Wall clock time and date at job start Tue Mar 31 2020 17:38:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34772 * 119.99848 * 2 1 4 4 O 1.21552 * 120.00431 * 0.28103 * 3 2 1 5 5 C 1.47868 * 119.99631 * 180.02562 * 3 2 1 6 6 C 1.39696 * 120.47909 * 0.02562 * 5 3 2 7 7 N 1.31736 * 120.94002 * 180.02562 * 6 5 3 8 8 C 1.31723 * 122.07299 * 0.02562 * 7 6 5 9 9 C 1.39885 * 120.84462 * 0.02562 * 8 7 6 10 10 C 1.47232 * 120.51981 * 180.02562 * 9 8 7 11 11 C 1.34797 * 120.00184 * 43.40755 * 10 9 8 12 12 C 1.46423 * 119.99761 * 10.17539 * 11 10 9 13 13 O 1.21691 * 120.00399 * 6.62550 * 12 11 10 14 14 N 1.34778 * 120.00128 * 186.62212 * 12 11 10 15 15 C 1.46494 * 120.00408 * 174.78122 * 14 12 11 16 16 C 1.50706 * 109.47093 * 90.00272 * 15 14 12 17 17 H 1.08002 * 119.99690 * 359.97438 * 16 15 14 18 18 C 1.37878 * 119.99983 * 180.02562 * 16 15 14 19 19 N 1.31515 * 119.99574 * 179.97438 * 18 16 15 20 20 Si 1.86796 * 120.00090 * 0.02562 * 18 16 15 21 21 H 1.48498 * 109.47248 * 89.99836 * 20 18 16 22 22 H 1.48502 * 109.46896 * 210.00108 * 20 18 16 23 23 H 1.48501 * 109.47075 * 329.99644 * 20 18 16 24 24 C 1.46503 * 119.99594 * 354.78615 * 14 12 11 25 25 C 1.52998 * 109.47203 * 124.69422 * 24 14 12 26 26 C 1.53000 * 109.46833 * 244.69485 * 24 14 12 27 27 C 1.39668 * 120.47423 * 179.72914 * 5 3 2 28 28 H 1.09001 * 109.46935 * 299.99770 * 1 2 3 29 29 H 1.09000 * 109.47297 * 59.99035 * 1 2 3 30 30 H 1.09001 * 109.47212 * 180.02562 * 1 2 3 31 31 H 0.96996 * 119.99794 * 180.02562 * 2 1 3 32 32 H 1.07993 * 119.52820 * 0.02750 * 6 5 3 33 33 H 1.08008 * 119.57616 * 179.97438 * 8 7 6 34 34 H 1.08003 * 119.99448 * 223.40649 * 10 9 8 35 35 H 1.07997 * 120.00089 * 190.18143 * 11 10 9 36 36 H 1.09004 * 109.47342 * 210.00172 * 15 14 12 37 37 H 1.09001 * 109.47410 * 330.00350 * 15 14 12 38 38 H 0.96997 * 119.99663 * 179.97438 * 19 18 16 39 39 H 1.09000 * 109.47477 * 4.69387 * 24 14 12 40 40 H 1.09006 * 109.47104 * 60.00039 * 25 24 14 41 41 H 1.09000 * 109.47527 * 179.97438 * 25 24 14 42 42 H 1.08997 * 109.47257 * 299.99799 * 25 24 14 43 43 H 1.09000 * 109.47485 * 60.00341 * 26 24 14 44 44 H 1.09009 * 109.46887 * 180.02562 * 26 24 14 45 45 H 1.08998 * 109.47427 * 299.99546 * 26 24 14 46 46 H 1.07999 * 120.93655 * 0.02562 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5312 2.2199 0.0052 5 6 3.6176 1.1671 -0.0006 6 6 4.3261 -0.0368 -0.0017 7 7 5.6434 -0.0475 -0.0017 8 6 6.3518 1.0630 -0.0002 9 6 5.7251 2.3136 0.0020 10 6 6.5240 3.5503 0.0031 11 6 7.6014 3.6574 -0.7997 12 6 7.8512 2.6460 -1.8286 13 8 7.0263 1.7768 -2.0403 14 7 8.9947 2.6777 -2.5413 15 6 9.2970 1.6027 -3.4894 16 6 8.7390 1.9559 -4.8441 17 1 8.2116 2.8879 -4.9845 18 6 8.9010 1.0889 -5.9038 19 7 8.4137 1.3970 -7.0858 20 14 9.8114 -0.5239 -5.6603 21 1 8.8473 -1.5817 -5.2643 22 1 10.4787 -0.9120 -6.9290 23 1 10.8321 -0.3601 -4.5942 24 6 9.9354 3.7873 -2.3677 25 6 11.3151 3.2343 -2.0054 26 6 10.0310 4.5834 -3.6708 27 6 4.3259 2.3708 -0.0063 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5140 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.9500 -0.8400 -0.0004 32 1 3.7862 -0.9721 -0.0025 33 1 7.4305 1.0072 0.0002 34 1 6.2466 4.3717 0.6473 35 1 8.2805 4.4892 -0.6840 36 1 10.3772 1.4762 -3.5631 37 1 8.8453 0.6736 -3.1415 38 1 8.5279 0.7873 -7.8315 39 1 9.5841 4.4398 -1.5683 40 1 11.6664 2.5819 -2.8048 41 1 12.0152 4.0598 -1.8767 42 1 11.2470 2.6672 -1.0771 43 1 9.0480 4.9774 -3.9289 44 1 10.7313 5.4088 -3.5418 45 1 10.3823 3.9310 -4.4702 46 1 3.8092 3.3191 -0.0099 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491749540.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:35 Heat of formation + Delta-G solvation = -24.652095 kcal Electronic energy + Delta-G solvation = -28435.777552 eV Core-core repulsion = 24518.710875 eV Total energy + Delta-G solvation = -3917.066678 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -41.77022 -40.91735 -39.90839 -37.71129 -35.87457 -35.30588 -34.79389 -33.36780 -32.55674 -31.57146 -29.80007 -28.03094 -27.98100 -26.00616 -24.83194 -24.22737 -23.21701 -22.37724 -21.33720 -19.57755 -19.07121 -18.93538 -18.17853 -17.93636 -17.63616 -16.86410 -16.47679 -16.39095 -16.27769 -15.61545 -15.49829 -15.08492 -14.89581 -14.73629 -14.56834 -14.38278 -14.16022 -13.98746 -13.89054 -13.65416 -13.59479 -13.34390 -13.19942 -13.04471 -12.84698 -12.65582 -12.36461 -12.27288 -11.91763 -11.78312 -11.57338 -11.48708 -11.23938 -10.83006 -10.80424 -10.72085 -10.30114 -10.21314 -9.34604 -9.28938 -8.31440 -6.33267 -0.52628 -0.06209 0.72740 1.29442 1.33728 1.40991 1.80302 2.11991 2.28319 2.30366 2.50372 2.85862 3.03002 3.30321 3.58805 3.72862 3.79489 3.79968 3.88567 4.00160 4.25000 4.29080 4.30467 4.40825 4.53892 4.60627 4.67307 4.72898 4.87268 4.88420 4.89971 4.92349 4.93063 4.97571 5.06433 5.09618 5.22253 5.30026 5.38285 5.42791 5.48660 5.57085 5.59807 5.73535 6.28102 6.38248 6.67613 6.77822 6.88078 7.06753 7.25247 7.46034 8.85563 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.012198 B = 0.003492 C = 0.003020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2294.927454 B = 8016.370289 C = 9268.812128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.719 5.719 3 C 0.567 3.433 4 O -0.577 6.577 5 C -0.218 4.218 6 C 0.141 3.859 7 N -0.522 5.522 8 C 0.201 3.799 9 C -0.131 4.131 10 C -0.021 4.021 11 C -0.200 4.200 12 C 0.516 3.484 13 O -0.581 6.581 14 N -0.585 5.585 15 C 0.228 3.772 16 C -0.515 4.515 17 H 0.030 0.970 18 C 0.009 3.991 19 N -0.948 5.948 20 Si 0.940 3.060 21 H -0.281 1.281 22 H -0.277 1.277 23 H -0.237 1.237 24 C 0.123 3.877 25 C -0.157 4.157 26 C -0.154 4.154 27 C -0.014 4.014 28 H 0.058 0.942 29 H 0.049 0.951 30 H 0.115 0.885 31 H 0.416 0.584 32 H 0.186 0.814 33 H 0.144 0.856 34 H 0.186 0.814 35 H 0.178 0.822 36 H 0.049 0.951 37 H 0.013 0.987 38 H 0.265 0.735 39 H 0.124 0.876 40 H 0.042 0.958 41 H 0.096 0.904 42 H 0.066 0.934 43 H 0.031 0.969 44 H 0.091 0.909 45 H 0.040 0.960 46 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.436 1.522 20.868 21.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.370 5.370 3 C 0.354 3.646 4 O -0.458 6.458 5 C -0.223 4.223 6 C -0.017 4.017 7 N -0.231 5.231 8 C 0.044 3.956 9 C -0.133 4.133 10 C -0.041 4.041 11 C -0.220 4.220 12 C 0.307 3.693 13 O -0.463 6.463 14 N -0.314 5.314 15 C 0.105 3.895 16 C -0.554 4.554 17 H 0.048 0.952 18 C -0.188 4.188 19 N -0.589 5.589 20 Si 0.763 3.237 21 H -0.206 1.206 22 H -0.203 1.203 23 H -0.161 1.161 24 C 0.021 3.979 25 C -0.215 4.215 26 C -0.212 4.212 27 C -0.039 4.039 28 H 0.077 0.923 29 H 0.068 0.932 30 H 0.134 0.866 31 H 0.254 0.746 32 H 0.203 0.797 33 H 0.162 0.838 34 H 0.204 0.796 35 H 0.195 0.805 36 H 0.066 0.934 37 H 0.031 0.969 38 H 0.074 0.926 39 H 0.141 0.859 40 H 0.061 0.939 41 H 0.115 0.885 42 H 0.085 0.915 43 H 0.050 0.950 44 H 0.109 0.891 45 H 0.059 0.941 46 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -3.847 0.932 20.550 20.927 hybrid contribution -0.154 -0.378 -1.269 1.333 sum -4.001 0.553 19.281 19.699 Atomic orbital electron populations 1.21762 0.77697 1.04707 1.01800 1.45660 1.08926 1.08102 1.74345 1.18152 0.86719 0.84222 0.75505 1.90734 1.70432 1.32640 1.52012 1.20796 0.93974 0.95948 1.11589 1.23349 0.89855 0.97565 0.90890 1.67580 1.08539 1.31664 1.15335 1.22964 0.99749 0.87186 0.85688 1.20101 0.93744 0.95829 1.03604 1.22591 0.90703 0.94526 0.96244 1.23365 1.00902 1.01177 0.96576 1.19260 0.81063 0.85854 0.83101 1.90782 1.45040 1.40379 1.70128 1.48136 1.19903 1.24210 1.39175 1.19225 0.96254 0.86871 0.87115 1.21517 1.34950 1.04944 0.93968 0.95182 1.25788 0.96576 1.01791 0.94690 1.70057 1.48039 1.38837 1.02008 0.85832 0.79670 0.79465 0.78706 1.20649 1.20281 1.16050 1.21548 0.90186 0.87494 0.98651 1.22139 0.95499 1.02431 1.01450 1.22110 1.01150 1.00168 0.97783 1.21885 0.92594 0.98759 0.90683 0.92306 0.93229 0.86605 0.74638 0.79722 0.83831 0.79648 0.80526 0.93359 0.96881 0.92600 0.85861 0.93925 0.88504 0.91545 0.95024 0.89051 0.94110 0.83164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.19 10.70 127.77 1.37 2.56 16 2 N -0.72 -13.16 5.67 -487.44 -2.76 -15.92 16 3 C 0.57 15.40 7.78 86.79 0.68 16.08 16 4 O -0.58 -19.61 16.41 -3.88 -0.06 -19.68 16 5 C -0.22 -6.14 5.88 -20.03 -0.12 -6.26 16 6 C 0.14 3.79 10.71 85.06 0.91 4.70 16 7 N -0.52 -17.19 10.33 -193.49 -2.00 -19.19 16 8 C 0.20 6.61 7.72 85.11 0.66 7.27 16 9 C -0.13 -3.79 4.58 -20.08 -0.09 -3.88 16 10 C -0.02 -0.45 9.84 23.85 0.23 -0.22 16 11 C -0.20 -4.95 9.24 23.61 0.22 -4.73 16 12 C 0.52 19.53 6.64 86.37 0.57 20.11 16 13 O -0.58 -27.21 11.64 -4.32 -0.05 -27.26 16 14 N -0.59 -22.51 2.39 -807.13 -1.93 -24.44 16 15 C 0.23 10.87 3.75 85.64 0.32 11.19 16 16 C -0.52 -30.03 8.40 25.60 0.22 -29.82 16 17 H 0.03 1.97 7.84 -2.91 -0.02 1.95 16 18 C 0.01 0.52 5.47 84.65 0.46 0.98 16 19 N -0.95 -60.83 13.96 21.45 0.30 -60.53 16 20 Si 0.94 45.15 27.47 68.60 1.88 47.04 16 21 H -0.28 -13.70 7.11 99.48 0.71 -12.99 16 22 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 23 H -0.24 -10.18 6.54 99.48 0.65 -9.53 16 24 C 0.12 3.42 3.16 44.99 0.14 3.56 16 25 C -0.16 -3.62 9.08 71.98 0.65 -2.97 16 26 C -0.15 -4.87 8.60 71.98 0.62 -4.25 16 27 C -0.01 -0.39 9.48 23.05 0.22 -0.17 16 28 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.12 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.42 5.09 6.88 -92.71 -0.64 4.45 16 32 H 0.19 3.31 6.40 -2.91 -0.02 3.29 16 33 H 0.14 4.75 6.93 -2.91 -0.02 4.73 16 34 H 0.19 2.27 8.06 -2.91 -0.02 2.25 16 35 H 0.18 2.81 5.80 -2.91 -0.02 2.79 16 36 H 0.05 2.15 5.25 -2.38 -0.01 2.14 16 37 H 0.01 0.68 6.92 -2.39 -0.02 0.67 16 38 H 0.27 15.91 8.31 -92.71 -0.77 15.14 16 39 H 0.12 2.38 5.18 -2.39 -0.01 2.37 16 40 H 0.04 1.19 6.53 -2.38 -0.02 1.17 16 41 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 43 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 44 H 0.09 2.09 8.14 -2.38 -0.02 2.07 16 45 H 0.04 1.61 6.92 -2.39 -0.02 1.60 16 46 H 0.15 4.03 7.73 -2.91 -0.02 4.01 16 Total: -1.00 -88.24 375.41 2.76 -85.47 By element: Atomic # 1 Polarization: 20.06 SS G_CDS: 0.32 Total: 20.39 kcal Atomic # 6 Polarization: 7.07 SS G_CDS: 7.06 Total: 14.13 kcal Atomic # 7 Polarization: -113.69 SS G_CDS: -6.39 Total: -120.08 kcal Atomic # 8 Polarization: -46.83 SS G_CDS: -0.11 Total: -46.94 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 1.88 Total: 47.04 kcal Total: -88.24 2.76 -85.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491749540.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.820 kcal (2) G-P(sol) polarization free energy of solvation -88.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds