Wall clock time and date at job start Tue Mar 31 2020 16:08:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.46870 * 2 1 4 4 N 1.46508 * 109.47066 * 179.97438 * 3 2 1 5 5 C 1.36871 * 119.99635 * 318.10590 * 4 3 2 6 6 H 1.08001 * 120.00498 * 41.18064 * 5 4 3 7 7 C 1.39054 * 119.99530 * 221.17500 * 5 4 3 8 8 N 1.31366 * 119.99788 * 72.13664 * 7 5 4 9 9 Si 1.86803 * 119.99993 * 252.13095 * 7 5 4 10 10 H 1.48503 * 109.47006 * 64.93001 * 9 7 5 11 11 H 1.48501 * 109.46880 * 184.92553 * 9 7 5 12 12 H 1.48499 * 109.47213 * 304.92796 * 9 7 5 13 13 C 1.34769 * 119.99821 * 138.10506 * 4 3 2 14 14 O 1.21592 * 120.00205 * 163.08168 * 13 4 3 15 15 C 1.47738 * 120.00299 * 343.08337 * 13 4 3 16 16 C 1.39686 * 120.11771 * 323.64207 * 15 13 4 17 17 C 1.37958 * 119.99248 * 180.02562 * 16 15 13 18 18 C 1.38275 * 120.22649 * 359.73211 * 17 16 15 19 19 C 1.38965 * 120.23506 * 0.54909 * 18 17 16 20 20 N 1.39970 * 119.99486 * 179.72420 * 19 18 17 21 21 C 1.34776 * 119.99886 * 215.55056 * 20 19 18 22 22 O 1.21589 * 120.00212 * 355.65127 * 21 20 19 23 23 N 1.34775 * 119.99741 * 175.65033 * 21 20 19 24 24 C 1.46507 * 119.99763 * 180.02562 * 23 21 20 25 25 C 1.53001 * 117.49942 * 223.46944 * 24 23 21 26 26 C 1.53003 * 117.49803 * 154.80812 * 24 23 21 27 27 C 1.38610 * 120.00667 * 359.44781 * 19 18 17 28 28 H 1.08996 * 109.47191 * 59.99668 * 1 2 3 29 29 H 1.09003 * 109.47060 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47018 * 299.99843 * 1 2 3 31 31 H 1.08999 * 109.47018 * 240.00157 * 2 1 3 32 32 H 1.09003 * 109.46953 * 120.00028 * 2 1 3 33 33 H 1.09008 * 109.47004 * 60.00426 * 3 2 1 34 34 H 1.08996 * 109.47485 * 300.00153 * 3 2 1 35 35 H 0.97004 * 119.99881 * 184.93520 * 8 7 5 36 36 H 1.08000 * 120.00636 * 0.02562 * 16 15 13 37 37 H 1.07992 * 119.88728 * 180.02562 * 17 16 15 38 38 H 1.07997 * 119.88410 * 180.28986 * 18 17 16 39 39 H 0.97003 * 120.00204 * 35.56060 * 20 19 18 40 40 H 0.97001 * 120.00750 * 359.72440 * 23 21 20 41 41 H 1.08999 * 115.54720 * 9.14228 * 24 23 21 42 42 H 1.08998 * 117.49546 * 0.02562 * 25 24 23 43 43 H 1.08991 * 117.49920 * 145.02244 * 25 24 23 44 44 H 1.08998 * 117.49795 * 214.97949 * 26 24 23 45 45 H 1.09004 * 117.49847 * 359.97438 * 26 24 23 46 46 H 1.07997 * 120.11186 * 180.25360 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1890 0.5603 0.7926 6 1 3.8493 -0.4610 0.8815 7 6 5.3213 0.9791 1.4826 8 7 5.2010 1.7764 2.5197 9 14 7.0134 0.4078 0.9348 10 1 7.3071 0.9533 -0.4148 11 1 8.0350 0.8923 1.8976 12 1 7.0432 -1.0760 0.8863 13 6 4.1791 2.3113 -0.7786 14 8 5.3555 2.5330 -0.5653 15 6 3.4888 2.9943 -1.8920 16 6 2.5175 2.3185 -2.6344 17 6 1.8749 2.9587 -3.6739 18 6 2.1848 4.2707 -3.9813 19 6 3.1537 4.9501 -3.2527 20 7 3.4674 6.2763 -3.5720 21 6 4.7367 6.7147 -3.4575 22 8 5.5942 5.9825 -3.0024 23 7 5.0556 7.9647 -3.8477 24 6 6.4355 8.4411 -3.7238 25 6 6.6484 9.8563 -3.1825 26 6 6.8837 9.5604 -4.6658 27 6 3.8053 4.3164 -2.2063 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.6766 1.9563 0.8901 34 1 1.6766 1.9564 -0.8899 35 1 5.9931 2.1259 2.9572 36 1 2.2696 1.2951 -2.3947 37 1 1.1239 2.4348 -4.2464 38 1 1.6750 4.7679 -4.7932 39 1 2.7713 6.8798 -3.8755 40 1 4.3725 8.5475 -4.2145 41 1 7.1721 7.6837 -3.4558 42 1 5.7618 10.4326 -2.9181 43 1 7.5252 10.0299 -2.5588 44 1 7.9153 9.5394 -5.0173 45 1 6.1521 9.9419 -5.3781 46 1 4.5556 4.8441 -1.6363 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000056485602.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:22 Heat of formation + Delta-G solvation = -2.092142 kcal Electronic energy + Delta-G solvation = -28411.620876 eV Core-core repulsion = 24495.532472 eV Total energy + Delta-G solvation = -3916.088405 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.83920 -40.82148 -39.26030 -38.07927 -36.95000 -35.88728 -34.81010 -33.88818 -33.13885 -31.91199 -30.37422 -27.63226 -26.65539 -24.62437 -24.16960 -23.29796 -22.69721 -22.17129 -21.95956 -21.48381 -19.75276 -19.23628 -18.10071 -17.62186 -17.28891 -16.85914 -16.61276 -16.51855 -16.20661 -15.90981 -15.77137 -15.41240 -15.24231 -14.87973 -14.61319 -14.41843 -14.03146 -14.00115 -13.72688 -13.64836 -13.19827 -13.07640 -12.86833 -12.61286 -12.57789 -12.41702 -12.39554 -12.29901 -12.15311 -11.90361 -11.60363 -11.50323 -11.37999 -11.11567 -10.59985 -10.12688 -9.88381 -9.78246 -9.71789 -9.05268 -8.64815 -5.74278 0.09137 0.40082 1.26902 1.38107 1.40465 1.59087 1.86366 2.10635 2.27855 2.71153 2.93346 2.97969 3.04375 3.18672 3.76277 3.95439 4.03495 4.04216 4.05622 4.22061 4.22145 4.31874 4.39472 4.50208 4.58471 4.64115 4.72553 4.73749 4.80186 4.86571 4.98447 5.03674 5.11464 5.18535 5.27010 5.29037 5.32229 5.37344 5.43954 5.45347 5.48362 5.59597 5.64017 5.88745 6.05562 6.16982 6.83662 6.92842 7.17871 7.42336 7.57102 8.12854 8.25147 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.011428 B = 0.003690 C = 0.002954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2449.470674 B = 7585.424705 C = 9476.202939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.120 4.120 3 C 0.089 3.911 4 N -0.430 5.430 5 C -0.484 4.484 6 H 0.093 0.907 7 C 0.148 3.852 8 N -0.775 5.775 9 Si 0.890 3.110 10 H -0.299 1.299 11 H -0.292 1.292 12 H -0.259 1.259 13 C 0.464 3.536 14 O -0.614 6.614 15 C -0.110 4.110 16 C -0.114 4.114 17 C -0.089 4.089 18 C -0.115 4.115 19 C 0.149 3.851 20 N -0.664 5.664 21 C 0.693 3.307 22 O -0.620 6.620 23 N -0.692 5.692 24 C 0.060 3.940 25 C -0.186 4.186 26 C -0.160 4.160 27 C -0.108 4.108 28 H 0.073 0.927 29 H 0.067 0.933 30 H 0.050 0.950 31 H 0.061 0.939 32 H 0.047 0.953 33 H 0.031 0.969 34 H 0.101 0.899 35 H 0.272 0.728 36 H 0.137 0.863 37 H 0.180 0.820 38 H 0.178 0.822 39 H 0.430 0.570 40 H 0.418 0.582 41 H 0.103 0.897 42 H 0.111 0.889 43 H 0.102 0.898 44 H 0.111 0.889 45 H 0.120 0.880 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.450 14.468 -17.767 26.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.159 4.159 3 C -0.033 4.033 4 N -0.149 5.149 5 C -0.603 4.603 6 H 0.111 0.889 7 C -0.076 4.076 8 N -0.401 5.401 9 Si 0.716 3.284 10 H -0.227 1.227 11 H -0.219 1.219 12 H -0.184 1.184 13 C 0.256 3.744 14 O -0.501 6.501 15 C -0.114 4.114 16 C -0.134 4.134 17 C -0.107 4.107 18 C -0.135 4.135 19 C 0.054 3.946 20 N -0.315 5.315 21 C 0.393 3.607 22 O -0.499 6.499 23 N -0.347 5.347 24 C -0.046 4.046 25 C -0.225 4.225 26 C -0.199 4.199 27 C -0.130 4.130 28 H 0.092 0.908 29 H 0.086 0.914 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.066 0.934 33 H 0.049 0.951 34 H 0.119 0.881 35 H 0.083 0.917 36 H 0.155 0.845 37 H 0.197 0.803 38 H 0.195 0.805 39 H 0.270 0.730 40 H 0.256 0.744 41 H 0.121 0.879 42 H 0.130 0.870 43 H 0.121 0.879 44 H 0.129 0.871 45 H 0.138 0.862 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -11.126 14.025 -16.987 24.679 hybrid contribution 1.251 0.412 0.502 1.410 sum -9.875 14.438 -16.484 24.035 Atomic orbital electron populations 1.21672 0.92922 1.02542 1.02435 1.21608 0.97127 0.95359 1.01772 1.22191 0.81021 0.98753 1.01343 1.43370 1.05053 1.31772 1.34658 1.18370 1.14655 0.92586 1.34645 0.88912 1.25533 1.02673 0.91372 0.88038 1.70794 1.33460 1.25635 1.10183 0.86819 0.82987 0.78991 0.79642 1.22728 1.21851 1.18365 1.19069 0.86531 0.84578 0.84226 1.90519 1.19583 1.65942 1.74039 1.20047 0.98584 0.94752 0.98018 1.21542 0.94743 1.00796 0.96272 1.21347 0.99658 0.94085 0.95659 1.21388 0.98088 0.94679 0.99373 1.17438 0.98315 0.84692 0.94176 1.42178 1.08393 1.10754 1.70142 1.16234 0.82861 0.82737 0.78824 1.91058 1.49861 1.57140 1.51875 1.44152 1.10888 1.12381 1.67243 1.21453 0.83599 0.92003 1.07577 1.23542 1.04521 0.96955 0.97450 1.23507 1.04033 0.99127 0.93190 1.21102 0.99877 0.94680 0.97294 0.90837 0.91371 0.93044 0.92036 0.93421 0.95056 0.88139 0.91675 0.84520 0.80315 0.80483 0.73027 0.74372 0.87915 0.87049 0.87947 0.87086 0.86170 0.88935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.37 9.91 71.98 0.71 -2.66 16 2 C -0.12 -4.19 5.34 30.59 0.16 -4.03 16 3 C 0.09 3.68 5.05 86.38 0.44 4.11 16 4 N -0.43 -23.29 2.89 -638.91 -1.85 -25.14 16 5 C -0.48 -28.75 8.43 84.10 0.71 -28.04 16 6 H 0.09 5.37 6.67 -2.91 -0.02 5.35 16 7 C 0.15 9.11 3.79 84.96 0.32 9.43 16 8 N -0.77 -48.30 13.95 21.68 0.30 -47.99 16 9 Si 0.89 50.71 27.91 68.60 1.91 52.62 16 10 H -0.30 -19.11 6.78 99.48 0.67 -18.43 16 11 H -0.29 -15.98 7.11 99.48 0.71 -15.28 16 12 H -0.26 -13.52 7.11 99.48 0.71 -12.81 16 13 C 0.46 26.59 7.10 86.76 0.62 27.21 16 14 O -0.61 -41.50 13.31 -4.01 -0.05 -41.55 16 15 C -0.11 -4.95 5.23 -20.10 -0.11 -5.05 16 16 C -0.11 -3.73 7.37 22.55 0.17 -3.57 16 17 C -0.09 -1.94 10.02 22.21 0.22 -1.72 16 18 C -0.11 -2.36 9.96 22.45 0.22 -2.14 16 19 C 0.15 4.47 6.28 38.10 0.24 4.70 16 20 N -0.66 -15.34 5.34 -317.28 -1.69 -17.04 16 21 C 0.69 20.76 8.40 179.06 1.50 22.26 16 22 O -0.62 -27.59 13.39 -4.00 -0.05 -27.64 16 23 N -0.69 -13.56 5.57 -457.79 -2.55 -16.11 16 24 C 0.06 1.25 6.43 44.99 0.29 1.54 16 25 C -0.19 -2.69 10.46 30.62 0.32 -2.37 16 26 C -0.16 -1.93 10.46 30.62 0.32 -1.61 16 27 C -0.11 -4.70 8.26 22.67 0.19 -4.51 16 28 H 0.07 1.45 8.14 -2.39 -0.02 1.44 16 29 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.06 2.08 8.08 -2.39 -0.02 2.06 16 32 H 0.05 1.91 6.80 -2.39 -0.02 1.90 16 33 H 0.03 1.38 8.14 -2.38 -0.02 1.36 16 34 H 0.10 3.55 4.11 -2.39 -0.01 3.54 16 35 H 0.27 16.06 8.31 -92.71 -0.77 15.29 16 36 H 0.14 4.27 6.54 -2.91 -0.02 4.26 16 37 H 0.18 2.14 8.06 -2.91 -0.02 2.11 16 38 H 0.18 1.77 8.06 -2.91 -0.02 1.75 16 39 H 0.43 5.02 8.84 -92.71 -0.82 4.20 16 40 H 0.42 4.22 8.85 -92.71 -0.82 3.40 16 41 H 0.10 2.94 7.40 -2.39 -0.02 2.92 16 42 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 44 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 45 H 0.12 0.91 8.14 -2.38 -0.02 0.89 16 46 H 0.09 4.97 6.24 -2.91 -0.02 4.95 16 Total: -1.00 -95.53 378.95 1.70 -93.83 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: -0.64 Total: 15.47 kcal Atomic # 6 Polarization: 7.23 SS G_CDS: 6.33 Total: 13.55 kcal Atomic # 7 Polarization: -100.50 SS G_CDS: -5.79 Total: -106.28 kcal Atomic # 8 Polarization: -69.09 SS G_CDS: -0.11 Total: -69.19 kcal Atomic # 14 Polarization: 50.71 SS G_CDS: 1.91 Total: 52.62 kcal Total: -95.53 1.70 -93.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000056485602.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.739 kcal (2) G-P(sol) polarization free energy of solvation -95.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds