.00864 0.86913 0.80519 0.84925 0.77700 1.19994 1.21155 1.19115 1.21155 0.89661 0.88359 0.98262 1.22170 0.96406 1.01524 1.01980 1.22171 1.01753 0.99548 0.98269 1.21655 0.92394 0.98055 0.90664 0.92145 0.92039 0.90522 0.76316 0.83239 0.83094 0.84463 0.84562 0.94939 0.94779 0.92651 0.90081 0.91428 0.91937 0.92735 0.92588 0.93105 0.89919 0.83910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.71 10.70 59.85 0.64 1.35 16 2 N -0.73 -7.31 5.67 -68.03 -0.39 -7.69 16 3 C 0.57 7.91 7.78 -12.32 -0.10 7.82 16 4 O -0.54 -9.16 16.41 5.32 0.09 -9.08 16 5 C -0.21 -3.02 5.88 -104.88 -0.62 -3.63 16 6 C 0.14 1.96 10.71 -17.05 -0.18 1.78 16 7 N -0.50 -8.12 10.33 -12.51 -0.13 -8.25 16 8 C 0.22 3.54 7.72 -16.98 -0.13 3.41 16 9 C -0.12 -1.79 4.58 -104.95 -0.48 -2.27 16 10 C -0.04 -0.54 9.84 -37.15 -0.37 -0.90 16 11 C -0.19 -2.62 9.24 -37.51 -0.35 -2.96 16 12 C 0.53 10.05 6.64 -12.97 -0.09 9.96 16 13 O -0.53 -12.12 11.64 5.20 0.06 -12.06 16 14 N -0.58 -11.14 2.39 -169.10 -0.40 -11.54 16 15 C 0.21 5.03 3.75 -5.19 -0.02 5.01 16 16 C -0.52 -14.51 8.40 -34.44 -0.29 -14.80 16 17 H 0.08 2.35 7.84 -52.49 -0.41 1.94 16 18 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 19 N -0.90 -27.55 13.96 55.43 0.77 -26.78 16 20 Si 0.87 21.45 27.47 -169.99 -4.67 16.78 16 21 H -0.27 -6.87 7.11 56.52 0.40 -6.46 16 22 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 23 H -0.27 -6.11 6.54 56.52 0.37 -5.74 16 24 C 0.13 1.94 3.16 -67.93 -0.21 1.72 16 25 C -0.16 -2.12 9.08 37.16 0.34 -1.78 16 26 C -0.16 -2.57 8.60 37.16 0.32 -2.25 16 27 C 0.00 -0.03 9.48 -38.37 -0.36 -0.39 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.40 2.92 6.88 -40.82 -0.28 2.64 16 32 H 0.15 1.46 6.40 -52.49 -0.34 1.13 16 33 H 0.15 2.44 6.93 -52.48 -0.36 2.07 16 34 H 0.14 1.18 8.06 -52.48 -0.42 0.75 16 35 H 0.14 1.42 5.80 -52.49 -0.30 1.11 16 36 H 0.03 0.73 5.25 -51.93 -0.27 0.46 16 37 H 0.03 0.87 6.92 -51.93 -0.36 0.51 16 38 H 0.26 7.60 8.31 -40.82 -0.34 7.27 16 39 H 0.08 0.96 5.18 -51.93 -0.27 0.69 16 40 H 0.07 1.01 6.53 -51.93 -0.34 0.67 16 41 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 44 H 0.05 0.65 8.14 -51.92 -0.42 0.22 16 45 H 0.08 1.60 6.92 -51.93 -0.36 1.24 16 46 H 0.14 1.96 7.73 -52.49 -0.41 1.55 16 LS Contribution 375.41 15.07 5.66 5.66 Total: -1.00 -36.97 375.41 -7.25 -44.22 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -6.25 Total: 4.70 kcal Atomic # 6 Polarization: 6.03 SS G_CDS: -1.99 Total: 4.04 kcal Atomic # 7 Polarization: -54.12 SS G_CDS: -0.14 Total: -54.27 kcal Atomic # 8 Polarization: -21.28 SS G_CDS: 0.15 Total: -21.13 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.67 Total: 16.78 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -36.97 -7.25 -44.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491749540.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.116 kcal (2) G-P(sol) polarization free energy of solvation -36.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds