Wall clock time and date at job start Tue Mar 31 2020 17:27:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46900 * 2 1 4 4 H 1.09002 * 109.47148 * 55.00340 * 3 2 1 5 5 C 1.52999 * 109.47227 * 174.99864 * 3 2 1 6 6 N 1.46500 * 109.47462 * 175.00214 * 5 3 2 7 7 C 1.34776 * 120.00273 * 180.02562 * 6 5 3 8 8 O 1.21641 * 119.99883 * 359.97438 * 7 6 5 9 9 C 1.47053 * 119.99930 * 180.02562 * 7 6 5 10 10 C 1.35880 * 125.42540 * 179.97438 * 9 7 6 11 11 C 1.41590 * 107.74704 * 180.02562 * 10 9 7 12 12 C 1.40138 * 133.28969 * 180.02562 * 11 10 9 13 13 C 1.37845 * 119.67208 * 179.97438 * 12 11 10 14 14 O 1.35991 * 119.81752 * 179.97438 * 13 12 11 15 15 C 1.42899 * 116.99657 * 179.97438 * 14 13 12 16 16 C 1.39378 * 120.35973 * 0.02562 * 13 12 11 17 17 C 1.37595 * 120.60110 * 0.02562 * 16 13 12 18 18 C 1.39211 * 120.02446 * 359.96012 * 17 16 13 19 19 N 1.37675 * 133.02888 * 180.02562 * 18 17 16 20 20 H 0.96997 * 125.61799 * 359.73180 * 19 18 17 21 21 N 1.46498 * 109.47394 * 295.00360 * 3 2 1 22 22 C 1.36941 * 120.00137 * 84.99945 * 21 3 2 23 23 H 1.07997 * 119.99665 * 359.97438 * 22 21 3 24 24 C 1.38809 * 120.00064 * 180.02562 * 22 21 3 25 25 N 1.31620 * 119.99813 * 180.02562 * 24 22 21 26 26 Si 1.86801 * 119.99826 * 359.97438 * 24 22 21 27 27 H 1.48503 * 109.46868 * 90.00220 * 26 24 22 28 28 H 1.48498 * 109.46953 * 209.99952 * 26 24 22 29 29 H 1.48494 * 109.47438 * 330.00105 * 26 24 22 30 30 H 1.09004 * 109.46757 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46707 * 299.99518 * 1 2 3 32 32 H 1.08988 * 109.47466 * 59.99879 * 1 2 3 33 33 H 1.09000 * 109.46707 * 240.00482 * 2 1 3 34 34 H 1.09002 * 109.47622 * 120.00032 * 2 1 3 35 35 H 1.09003 * 109.46838 * 55.00543 * 5 3 2 36 36 H 1.09003 * 109.47776 * 295.00391 * 5 3 2 37 37 H 0.97006 * 119.99898 * 359.97438 * 6 5 3 38 38 H 1.07993 * 126.12653 * 0.05329 * 10 9 7 39 39 H 1.08002 * 120.16574 * 0.02562 * 12 11 10 40 40 H 1.09005 * 109.46729 * 60.00233 * 15 14 13 41 41 H 1.08995 * 109.47232 * 180.02562 * 15 14 13 42 42 H 1.09001 * 109.47347 * 300.00348 * 15 14 13 43 43 H 1.08000 * 119.70016 * 180.02562 * 16 13 12 44 44 H 1.08007 * 119.98977 * 180.02562 * 17 16 13 45 45 H 0.96999 * 120.00041 * 264.99557 * 21 3 2 46 46 H 0.97004 * 119.99847 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5648 1.4444 0.1258 6 7 4.0630 2.8169 0.0060 7 6 5.3857 3.0631 0.0859 8 8 6.1658 2.1457 0.2579 9 6 5.8856 4.4408 -0.0337 10 6 7.1908 4.8134 0.0305 11 6 7.2466 6.2193 -0.1284 12 6 8.3003 7.1429 -0.1495 13 6 8.0299 8.4827 -0.3280 14 8 9.0502 9.3816 -0.3484 15 6 8.7016 10.7544 -0.5378 16 6 6.7165 8.9213 -0.4867 17 6 5.6719 8.0259 -0.4671 18 6 5.9216 6.6681 -0.2884 19 7 5.1033 5.5626 -0.2264 20 1 4.1363 5.5706 -0.3025 21 7 1.6523 2.0975 -1.2517 22 6 0.4155 2.6735 -1.3687 23 1 -0.2743 2.6445 -0.5382 24 6 0.0480 3.2937 -2.5549 25 7 -1.1406 3.8478 -2.6671 26 14 1.2410 3.3432 -3.9915 27 1 1.0382 2.1449 -4.8448 28 1 0.9989 4.5690 -4.7939 29 1 2.6342 3.3551 -3.4778 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5138 -0.8899 33 1 1.8933 -0.5138 -0.8901 34 1 1.8935 -0.5138 0.8900 35 1 3.9954 0.8313 -0.6660 36 1 3.8500 1.0378 1.0960 37 1 3.4409 3.5484 -0.1315 38 1 8.0344 4.1552 0.1762 39 1 9.3193 6.8065 -0.0272 40 1 8.0433 11.0767 0.2690 41 1 9.6059 11.3627 -0.5343 42 1 8.1895 10.8708 -1.4930 43 1 6.5169 9.9734 -0.6262 44 1 4.6579 8.3765 -0.5914 45 1 2.2718 2.1233 -1.9977 46 1 -1.3976 4.2809 -3.4962 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753484588.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:13 Heat of formation + Delta-G solvation = -27.096748 kcal Electronic energy + Delta-G solvation = -27669.450715 eV Core-core repulsion = 23752.278029 eV Total energy + Delta-G solvation = -3917.172686 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.65543 -40.77327 -39.99276 -38.43317 -36.62226 -35.42382 -34.20694 -33.24792 -32.10121 -30.64448 -30.39537 -29.23160 -27.69474 -25.91442 -24.77650 -23.66251 -23.03027 -22.04113 -21.78617 -21.11432 -19.94647 -19.28493 -18.62265 -18.12678 -17.18499 -17.01766 -16.69399 -16.61857 -16.35665 -16.02621 -15.69620 -15.20404 -15.01605 -14.88041 -14.68577 -14.66584 -14.46309 -14.19544 -14.13917 -14.06436 -13.71888 -13.13758 -12.98662 -12.91773 -12.87632 -12.76664 -12.34983 -12.14938 -11.93639 -11.71248 -11.62496 -11.52007 -11.44167 -11.36516 -10.96541 -10.94717 -10.24594 -9.32330 -9.10098 -8.61312 -7.97859 -5.29994 -0.37452 0.57910 0.98550 1.35559 1.39541 1.44934 1.82098 2.02133 2.21419 2.46242 2.48326 2.79262 3.34025 3.53278 3.64160 3.67769 3.84501 3.95465 4.02310 4.27079 4.30292 4.36349 4.42893 4.43560 4.47677 4.49953 4.54578 4.69714 4.77959 4.80625 4.82662 5.00158 5.05261 5.06880 5.09964 5.18837 5.30446 5.32149 5.41136 5.51099 5.58016 5.72132 5.81003 5.85672 6.24669 6.27285 6.43354 6.51481 6.95708 7.10660 7.85151 8.03507 9.23018 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.013496 B = 0.002952 C = 0.002555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.190790 B = 9483.985670 C =10957.181565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.128 4.128 3 C 0.168 3.832 4 H 0.062 0.938 5 C 0.118 3.882 6 N -0.709 5.709 7 C 0.582 3.418 8 O -0.559 6.559 9 C 0.017 3.983 10 C -0.123 4.123 11 C -0.097 4.097 12 C -0.119 4.119 13 C 0.091 3.909 14 O -0.336 6.336 15 C 0.018 3.982 16 C -0.160 4.160 17 C -0.094 4.094 18 C 0.072 3.928 19 N -0.570 5.570 20 H 0.427 0.573 21 N -0.747 5.747 22 C -0.204 4.204 23 H 0.071 0.929 24 C -0.056 4.056 25 N -0.981 5.981 26 Si 0.938 3.062 27 H -0.291 1.291 28 H -0.304 1.304 29 H -0.256 1.256 30 H 0.053 0.947 31 H 0.042 0.958 32 H 0.045 0.955 33 H 0.056 0.944 34 H 0.081 0.919 35 H 0.066 0.934 36 H 0.091 0.909 37 H 0.408 0.592 38 H 0.161 0.839 39 H 0.139 0.861 40 H 0.065 0.935 41 H 0.116 0.884 42 H 0.063 0.937 43 H 0.162 0.838 44 H 0.149 0.851 45 H 0.362 0.638 46 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.488 9.499 6.835 21.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.168 4.168 3 C 0.059 3.941 4 H 0.080 0.920 5 C -0.006 4.006 6 N -0.360 5.360 7 C 0.368 3.632 8 O -0.438 6.438 9 C -0.094 4.094 10 C -0.150 4.150 11 C -0.101 4.101 12 C -0.139 4.139 13 C 0.046 3.954 14 O -0.250 6.250 15 C -0.077 4.077 16 C -0.179 4.179 17 C -0.115 4.115 18 C -0.037 4.037 19 N -0.176 5.176 20 H 0.267 0.733 21 N -0.390 5.390 22 C -0.334 4.334 23 H 0.089 0.911 24 C -0.248 4.248 25 N -0.632 5.632 26 Si 0.768 3.232 27 H -0.218 1.218 28 H -0.231 1.231 29 H -0.181 1.181 30 H 0.072 0.928 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.099 0.901 35 H 0.084 0.916 36 H 0.109 0.891 37 H 0.244 0.756 38 H 0.178 0.822 39 H 0.157 0.843 40 H 0.084 0.916 41 H 0.135 0.865 42 H 0.082 0.918 43 H 0.180 0.820 44 H 0.167 0.833 45 H 0.195 0.805 46 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 17.847 8.808 7.048 21.113 hybrid contribution -0.859 0.507 -1.446 1.756 sum 16.988 9.315 5.602 20.168 Atomic orbital electron populations 1.21694 0.96372 1.00453 1.01608 1.21963 0.96105 0.96877 1.01888 1.20719 0.90959 0.93550 0.88822 0.91971 1.21751 0.93957 0.81978 1.02868 1.45904 1.06548 1.11356 1.72164 1.17325 0.82476 0.86589 0.76761 1.90801 1.56664 1.44939 1.51400 1.20084 0.91892 0.86441 1.10964 1.20966 0.95196 0.93791 1.05090 1.17960 0.92471 0.93255 1.06434 1.19819 0.98949 0.89594 1.05538 1.18708 0.87343 0.89505 0.99883 1.86059 1.32307 1.18432 1.88221 1.23330 1.04187 0.78337 1.01810 1.21314 0.90635 1.01323 1.04652 1.20214 1.00934 0.88324 1.01998 1.18572 0.90023 0.89346 1.05800 1.41969 1.09208 1.04133 1.62247 0.73287 1.42844 1.15302 1.67682 1.13217 1.18955 0.91187 1.24971 0.98336 0.91133 1.25239 0.97752 1.01669 1.00109 1.69842 1.21545 1.44634 1.27172 0.85679 0.80241 0.76338 0.80929 1.21827 1.23088 1.18117 0.92827 0.93848 0.93546 0.92564 0.90089 0.91576 0.89123 0.75642 0.82186 0.84314 0.91600 0.86548 0.91797 0.82022 0.83334 0.80478 0.93694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.77 9.18 71.98 0.66 -4.11 16 2 C -0.13 -3.71 5.61 30.59 0.17 -3.54 16 3 C 0.17 5.26 2.59 44.99 0.12 5.38 16 4 H 0.06 2.01 8.08 -2.39 -0.02 1.99 16 5 C 0.12 3.29 5.23 86.38 0.45 3.74 16 6 N -0.71 -20.21 5.38 -466.73 -2.51 -22.72 16 7 C 0.58 17.81 7.80 86.56 0.67 18.49 16 8 O -0.56 -19.93 16.84 -4.16 -0.07 -20.00 16 9 C 0.02 0.48 6.97 39.92 0.28 0.75 16 10 C -0.12 -3.34 10.53 22.55 0.24 -3.10 16 11 C -0.10 -2.49 6.16 -21.36 -0.13 -2.62 16 12 C -0.12 -2.77 10.04 22.64 0.23 -2.55 16 13 C 0.09 1.90 6.67 22.45 0.15 2.05 16 14 O -0.34 -6.29 10.49 -93.45 -0.98 -7.27 16 15 C 0.02 0.17 9.81 113.37 1.11 1.28 16 16 C -0.16 -2.81 9.01 22.39 0.20 -2.61 16 17 C -0.09 -1.87 10.06 22.35 0.22 -1.64 16 18 C 0.07 1.77 7.25 39.09 0.28 2.05 16 19 N -0.57 -14.07 6.08 -177.11 -1.08 -15.15 16 20 H 0.43 9.29 8.12 -92.71 -0.75 8.53 16 21 N -0.75 -29.51 4.31 -322.95 -1.39 -30.90 16 22 C -0.20 -10.03 8.24 84.03 0.69 -9.34 16 23 H 0.07 3.82 7.55 -2.91 -0.02 3.80 16 24 C -0.06 -3.03 5.50 84.86 0.47 -2.56 16 25 N -0.98 -58.77 13.97 21.65 0.30 -58.47 16 26 Si 0.94 43.06 27.74 68.60 1.90 44.96 16 27 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 28 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 29 H -0.26 -10.61 6.52 99.48 0.65 -9.96 16 30 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.05 1.92 5.99 -2.39 -0.01 1.91 16 33 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 37 H 0.41 11.37 7.19 -92.70 -0.67 10.70 16 38 H 0.16 4.03 8.06 -2.91 -0.02 4.00 16 39 H 0.14 2.88 8.06 -2.91 -0.02 2.86 16 40 H 0.07 0.50 7.65 -2.38 -0.02 0.48 16 41 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 42 H 0.06 0.51 7.65 -2.39 -0.02 0.49 16 43 H 0.16 1.81 6.26 -2.91 -0.02 1.79 16 44 H 0.15 2.28 8.06 -2.91 -0.02 2.26 16 45 H 0.36 14.48 5.66 -92.71 -0.52 13.95 16 46 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 Total: -1.00 -67.52 379.80 1.02 -66.50 By element: Atomic # 1 Polarization: 42.33 SS G_CDS: -0.97 Total: 41.36 kcal Atomic # 6 Polarization: -4.14 SS G_CDS: 5.82 Total: 1.68 kcal Atomic # 7 Polarization: -122.55 SS G_CDS: -4.68 Total: -127.23 kcal Atomic # 8 Polarization: -26.22 SS G_CDS: -1.05 Total: -27.27 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 1.90 Total: 44.96 kcal Total: -67.52 1.02 -66.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753484588.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.404 kcal (2) G-P(sol) polarization free energy of solvation -67.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds