Wall clock time and date at job start Tue Mar 31 2020 16:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.46870 * 2 1 4 4 N 1.46508 * 109.47066 * 179.97438 * 3 2 1 5 5 C 1.36871 * 119.99635 * 318.10590 * 4 3 2 6 6 H 1.08001 * 120.00498 * 41.18064 * 5 4 3 7 7 C 1.39054 * 119.99530 * 221.17500 * 5 4 3 8 8 N 1.31366 * 119.99788 * 72.13664 * 7 5 4 9 9 Si 1.86803 * 119.99993 * 252.13095 * 7 5 4 10 10 H 1.48503 * 109.47006 * 64.93001 * 9 7 5 11 11 H 1.48501 * 109.46880 * 184.92553 * 9 7 5 12 12 H 1.48499 * 109.47213 * 304.92796 * 9 7 5 13 13 C 1.34769 * 119.99821 * 138.10506 * 4 3 2 14 14 O 1.21592 * 120.00205 * 163.08168 * 13 4 3 15 15 C 1.47738 * 120.00299 * 343.08337 * 13 4 3 16 16 C 1.39686 * 120.11771 * 323.64207 * 15 13 4 17 17 C 1.37958 * 119.99248 * 180.02562 * 16 15 13 18 18 C 1.38275 * 120.22649 * 359.73211 * 17 16 15 19 19 C 1.38965 * 120.23506 * 0.54909 * 18 17 16 20 20 N 1.39970 * 119.99486 * 179.72420 * 19 18 17 21 21 C 1.34776 * 119.99886 * 215.55056 * 20 19 18 22 22 O 1.21589 * 120.00212 * 355.65127 * 21 20 19 23 23 N 1.34775 * 119.99741 * 175.65033 * 21 20 19 24 24 C 1.46507 * 119.99763 * 180.02562 * 23 21 20 25 25 C 1.53001 * 117.49942 * 223.46944 * 24 23 21 26 26 C 1.53003 * 117.49803 * 154.80812 * 24 23 21 27 27 C 1.38610 * 120.00667 * 359.44781 * 19 18 17 28 28 H 1.08996 * 109.47191 * 59.99668 * 1 2 3 29 29 H 1.09003 * 109.47060 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47018 * 299.99843 * 1 2 3 31 31 H 1.08999 * 109.47018 * 240.00157 * 2 1 3 32 32 H 1.09003 * 109.46953 * 120.00028 * 2 1 3 33 33 H 1.09008 * 109.47004 * 60.00426 * 3 2 1 34 34 H 1.08996 * 109.47485 * 300.00153 * 3 2 1 35 35 H 0.97004 * 119.99881 * 184.93520 * 8 7 5 36 36 H 1.08000 * 120.00636 * 0.02562 * 16 15 13 37 37 H 1.07992 * 119.88728 * 180.02562 * 17 16 15 38 38 H 1.07997 * 119.88410 * 180.28986 * 18 17 16 39 39 H 0.97003 * 120.00204 * 35.56060 * 20 19 18 40 40 H 0.97001 * 120.00750 * 359.72440 * 23 21 20 41 41 H 1.08999 * 115.54720 * 9.14228 * 24 23 21 42 42 H 1.08998 * 117.49546 * 0.02562 * 25 24 23 43 43 H 1.08991 * 117.49920 * 145.02244 * 25 24 23 44 44 H 1.08998 * 117.49795 * 214.97949 * 26 24 23 45 45 H 1.09004 * 117.49847 * 359.97438 * 26 24 23 46 46 H 1.07997 * 120.11186 * 180.25360 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1890 0.5603 0.7926 6 1 3.8493 -0.4610 0.8815 7 6 5.3213 0.9791 1.4826 8 7 5.2010 1.7764 2.5197 9 14 7.0134 0.4078 0.9348 10 1 7.3071 0.9533 -0.4148 11 1 8.0350 0.8923 1.8976 12 1 7.0432 -1.0760 0.8863 13 6 4.1791 2.3113 -0.7786 14 8 5.3555 2.5330 -0.5653 15 6 3.4888 2.9943 -1.8920 16 6 2.5175 2.3185 -2.6344 17 6 1.8749 2.9587 -3.6739 18 6 2.1848 4.2707 -3.9813 19 6 3.1537 4.9501 -3.2527 20 7 3.4674 6.2763 -3.5720 21 6 4.7367 6.7147 -3.4575 22 8 5.5942 5.9825 -3.0024 23 7 5.0556 7.9647 -3.8477 24 6 6.4355 8.4411 -3.7238 25 6 6.6484 9.8563 -3.1825 26 6 6.8837 9.5604 -4.6658 27 6 3.8053 4.3164 -2.2063 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.6766 1.9563 0.8901 34 1 1.6766 1.9564 -0.8899 35 1 5.9931 2.1259 2.9572 36 1 2.2696 1.2951 -2.3947 37 1 1.1239 2.4348 -4.2464 38 1 1.6750 4.7679 -4.7932 39 1 2.7713 6.8798 -3.8755 40 1 4.3725 8.5475 -4.2145 41 1 7.1721 7.6837 -3.4558 42 1 5.7618 10.4326 -2.9181 43 1 7.5252 10.0299 -2.5588 44 1 7.9153 9.5394 -5.0173 45 1 6.1521 9.9419 -5.3781 46 1 4.5556 4.8441 -1.6363 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000056485602.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:24 Heat of formation + Delta-G solvation = 25.628054 kcal Electronic energy + Delta-G solvation = -28410.418838 eV Core-core repulsion = 24495.532472 eV Total energy + Delta-G solvation = -3914.886367 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.63460 -39.22955 -37.89810 -37.00204 -35.06542 -34.57608 -32.96454 -32.73331 -31.43082 -30.45290 -29.09560 -25.82291 -24.96085 -23.48336 -22.69299 -22.62268 -21.66208 -20.89946 -20.59503 -19.70499 -18.59298 -17.68729 -16.59764 -16.19869 -15.96723 -15.38155 -15.18345 -14.95793 -14.74618 -14.40930 -14.32579 -14.01177 -13.81565 -13.39644 -13.13756 -12.94968 -12.75209 -12.50640 -12.23266 -11.95269 -11.86865 -11.83901 -11.58199 -11.38488 -11.17883 -11.02610 -10.89038 -10.79310 -10.54708 -10.29813 -10.23656 -10.00146 -9.88332 -9.74150 -8.99143 -8.48717 -8.35353 -7.99628 -7.75585 -7.56329 -6.45209 -3.52765 1.45276 1.73797 2.40098 2.99855 3.51903 3.62219 3.67331 3.81887 3.91750 3.94315 4.31514 4.48818 4.60830 4.66959 4.70987 4.92473 5.03133 5.20109 5.29339 5.30333 5.48275 5.54187 5.60678 5.61911 5.64088 5.74039 5.76130 5.81695 5.89355 6.04040 6.11521 6.27484 6.31109 6.39004 6.40827 6.46404 6.48517 6.65519 6.75549 6.87826 6.90212 7.01256 7.05811 7.35837 7.54334 7.79959 8.30748 8.47760 8.97186 9.26597 9.66800 10.29755 10.38623 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.011428 B = 0.003690 C = 0.002954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2449.470674 B = 7585.424705 C = 9476.202939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.128 4.128 3 C 0.089 3.911 4 N -0.418 5.418 5 C -0.468 4.468 6 H 0.093 0.907 7 C 0.175 3.825 8 N -0.746 5.746 9 Si 0.857 3.143 10 H -0.257 1.257 11 H -0.300 1.300 12 H -0.283 1.283 13 C 0.478 3.522 14 O -0.553 6.553 15 C -0.074 4.074 16 C -0.113 4.113 17 C -0.112 4.112 18 C -0.147 4.147 19 C 0.147 3.853 20 N -0.684 5.684 21 C 0.701 3.299 22 O -0.554 6.554 23 N -0.716 5.716 24 C 0.102 3.898 25 C -0.195 4.195 26 C -0.191 4.191 27 C -0.078 4.078 28 H 0.048 0.952 29 H 0.048 0.952 30 H 0.051 0.949 31 H 0.058 0.942 32 H 0.076 0.924 33 H 0.046 0.954 34 H 0.072 0.928 35 H 0.270 0.730 36 H 0.132 0.868 37 H 0.124 0.876 38 H 0.119 0.881 39 H 0.403 0.597 40 H 0.396 0.604 41 H 0.142 0.858 42 H 0.096 0.904 43 H 0.103 0.897 44 H 0.104 0.896 45 H 0.096 0.904 46 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.385 13.021 -13.762 20.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.167 4.167 3 C -0.034 4.034 4 N -0.137 5.137 5 C -0.585 4.585 6 H 0.110 0.890 7 C -0.052 4.052 8 N -0.370 5.370 9 Si 0.681 3.319 10 H -0.181 1.181 11 H -0.227 1.227 12 H -0.209 1.209 13 C 0.268 3.732 14 O -0.437 6.437 15 C -0.078 4.078 16 C -0.132 4.132 17 C -0.130 4.130 18 C -0.168 4.168 19 C 0.053 3.947 20 N -0.331 5.331 21 C 0.401 3.599 22 O -0.428 6.428 23 N -0.370 5.370 24 C -0.005 4.005 25 C -0.234 4.234 26 C -0.230 4.230 27 C -0.100 4.100 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.094 0.906 33 H 0.065 0.935 34 H 0.089 0.911 35 H 0.081 0.919 36 H 0.150 0.850 37 H 0.142 0.858 38 H 0.137 0.863 39 H 0.238 0.762 40 H 0.230 0.770 41 H 0.159 0.841 42 H 0.114 0.886 43 H 0.121 0.879 44 H 0.122 0.878 45 H 0.114 0.886 46 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -6.988 12.537 -12.969 19.344 hybrid contribution 0.040 0.696 -0.564 0.897 sum -6.947 13.233 -13.533 20.162 Atomic orbital electron populations 1.21739 0.96741 1.00863 1.01215 1.21694 0.93965 0.97983 1.03015 1.21972 0.84331 0.96410 1.00710 1.43183 1.02845 1.32326 1.35355 1.18222 1.13744 0.91740 1.34828 0.88976 1.25076 1.01046 0.91076 0.87962 1.70786 1.33035 1.23829 1.09377 0.87416 0.84227 0.78191 0.82091 1.18143 1.22701 1.20916 1.18097 0.86753 0.84943 0.83439 1.90583 1.16752 1.64059 1.72285 1.20442 0.95505 0.93860 0.98012 1.21450 0.95607 1.00620 0.95509 1.20769 1.00496 0.94029 0.97742 1.20773 1.00794 0.95159 1.00079 1.17337 0.98535 0.83397 0.95453 1.42439 1.08409 1.11360 1.70941 1.15911 0.82822 0.81959 0.79183 1.91070 1.47735 1.54959 1.48994 1.44430 1.10219 1.13800 1.68548 1.21467 0.84198 0.91540 1.03304 1.23468 1.03947 0.99538 0.96488 1.23414 1.03097 1.03076 0.93410 1.21390 0.99154 0.94426 0.94993 0.93313 0.93253 0.93012 0.92360 0.90559 0.93537 0.91051 0.91898 0.85045 0.85760 0.86279 0.76234 0.77036 0.84078 0.88566 0.87854 0.87801 0.88605 0.83860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 9.91 37.16 0.37 -1.66 16 2 C -0.13 -2.28 5.34 -26.73 -0.14 -2.42 16 3 C 0.09 1.82 5.05 -4.04 -0.02 1.80 16 4 N -0.42 -10.79 2.89 -115.92 -0.33 -11.13 16 5 C -0.47 -13.21 8.43 -15.00 -0.13 -13.33 16 6 H 0.09 2.55 6.67 -52.49 -0.35 2.20 16 7 C 0.17 5.11 3.79 -17.45 -0.07 5.04 16 8 N -0.75 -21.98 13.95 55.50 0.77 -21.21 16 9 Si 0.86 23.36 27.91 -169.99 -4.74 18.62 16 10 H -0.26 -7.59 6.78 56.52 0.38 -7.21 16 11 H -0.30 -7.99 7.11 56.52 0.40 -7.59 16 12 H -0.28 -7.37 7.11 56.52 0.40 -6.97 16 13 C 0.48 12.82 7.10 -12.38 -0.09 12.74 16 14 O -0.55 -17.18 13.31 5.28 0.07 -17.11 16 15 C -0.07 -1.61 5.23 -104.99 -0.55 -2.16 16 16 C -0.11 -1.97 7.37 -39.14 -0.29 -2.26 16 17 C -0.11 -1.55 10.02 -39.67 -0.40 -1.94 16 18 C -0.15 -1.95 9.96 -39.30 -0.39 -2.34 16 19 C 0.15 2.34 6.28 -83.73 -0.53 1.81 16 20 N -0.68 -8.59 5.34 -14.26 -0.08 -8.66 16 21 C 0.70 10.36 8.40 -86.92 -0.73 9.63 16 22 O -0.55 -11.34 13.39 5.29 0.07 -11.27 16 23 N -0.72 -7.35 5.57 -58.67 -0.33 -7.68 16 24 C 0.10 1.04 6.43 -67.92 -0.44 0.60 16 25 C -0.20 -1.54 10.46 -26.69 -0.28 -1.82 16 26 C -0.19 -1.37 10.46 -26.69 -0.28 -1.65 16 27 C -0.08 -1.63 8.26 -38.96 -0.32 -1.95 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.06 1.02 8.08 -51.93 -0.42 0.60 16 32 H 0.08 1.51 6.80 -51.93 -0.35 1.15 16 33 H 0.05 1.00 8.14 -51.92 -0.42 0.57 16 34 H 0.07 1.30 4.11 -51.93 -0.21 1.09 16 35 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 36 H 0.13 2.22 6.54 -52.49 -0.34 1.87 16 37 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 38 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 39 H 0.40 3.20 8.84 -40.82 -0.36 2.84 16 40 H 0.40 2.58 8.85 -40.82 -0.36 2.22 16 41 H 0.14 1.79 7.40 -51.93 -0.38 1.41 16 42 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 43 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.14 3.45 6.24 -52.49 -0.33 3.12 16 LS Contribution 378.95 15.07 5.71 5.71 Total: -1.00 -37.30 378.95 -9.63 -46.92 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -6.49 Total: 5.70 kcal Atomic # 6 Polarization: 4.38 SS G_CDS: -4.28 Total: 0.10 kcal Atomic # 7 Polarization: -48.71 SS G_CDS: 0.04 Total: -48.67 kcal Atomic # 8 Polarization: -28.52 SS G_CDS: 0.14 Total: -28.38 kcal Atomic # 14 Polarization: 23.36 SS G_CDS: -4.74 Total: 18.62 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -37.30 -9.63 -46.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000056485602.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.553 kcal (2) G-P(sol) polarization free energy of solvation -37.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.925 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds