Wall clock time and date at job start Tue Mar 31 2020 17:27:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46900 * 2 1 4 4 H 1.09002 * 109.47148 * 55.00340 * 3 2 1 5 5 C 1.52999 * 109.47227 * 174.99864 * 3 2 1 6 6 N 1.46500 * 109.47462 * 175.00214 * 5 3 2 7 7 C 1.34776 * 120.00273 * 180.02562 * 6 5 3 8 8 O 1.21641 * 119.99883 * 359.97438 * 7 6 5 9 9 C 1.47053 * 119.99930 * 180.02562 * 7 6 5 10 10 C 1.35880 * 125.42540 * 179.97438 * 9 7 6 11 11 C 1.41590 * 107.74704 * 180.02562 * 10 9 7 12 12 C 1.40138 * 133.28969 * 180.02562 * 11 10 9 13 13 C 1.37845 * 119.67208 * 179.97438 * 12 11 10 14 14 O 1.35991 * 119.81752 * 179.97438 * 13 12 11 15 15 C 1.42899 * 116.99657 * 179.97438 * 14 13 12 16 16 C 1.39378 * 120.35973 * 0.02562 * 13 12 11 17 17 C 1.37595 * 120.60110 * 0.02562 * 16 13 12 18 18 C 1.39211 * 120.02446 * 359.96012 * 17 16 13 19 19 N 1.37675 * 133.02888 * 180.02562 * 18 17 16 20 20 H 0.96997 * 125.61799 * 359.73180 * 19 18 17 21 21 N 1.46498 * 109.47394 * 295.00360 * 3 2 1 22 22 C 1.36941 * 120.00137 * 84.99945 * 21 3 2 23 23 H 1.07997 * 119.99665 * 359.97438 * 22 21 3 24 24 C 1.38809 * 120.00064 * 180.02562 * 22 21 3 25 25 N 1.31620 * 119.99813 * 180.02562 * 24 22 21 26 26 Si 1.86801 * 119.99826 * 359.97438 * 24 22 21 27 27 H 1.48503 * 109.46868 * 90.00220 * 26 24 22 28 28 H 1.48498 * 109.46953 * 209.99952 * 26 24 22 29 29 H 1.48494 * 109.47438 * 330.00105 * 26 24 22 30 30 H 1.09004 * 109.46757 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46707 * 299.99518 * 1 2 3 32 32 H 1.08988 * 109.47466 * 59.99879 * 1 2 3 33 33 H 1.09000 * 109.46707 * 240.00482 * 2 1 3 34 34 H 1.09002 * 109.47622 * 120.00032 * 2 1 3 35 35 H 1.09003 * 109.46838 * 55.00543 * 5 3 2 36 36 H 1.09003 * 109.47776 * 295.00391 * 5 3 2 37 37 H 0.97006 * 119.99898 * 359.97438 * 6 5 3 38 38 H 1.07993 * 126.12653 * 0.05329 * 10 9 7 39 39 H 1.08002 * 120.16574 * 0.02562 * 12 11 10 40 40 H 1.09005 * 109.46729 * 60.00233 * 15 14 13 41 41 H 1.08995 * 109.47232 * 180.02562 * 15 14 13 42 42 H 1.09001 * 109.47347 * 300.00348 * 15 14 13 43 43 H 1.08000 * 119.70016 * 180.02562 * 16 13 12 44 44 H 1.08007 * 119.98977 * 180.02562 * 17 16 13 45 45 H 0.96999 * 120.00041 * 264.99557 * 21 3 2 46 46 H 0.97004 * 119.99847 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5648 1.4444 0.1258 6 7 4.0630 2.8169 0.0060 7 6 5.3857 3.0631 0.0859 8 8 6.1658 2.1457 0.2579 9 6 5.8856 4.4408 -0.0337 10 6 7.1908 4.8134 0.0305 11 6 7.2466 6.2193 -0.1284 12 6 8.3003 7.1429 -0.1495 13 6 8.0299 8.4827 -0.3280 14 8 9.0502 9.3816 -0.3484 15 6 8.7016 10.7544 -0.5378 16 6 6.7165 8.9213 -0.4867 17 6 5.6719 8.0259 -0.4671 18 6 5.9216 6.6681 -0.2884 19 7 5.1033 5.5626 -0.2264 20 1 4.1363 5.5706 -0.3025 21 7 1.6523 2.0975 -1.2517 22 6 0.4155 2.6735 -1.3687 23 1 -0.2743 2.6445 -0.5382 24 6 0.0480 3.2937 -2.5549 25 7 -1.1406 3.8478 -2.6671 26 14 1.2410 3.3432 -3.9915 27 1 1.0382 2.1449 -4.8448 28 1 0.9989 4.5690 -4.7939 29 1 2.6342 3.3551 -3.4778 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5138 -0.8899 33 1 1.8933 -0.5138 -0.8901 34 1 1.8935 -0.5138 0.8900 35 1 3.9954 0.8313 -0.6660 36 1 3.8500 1.0378 1.0960 37 1 3.4409 3.5484 -0.1315 38 1 8.0344 4.1552 0.1762 39 1 9.3193 6.8065 -0.0272 40 1 8.0433 11.0767 0.2690 41 1 9.6059 11.3627 -0.5343 42 1 8.1895 10.8708 -1.4930 43 1 6.5169 9.9734 -0.6262 44 1 4.6579 8.3765 -0.5914 45 1 2.2718 2.1233 -1.9977 46 1 -1.3976 4.2809 -3.4962 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753484588.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:14 Heat of formation + Delta-G solvation = -6.389270 kcal Electronic energy + Delta-G solvation = -27668.552771 eV Core-core repulsion = 23752.278029 eV Total energy + Delta-G solvation = -3916.274742 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.68959 -39.75371 -39.01259 -36.97466 -35.75546 -34.01843 -32.48004 -32.30580 -30.39104 -29.60023 -29.46390 -27.99498 -27.07177 -24.61052 -23.21689 -22.43971 -22.03415 -21.09393 -20.39416 -19.91733 -18.69637 -17.88597 -17.61964 -17.08482 -15.99741 -15.93170 -15.73456 -15.64921 -15.06012 -14.75431 -14.24351 -14.10339 -13.93761 -13.85926 -13.39332 -13.34876 -13.21780 -12.98453 -12.89264 -12.86889 -12.57818 -12.22837 -12.12969 -11.66876 -11.27138 -11.08216 -10.93830 -10.82103 -10.73970 -10.50368 -10.40920 -10.13725 -10.05194 -10.01273 -9.59596 -9.09958 -9.00212 -8.15268 -7.72127 -7.46409 -5.92416 -3.29169 0.58511 1.46961 2.00967 2.81051 3.05973 3.23660 3.26164 3.29062 3.35349 3.35843 3.68929 4.43969 4.48553 4.67178 4.75887 4.83090 4.89784 4.98448 5.08787 5.15724 5.19606 5.19794 5.25787 5.33799 5.38786 5.65832 5.71243 5.79060 5.81930 5.83101 5.92910 6.04042 6.15595 6.18382 6.27608 6.34910 6.42186 6.50339 6.52543 6.62433 6.74359 6.85366 7.21870 7.22751 7.27990 7.58642 7.83156 8.17017 8.25769 9.03350 9.75678 9.94861 11.24937 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.013496 B = 0.002952 C = 0.002555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.190790 B = 9483.985670 C =10957.181565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.132 4.132 3 C 0.167 3.833 4 H 0.063 0.937 5 C 0.111 3.889 6 N -0.712 5.712 7 C 0.578 3.422 8 O -0.530 6.530 9 C 0.035 3.965 10 C -0.121 4.121 11 C -0.079 4.079 12 C -0.104 4.104 13 C 0.093 3.907 14 O -0.320 6.320 15 C 0.029 3.971 16 C -0.168 4.168 17 C -0.089 4.089 18 C 0.084 3.916 19 N -0.574 5.574 20 H 0.423 0.577 21 N -0.748 5.748 22 C -0.245 4.245 23 H 0.095 0.905 24 C 0.009 3.991 25 N -0.929 5.929 26 Si 0.879 3.121 27 H -0.284 1.284 28 H -0.292 1.292 29 H -0.279 1.279 30 H 0.033 0.967 31 H 0.042 0.958 32 H 0.088 0.912 33 H 0.056 0.944 34 H 0.047 0.953 35 H 0.068 0.932 36 H 0.073 0.927 37 H 0.406 0.594 38 H 0.157 0.843 39 H 0.133 0.867 40 H 0.053 0.947 41 H 0.097 0.903 42 H 0.053 0.947 43 H 0.133 0.867 44 H 0.129 0.871 45 H 0.362 0.638 46 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.816 8.797 6.334 19.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.173 4.173 3 C 0.058 3.942 4 H 0.081 0.919 5 C -0.013 4.013 6 N -0.363 5.363 7 C 0.363 3.637 8 O -0.407 6.407 9 C -0.075 4.075 10 C -0.148 4.148 11 C -0.084 4.084 12 C -0.124 4.124 13 C 0.048 3.952 14 O -0.234 6.234 15 C -0.067 4.067 16 C -0.188 4.188 17 C -0.109 4.109 18 C -0.025 4.025 19 N -0.179 5.179 20 H 0.262 0.738 21 N -0.391 5.391 22 C -0.374 4.374 23 H 0.113 0.887 24 C -0.188 4.188 25 N -0.576 5.576 26 Si 0.709 3.291 27 H -0.210 1.210 28 H -0.218 1.218 29 H -0.205 1.205 30 H 0.052 0.948 31 H 0.061 0.939 32 H 0.106 0.894 33 H 0.074 0.926 34 H 0.066 0.934 35 H 0.086 0.914 36 H 0.091 0.909 37 H 0.241 0.759 38 H 0.174 0.826 39 H 0.151 0.849 40 H 0.072 0.928 41 H 0.115 0.885 42 H 0.072 0.928 43 H 0.150 0.850 44 H 0.147 0.853 45 H 0.195 0.805 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 16.138 8.125 6.513 19.206 hybrid contribution -0.396 0.656 -1.411 1.605 sum 15.743 8.781 5.102 18.734 Atomic orbital electron populations 1.21780 0.95141 0.99803 1.03763 1.22030 0.97401 0.97645 1.00244 1.20568 0.89653 0.93223 0.90793 0.91884 1.21816 0.95705 0.81852 1.01916 1.45932 1.06644 1.11287 1.72421 1.17215 0.82680 0.86299 0.77490 1.90823 1.56070 1.43956 1.49877 1.20282 0.91492 0.86671 1.09090 1.20794 0.95137 0.93192 1.05697 1.17834 0.91753 0.93342 1.05501 1.19661 0.98774 0.89027 1.04905 1.18551 0.86547 0.89462 1.00650 1.86068 1.32132 1.16817 1.88407 1.23009 1.02587 0.80234 1.00840 1.20963 0.91433 0.99934 1.06484 1.19904 0.99585 0.89075 1.02357 1.18262 0.90125 0.88615 1.05544 1.42041 1.09057 1.04477 1.62339 0.73833 1.42856 1.16866 1.67706 1.11718 1.19050 0.90638 1.27819 0.99923 0.88691 1.24660 0.96337 1.00317 0.97453 1.69689 1.19231 1.41923 1.26744 0.86662 0.80915 0.77498 0.83984 1.21017 1.21828 1.20524 0.94775 0.93867 0.89369 0.92567 0.93424 0.91407 0.90922 0.75859 0.82581 0.84945 0.92799 0.88475 0.92797 0.84971 0.85325 0.80523 0.92949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.54 9.18 37.16 0.34 -2.20 16 2 C -0.13 -2.09 5.61 -26.73 -0.15 -2.24 16 3 C 0.17 2.78 2.59 -67.93 -0.18 2.61 16 4 H 0.06 1.08 8.08 -51.93 -0.42 0.66 16 5 C 0.11 1.67 5.23 -4.04 -0.02 1.65 16 6 N -0.71 -10.67 5.38 -61.50 -0.33 -11.00 16 7 C 0.58 9.11 7.80 -12.69 -0.10 9.01 16 8 O -0.53 -9.67 16.84 5.24 0.09 -9.58 16 9 C 0.04 0.51 6.97 -82.30 -0.57 -0.07 16 10 C -0.12 -1.66 10.53 -39.15 -0.41 -2.07 16 11 C -0.08 -1.05 6.16 -106.93 -0.66 -1.71 16 12 C -0.10 -1.25 10.04 -39.01 -0.39 -1.64 16 13 C 0.09 1.05 6.67 -39.30 -0.26 0.79 16 14 O -0.32 -3.32 10.49 -19.71 -0.21 -3.53 16 15 C 0.03 0.18 9.81 101.05 0.99 1.17 16 16 C -0.17 -1.70 9.01 -39.39 -0.35 -2.06 16 17 C -0.09 -0.97 10.06 -39.45 -0.40 -1.37 16 18 C 0.08 1.08 7.25 -83.91 -0.61 0.47 16 19 N -0.57 -7.33 6.08 -7.33 -0.04 -7.38 16 20 H 0.42 4.79 8.12 -40.82 -0.33 4.46 16 21 N -0.75 -15.22 4.31 -53.43 -0.23 -15.45 16 22 C -0.24 -6.02 8.24 -15.06 -0.12 -6.14 16 23 H 0.10 2.53 7.55 -52.49 -0.40 2.13 16 24 C 0.01 0.23 5.50 -17.43 -0.10 0.14 16 25 N -0.93 -27.08 13.97 55.49 0.78 -26.30 16 26 Si 0.88 20.72 27.74 -169.99 -4.71 16.00 16 27 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 28 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 29 H -0.28 -6.20 6.52 56.52 0.37 -5.83 16 30 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.09 1.84 5.99 -51.94 -0.31 1.53 16 33 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.41 5.93 7.19 -40.82 -0.29 5.64 16 38 H 0.16 1.95 8.06 -52.49 -0.42 1.53 16 39 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 40 H 0.05 0.29 7.65 -51.93 -0.40 -0.11 16 41 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.05 0.30 7.65 -51.93 -0.40 -0.10 16 43 H 0.13 0.99 6.26 -52.49 -0.33 0.66 16 44 H 0.13 1.16 8.06 -52.48 -0.42 0.74 16 45 H 0.36 7.56 5.66 -40.82 -0.23 7.33 16 46 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 379.80 15.07 5.72 5.72 Total: -1.00 -30.93 379.80 -8.43 -39.37 By element: Atomic # 1 Polarization: 22.30 SS G_CDS: -6.50 Total: 15.79 kcal Atomic # 6 Polarization: -0.66 SS G_CDS: -2.99 Total: -3.65 kcal Atomic # 7 Polarization: -60.30 SS G_CDS: 0.17 Total: -60.13 kcal Atomic # 8 Polarization: -12.99 SS G_CDS: -0.12 Total: -13.11 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -4.71 Total: 16.00 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -30.93 -8.43 -39.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753484588.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.977 kcal (2) G-P(sol) polarization free energy of solvation -30.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds