Wall clock time and date at job start Tue Mar 31 2020 16:08:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46895 * 2 1 4 4 N 1.46501 * 109.46793 * 174.03376 * 3 2 1 5 5 C 1.36871 * 119.99986 * 75.17354 * 4 3 2 6 6 H 1.08003 * 120.00095 * 181.76470 * 5 4 3 7 7 C 1.39048 * 119.99899 * 1.76297 * 5 4 3 8 8 N 1.31368 * 120.00179 * 7.25631 * 7 5 4 9 9 Si 1.86803 * 119.99958 * 187.25984 * 7 5 4 10 10 H 1.48493 * 109.47026 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47000 * 119.99825 * 9 7 5 12 12 H 1.48508 * 109.46805 * 239.99717 * 9 7 5 13 13 C 1.34778 * 120.00091 * 255.16792 * 4 3 2 14 14 O 1.21590 * 119.99763 * 183.64209 * 13 4 3 15 15 C 1.47744 * 120.00063 * 3.64059 * 13 4 3 16 16 C 1.39688 * 120.11424 * 49.98702 * 15 13 4 17 17 C 1.37962 * 119.98436 * 180.02562 * 16 15 13 18 18 C 1.38272 * 120.22693 * 359.72271 * 17 16 15 19 19 C 1.38956 * 120.23844 * 0.55526 * 18 17 16 20 20 N 1.39973 * 119.99936 * 179.72484 * 19 18 17 21 21 C 1.46388 * 119.32751 * 292.17089 * 20 19 18 22 22 C 1.53242 * 109.15417 * 209.07871 * 21 20 19 23 23 C 1.53494 * 108.42940 * 304.38145 * 22 21 20 24 24 N 1.46384 * 109.01575 * 55.78935 * 23 22 21 25 25 C 1.34136 * 121.33974 * 330.54714 * 24 23 22 26 26 O 1.21580 * 118.69820 * 180.80600 * 25 24 23 27 27 C 1.38608 * 120.01002 * 359.44481 * 19 18 17 28 28 H 1.09006 * 109.47063 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47544 * 299.99840 * 1 2 3 30 30 H 1.09000 * 109.47235 * 60.00170 * 1 2 3 31 31 H 1.08997 * 109.47103 * 239.99874 * 2 1 3 32 32 H 1.09001 * 109.46744 * 120.00023 * 2 1 3 33 33 H 1.08997 * 109.47006 * 54.03925 * 3 2 1 34 34 H 1.08998 * 109.47262 * 294.03743 * 3 2 1 35 35 H 0.96997 * 120.00155 * 180.02562 * 8 7 5 36 36 H 1.07997 * 120.00624 * 359.97438 * 16 15 13 37 37 H 1.08000 * 119.88292 * 180.02562 * 17 16 15 38 38 H 1.08002 * 119.87942 * 180.27177 * 18 17 16 39 39 H 1.09001 * 109.52345 * 328.98431 * 21 20 19 40 40 H 1.09000 * 109.52410 * 89.10844 * 21 20 19 41 41 H 1.08997 * 109.62049 * 64.24214 * 22 21 20 42 42 H 1.08994 * 109.62259 * 184.79753 * 22 21 20 43 43 H 1.09005 * 109.70923 * 295.86325 * 23 22 21 44 44 H 1.09000 * 109.48419 * 175.58035 * 23 22 21 45 45 H 0.96998 * 119.33132 * 150.82633 * 24 23 22 46 46 H 1.07998 * 120.11767 * 180.25672 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.4979 1.4450 0.1436 5 6 4.2907 1.1033 -0.9185 6 1 5.3644 1.0775 -0.8046 7 6 3.7138 0.7894 -2.1441 8 7 2.4236 0.9575 -2.3250 9 14 4.7735 0.1286 -3.5333 10 1 6.1836 0.0331 -3.0778 11 1 4.2882 -1.2181 -3.9285 12 1 4.6910 1.0461 -4.6982 13 6 4.0585 1.7838 1.3215 14 8 5.2684 1.8502 1.4221 15 6 3.2029 2.0746 2.4903 16 6 2.1928 1.1828 2.8587 17 6 1.3951 1.4573 3.9503 18 6 1.5951 2.6107 4.6862 19 6 2.5934 3.5072 4.3247 20 7 2.7877 4.6761 5.0698 21 6 1.7612 5.7195 5.0476 22 6 2.4248 7.0826 5.2708 23 6 3.2199 7.0262 6.5825 24 7 4.1696 5.9142 6.5172 25 6 3.9109 4.8176 5.7893 26 8 4.7269 3.9164 5.7811 27 6 3.4006 3.2412 3.2298 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.5921 1.9862 0.8318 34 1 1.7664 1.9246 -0.9385 35 1 2.0211 0.7381 -3.1799 36 1 2.0359 0.2791 2.2886 37 1 0.6149 0.7665 4.2339 38 1 0.9702 2.8179 5.5423 39 1 1.2567 5.7137 4.0814 40 1 1.0349 5.5329 5.8388 41 1 3.0964 7.3029 4.4410 42 1 1.6593 7.8553 5.3407 43 1 2.5382 6.8743 7.4194 44 1 3.7630 7.9614 6.7189 45 1 5.0011 5.9697 7.0136 46 1 4.1797 3.9348 2.9497 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081406076.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:20 Heat of formation + Delta-G solvation = -3.179017 kcal Electronic energy + Delta-G solvation = -29169.756214 eV Core-core repulsion = 25253.620679 eV Total energy + Delta-G solvation = -3916.135535 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.00364 -39.30620 -37.62438 -36.50574 -35.39003 -34.83997 -32.25140 -31.46296 -31.26998 -30.51682 -29.31219 -26.00311 -25.92692 -24.73579 -23.77198 -22.66430 -21.93069 -20.64624 -19.96834 -18.66673 -17.68859 -17.37208 -16.89241 -16.41439 -16.10989 -15.94024 -15.21524 -14.90995 -14.50474 -14.24251 -14.07856 -13.94198 -13.92761 -13.68987 -13.36229 -13.21717 -12.80185 -12.51220 -12.20185 -12.03993 -11.74271 -11.68641 -11.64909 -11.56876 -11.15439 -11.07049 -10.91798 -10.67109 -10.37729 -10.25697 -10.07630 -10.05705 -9.77894 -9.25957 -9.11361 -8.88421 -8.57970 -8.35542 -8.07786 -7.75416 -6.14391 -3.82436 1.49392 1.71348 2.59193 3.12764 3.16348 3.24544 3.32436 3.63350 3.77169 4.08889 4.29024 4.34873 4.49412 4.76575 4.86788 5.01102 5.13923 5.15824 5.19907 5.28217 5.31893 5.38299 5.52334 5.70443 5.73096 5.85862 5.92091 5.99264 6.03863 6.14259 6.27468 6.31536 6.47769 6.60059 6.72671 6.77125 6.80529 6.89005 6.94261 6.94855 7.01145 7.36330 7.40224 7.61069 7.71881 7.76210 8.08716 8.56361 8.59417 9.17453 9.43923 9.99145 10.63847 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.017742 B = 0.003332 C = 0.003085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.822315 B = 8400.237557 C = 9073.003547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.120 4.120 3 C 0.104 3.896 4 N -0.430 5.430 5 C -0.288 4.288 6 H 0.106 0.894 7 C 0.024 3.976 8 N -0.874 5.874 9 Si 0.931 3.069 10 H -0.268 1.268 11 H -0.280 1.280 12 H -0.281 1.281 13 C 0.470 3.530 14 O -0.588 6.588 15 C -0.074 4.074 16 C -0.098 4.098 17 C -0.118 4.118 18 C -0.120 4.120 19 C 0.142 3.858 20 N -0.577 5.577 21 C 0.113 3.887 22 C -0.154 4.154 23 C 0.110 3.890 24 N -0.739 5.739 25 C 0.707 3.293 26 O -0.575 6.575 27 C -0.065 4.065 28 H 0.039 0.961 29 H 0.039 0.961 30 H 0.055 0.945 31 H 0.088 0.912 32 H 0.032 0.968 33 H 0.034 0.966 34 H 0.136 0.864 35 H 0.265 0.735 36 H 0.137 0.863 37 H 0.125 0.875 38 H 0.118 0.882 39 H 0.087 0.913 40 H 0.067 0.933 41 H 0.080 0.920 42 H 0.098 0.902 43 H 0.064 0.936 44 H 0.082 0.918 45 H 0.414 0.586 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.634 10.490 13.405 19.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.158 4.158 3 C -0.019 4.019 4 N -0.146 5.146 5 C -0.416 4.416 6 H 0.123 0.877 7 C -0.177 4.177 8 N -0.516 5.516 9 Si 0.758 3.242 10 H -0.193 1.193 11 H -0.206 1.206 12 H -0.208 1.208 13 C 0.259 3.741 14 O -0.474 6.474 15 C -0.078 4.078 16 C -0.117 4.117 17 C -0.137 4.137 18 C -0.140 4.140 19 C 0.052 3.948 20 N -0.310 5.310 21 C -0.010 4.010 22 C -0.192 4.192 23 C -0.014 4.014 24 N -0.398 5.398 25 C 0.409 3.591 26 O -0.451 6.451 27 C -0.086 4.086 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.074 0.926 31 H 0.106 0.894 32 H 0.050 0.950 33 H 0.052 0.948 34 H 0.153 0.847 35 H 0.076 0.924 36 H 0.155 0.845 37 H 0.143 0.857 38 H 0.136 0.864 39 H 0.105 0.895 40 H 0.085 0.915 41 H 0.099 0.901 42 H 0.116 0.884 43 H 0.082 0.918 44 H 0.101 0.899 45 H 0.252 0.748 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -8.882 10.025 13.144 18.766 hybrid contribution 0.474 -0.129 -0.376 0.619 sum -8.408 9.896 12.768 18.211 Atomic orbital electron populations 1.21621 0.97279 0.99915 1.00856 1.21959 0.93866 0.98588 1.01351 1.22310 0.79417 0.96972 1.03209 1.43784 1.06384 1.55757 1.08716 1.19915 0.92509 1.41035 0.88144 0.87671 1.25272 0.96216 0.97578 0.98594 1.69889 1.09838 1.47509 1.24378 0.85764 0.80029 0.78330 0.80100 1.19275 1.20625 1.20753 1.17872 0.87562 0.85569 0.83136 1.90633 1.14095 1.58503 1.84126 1.20109 0.95940 0.94668 0.97088 1.21785 0.93620 0.99789 0.96493 1.20851 1.00169 0.96888 0.95759 1.21080 0.99196 0.93973 0.99755 1.17066 0.98174 0.87178 0.92391 1.44224 1.19785 1.18128 1.48911 1.21652 0.90202 0.85897 1.03204 1.22270 1.01035 0.97478 0.98442 1.21571 0.92389 0.90003 0.97480 1.44941 1.24158 1.17462 1.53273 1.15467 0.82004 0.82675 0.78973 1.91050 1.46339 1.39974 1.67764 1.21159 0.97903 0.96763 0.92734 0.94228 0.94165 0.92617 0.89393 0.94982 0.94760 0.84737 0.92389 0.84539 0.85696 0.86396 0.89478 0.91507 0.90096 0.88380 0.91780 0.89919 0.74798 0.85952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 9.91 37.16 0.37 -1.94 16 2 C -0.12 -2.44 5.05 -26.73 -0.14 -2.58 16 3 C 0.10 2.33 4.20 -4.04 -0.02 2.31 16 4 N -0.43 -11.19 2.68 -115.92 -0.31 -11.50 16 5 C -0.29 -7.95 9.44 -15.00 -0.14 -8.10 16 6 H 0.11 3.10 7.17 -52.48 -0.38 2.72 16 7 C 0.02 0.61 4.90 -17.45 -0.09 0.53 16 8 N -0.87 -21.42 7.75 55.50 0.43 -20.99 16 9 Si 0.93 20.41 29.56 -169.99 -5.02 15.39 16 10 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 11 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 12 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 13 C 0.47 12.43 7.15 -12.37 -0.09 12.34 16 14 O -0.59 -17.82 16.62 5.29 0.09 -17.73 16 15 C -0.07 -1.62 4.71 -104.99 -0.49 -2.12 16 16 C -0.10 -1.82 7.67 -39.14 -0.30 -2.12 16 17 C -0.12 -1.79 10.02 -39.67 -0.40 -2.18 16 18 C -0.12 -1.78 9.84 -39.30 -0.39 -2.17 16 19 C 0.14 2.42 4.63 -83.74 -0.39 2.03 16 20 N -0.58 -8.22 2.87 -119.18 -0.34 -8.56 16 21 C 0.11 1.04 6.39 -3.98 -0.03 1.01 16 22 C -0.15 -1.03 6.22 -26.35 -0.16 -1.19 16 23 C 0.11 0.71 7.22 -3.85 -0.03 0.68 16 24 N -0.74 -7.93 5.58 -65.39 -0.37 -8.29 16 25 C 0.71 11.15 8.05 -88.06 -0.71 10.44 16 26 O -0.58 -12.10 16.55 5.30 0.09 -12.01 16 27 C -0.06 -1.33 9.01 -38.96 -0.35 -1.69 16 28 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.09 2.04 6.00 -51.93 -0.31 1.73 16 32 H 0.03 0.64 5.79 -51.93 -0.30 0.34 16 33 H 0.03 0.71 5.47 -51.93 -0.28 0.43 16 34 H 0.14 3.28 5.51 -51.97 -0.29 3.00 16 35 H 0.26 6.16 8.31 -40.82 -0.34 5.82 16 36 H 0.14 2.54 4.64 -52.49 -0.24 2.29 16 37 H 0.13 1.49 8.06 -52.49 -0.42 1.06 16 38 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 39 H 0.09 0.78 8.04 -51.93 -0.42 0.36 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.41 3.93 8.88 -40.82 -0.36 3.56 16 46 H 0.12 2.71 8.06 -52.49 -0.42 2.28 16 LS Contribution 366.45 15.07 5.52 5.52 Total: -1.00 -34.70 366.45 -9.63 -44.33 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: -6.37 Total: 8.58 kcal Atomic # 6 Polarization: 8.61 SS G_CDS: -3.34 Total: 5.27 kcal Atomic # 7 Polarization: -48.76 SS G_CDS: -0.59 Total: -49.35 kcal Atomic # 8 Polarization: -29.92 SS G_CDS: 0.18 Total: -29.74 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -34.70 -9.63 -44.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081406076.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.150 kcal (2) G-P(sol) polarization free energy of solvation -34.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds