Wall clock time and date at job start Tue Mar 31 2020 16:08:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46895 * 2 1 4 4 N 1.46501 * 109.46793 * 174.03376 * 3 2 1 5 5 C 1.36871 * 119.99986 * 75.17354 * 4 3 2 6 6 H 1.08003 * 120.00095 * 181.76470 * 5 4 3 7 7 C 1.39048 * 119.99899 * 1.76297 * 5 4 3 8 8 N 1.31368 * 120.00179 * 7.25631 * 7 5 4 9 9 Si 1.86803 * 119.99958 * 187.25984 * 7 5 4 10 10 H 1.48493 * 109.47026 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47000 * 119.99825 * 9 7 5 12 12 H 1.48508 * 109.46805 * 239.99717 * 9 7 5 13 13 C 1.34778 * 120.00091 * 255.16792 * 4 3 2 14 14 O 1.21590 * 119.99763 * 183.64209 * 13 4 3 15 15 C 1.47744 * 120.00063 * 3.64059 * 13 4 3 16 16 C 1.39688 * 120.11424 * 49.98702 * 15 13 4 17 17 C 1.37962 * 119.98436 * 180.02562 * 16 15 13 18 18 C 1.38272 * 120.22693 * 359.72271 * 17 16 15 19 19 C 1.38956 * 120.23844 * 0.55526 * 18 17 16 20 20 N 1.39973 * 119.99936 * 179.72484 * 19 18 17 21 21 C 1.46388 * 119.32751 * 292.17089 * 20 19 18 22 22 C 1.53242 * 109.15417 * 209.07871 * 21 20 19 23 23 C 1.53494 * 108.42940 * 304.38145 * 22 21 20 24 24 N 1.46384 * 109.01575 * 55.78935 * 23 22 21 25 25 C 1.34136 * 121.33974 * 330.54714 * 24 23 22 26 26 O 1.21580 * 118.69820 * 180.80600 * 25 24 23 27 27 C 1.38608 * 120.01002 * 359.44481 * 19 18 17 28 28 H 1.09006 * 109.47063 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47544 * 299.99840 * 1 2 3 30 30 H 1.09000 * 109.47235 * 60.00170 * 1 2 3 31 31 H 1.08997 * 109.47103 * 239.99874 * 2 1 3 32 32 H 1.09001 * 109.46744 * 120.00023 * 2 1 3 33 33 H 1.08997 * 109.47006 * 54.03925 * 3 2 1 34 34 H 1.08998 * 109.47262 * 294.03743 * 3 2 1 35 35 H 0.96997 * 120.00155 * 180.02562 * 8 7 5 36 36 H 1.07997 * 120.00624 * 359.97438 * 16 15 13 37 37 H 1.08000 * 119.88292 * 180.02562 * 17 16 15 38 38 H 1.08002 * 119.87942 * 180.27177 * 18 17 16 39 39 H 1.09001 * 109.52345 * 328.98431 * 21 20 19 40 40 H 1.09000 * 109.52410 * 89.10844 * 21 20 19 41 41 H 1.08997 * 109.62049 * 64.24214 * 22 21 20 42 42 H 1.08994 * 109.62259 * 184.79753 * 22 21 20 43 43 H 1.09005 * 109.70923 * 295.86325 * 23 22 21 44 44 H 1.09000 * 109.48419 * 175.58035 * 23 22 21 45 45 H 0.96998 * 119.33132 * 150.82633 * 24 23 22 46 46 H 1.07998 * 120.11767 * 180.25672 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.4979 1.4450 0.1436 5 6 4.2907 1.1033 -0.9185 6 1 5.3644 1.0775 -0.8046 7 6 3.7138 0.7894 -2.1441 8 7 2.4236 0.9575 -2.3250 9 14 4.7735 0.1286 -3.5333 10 1 6.1836 0.0331 -3.0778 11 1 4.2882 -1.2181 -3.9285 12 1 4.6910 1.0461 -4.6982 13 6 4.0585 1.7838 1.3215 14 8 5.2684 1.8502 1.4221 15 6 3.2029 2.0746 2.4903 16 6 2.1928 1.1828 2.8587 17 6 1.3951 1.4573 3.9503 18 6 1.5951 2.6107 4.6862 19 6 2.5934 3.5072 4.3247 20 7 2.7877 4.6761 5.0698 21 6 1.7612 5.7195 5.0476 22 6 2.4248 7.0826 5.2708 23 6 3.2199 7.0262 6.5825 24 7 4.1696 5.9142 6.5172 25 6 3.9109 4.8176 5.7893 26 8 4.7269 3.9164 5.7811 27 6 3.4006 3.2412 3.2298 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.5921 1.9862 0.8318 34 1 1.7664 1.9246 -0.9385 35 1 2.0211 0.7381 -3.1799 36 1 2.0359 0.2791 2.2886 37 1 0.6149 0.7665 4.2339 38 1 0.9702 2.8179 5.5423 39 1 1.2567 5.7137 4.0814 40 1 1.0349 5.5329 5.8388 41 1 3.0964 7.3029 4.4410 42 1 1.6593 7.8553 5.3407 43 1 2.5382 6.8743 7.4194 44 1 3.7630 7.9614 6.7189 45 1 5.0011 5.9697 7.0136 46 1 4.1797 3.9348 2.9497 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081406076.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:19 Heat of formation + Delta-G solvation = -26.932628 kcal Electronic energy + Delta-G solvation = -29170.786247 eV Core-core repulsion = 25253.620679 eV Total energy + Delta-G solvation = -3917.165569 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.12238 -40.99179 -39.17338 -37.55980 -37.38456 -35.92541 -34.02918 -33.31523 -32.21082 -32.01494 -30.55620 -27.78306 -26.78171 -26.47916 -24.83998 -24.25309 -23.02675 -22.30032 -21.39012 -19.98763 -18.97950 -18.71312 -18.43056 -17.76791 -17.61487 -17.10884 -16.69800 -16.20758 -16.14671 -15.89897 -15.45276 -15.24927 -15.10636 -14.79740 -14.70036 -14.54364 -14.43828 -13.88053 -13.65476 -13.48116 -13.13410 -13.10782 -12.84432 -12.62965 -12.58365 -12.42013 -12.34383 -12.23536 -12.11955 -12.10996 -11.82915 -11.50819 -11.26980 -10.77371 -10.58623 -10.34823 -10.06060 -9.87492 -9.75302 -9.39507 -8.13418 -5.92620 0.07433 0.30842 1.33617 1.40202 1.53125 1.57134 1.94765 2.04415 2.23973 2.67473 2.88051 3.05253 3.12570 3.75820 3.84475 3.90368 3.94989 4.07112 4.20395 4.31409 4.38152 4.41969 4.47971 4.57880 4.59348 4.66728 4.71970 4.77857 4.81743 4.87492 4.96592 5.13043 5.17273 5.29247 5.31538 5.33601 5.38725 5.42824 5.49402 5.54528 5.60299 5.74184 5.89259 6.02952 6.06477 6.08882 6.55748 6.71865 7.12517 7.42660 7.48356 7.98081 8.61393 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.017742 B = 0.003332 C = 0.003085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.822315 B = 8400.237557 C = 9073.003547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.112 4.112 3 C 0.109 3.891 4 N -0.433 5.433 5 C -0.341 4.341 6 H 0.068 0.932 7 C 0.008 3.992 8 N -0.865 5.865 9 Si 0.990 3.010 10 H -0.285 1.285 11 H -0.263 1.263 12 H -0.268 1.268 13 C 0.449 3.551 14 O -0.651 6.651 15 C -0.102 4.102 16 C -0.105 4.105 17 C -0.096 4.096 18 C -0.101 4.101 19 C 0.146 3.854 20 N -0.578 5.578 21 C 0.102 3.898 22 C -0.150 4.150 23 C 0.105 3.895 24 N -0.728 5.728 25 C 0.697 3.303 26 O -0.644 6.644 27 C -0.090 4.090 28 H 0.059 0.941 29 H 0.063 0.937 30 H 0.050 0.950 31 H 0.057 0.943 32 H 0.033 0.967 33 H 0.052 0.948 34 H 0.117 0.883 35 H 0.275 0.725 36 H 0.135 0.865 37 H 0.175 0.825 38 H 0.164 0.836 39 H 0.088 0.912 40 H 0.099 0.901 41 H 0.058 0.942 42 H 0.140 0.860 43 H 0.090 0.910 44 H 0.111 0.889 45 H 0.419 0.581 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.171 11.256 15.158 23.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.150 4.150 3 C -0.013 4.013 4 N -0.147 5.147 5 C -0.469 4.469 6 H 0.086 0.914 7 C -0.194 4.194 8 N -0.504 5.504 9 Si 0.814 3.186 10 H -0.210 1.210 11 H -0.188 1.188 12 H -0.193 1.193 13 C 0.239 3.761 14 O -0.542 6.542 15 C -0.106 4.106 16 C -0.124 4.124 17 C -0.115 4.115 18 C -0.120 4.120 19 C 0.055 3.945 20 N -0.311 5.311 21 C -0.018 4.018 22 C -0.188 4.188 23 C -0.018 4.018 24 N -0.386 5.386 25 C 0.398 3.602 26 O -0.525 6.525 27 C -0.111 4.111 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.051 0.949 33 H 0.070 0.930 34 H 0.134 0.866 35 H 0.086 0.914 36 H 0.152 0.848 37 H 0.192 0.808 38 H 0.182 0.818 39 H 0.106 0.894 40 H 0.117 0.883 41 H 0.077 0.923 42 H 0.158 0.842 43 H 0.108 0.892 44 H 0.129 0.871 45 H 0.257 0.743 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -13.537 10.864 14.895 22.872 hybrid contribution 1.814 -0.256 -0.909 2.045 sum -11.723 10.608 13.986 21.109 Atomic orbital electron populations 1.21534 0.93666 1.01582 1.01817 1.21803 0.96855 0.96433 0.99902 1.22328 0.77476 0.98623 1.02835 1.44012 1.07744 1.54678 1.08257 1.19735 0.91540 1.45451 0.90221 0.91402 1.25907 0.97616 0.96399 0.99523 1.69986 1.10090 1.45143 1.25192 0.84924 0.77658 0.78615 0.77391 1.21002 1.18772 1.19260 1.18713 0.87557 0.85214 0.84611 1.90549 1.16946 1.61314 1.85427 1.19793 0.97604 0.96764 0.96414 1.21803 0.93488 0.98959 0.98152 1.21338 0.99503 0.97301 0.93313 1.21560 0.97914 0.92478 1.00095 1.17218 0.97499 0.88745 0.91050 1.44382 1.20502 1.18465 1.47736 1.22089 0.89623 0.85586 1.04552 1.22327 1.01643 0.97112 0.97722 1.21969 0.92305 0.89354 0.98165 1.44984 1.25052 1.16942 1.51595 1.15820 0.81715 0.83155 0.79472 1.91001 1.48549 1.42778 1.70190 1.21001 0.98649 0.96444 0.95042 0.92200 0.91792 0.93045 0.92421 0.94884 0.92992 0.86595 0.91382 0.84767 0.80758 0.81840 0.89403 0.88257 0.92328 0.84241 0.89211 0.87092 0.74345 0.89829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.91 9.91 71.98 0.71 -3.20 16 2 C -0.11 -4.55 5.05 30.59 0.15 -4.39 16 3 C 0.11 5.03 4.20 86.38 0.36 5.40 16 4 N -0.43 -24.13 2.68 -638.93 -1.71 -25.84 16 5 C -0.34 -20.31 9.44 84.10 0.79 -19.52 16 6 H 0.07 4.44 7.17 -2.91 -0.02 4.42 16 7 C 0.01 0.40 4.90 84.96 0.42 0.82 16 8 N -0.86 -42.70 7.75 21.68 0.17 -42.53 16 9 Si 0.99 42.77 29.56 68.60 2.03 44.80 16 10 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 11 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 12 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 13 C 0.45 25.97 7.15 86.76 0.62 26.59 16 14 O -0.65 -44.04 16.62 -4.00 -0.07 -44.11 16 15 C -0.10 -4.75 4.71 -20.10 -0.09 -4.85 16 16 C -0.11 -3.87 7.67 22.55 0.17 -3.69 16 17 C -0.10 -2.56 10.02 22.21 0.22 -2.33 16 18 C -0.10 -2.62 9.84 22.45 0.22 -2.40 16 19 C 0.15 4.91 4.63 38.10 0.18 5.09 16 20 N -0.58 -15.91 2.87 -649.59 -1.86 -17.77 16 21 C 0.10 1.55 6.39 86.48 0.55 2.10 16 22 C -0.15 -1.52 6.22 30.84 0.19 -1.32 16 23 C 0.10 0.97 7.22 86.57 0.62 1.60 16 24 N -0.73 -14.78 5.58 -479.42 -2.68 -17.45 16 25 C 0.70 22.16 8.05 179.45 1.44 23.60 16 26 O -0.64 -28.61 16.55 -3.97 -0.07 -28.68 16 27 C -0.09 -3.98 9.01 22.67 0.20 -3.78 16 28 H 0.06 1.59 8.14 -2.38 -0.02 1.57 16 29 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.06 2.68 6.00 -2.39 -0.01 2.67 16 32 H 0.03 1.33 5.79 -2.39 -0.01 1.31 16 33 H 0.05 2.19 5.47 -2.39 -0.01 2.17 16 34 H 0.12 5.79 5.51 -2.46 -0.01 5.78 16 35 H 0.27 12.54 8.31 -92.71 -0.77 11.77 16 36 H 0.13 4.93 4.64 -2.91 -0.01 4.92 16 37 H 0.18 2.99 8.06 -2.91 -0.02 2.97 16 38 H 0.16 2.86 8.06 -2.91 -0.02 2.84 16 39 H 0.09 1.34 8.04 -2.39 -0.02 1.32 16 40 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.14 0.32 8.14 -2.39 -0.02 0.30 16 43 H 0.09 0.49 8.14 -2.38 -0.02 0.47 16 44 H 0.11 0.48 8.14 -2.39 -0.02 0.46 16 45 H 0.42 7.71 8.88 -92.71 -0.82 6.89 16 46 H 0.08 4.20 8.06 -2.91 -0.02 4.18 16 Total: -1.00 -88.14 366.45 2.78 -85.35 By element: Atomic # 1 Polarization: 26.33 SS G_CDS: 0.19 Total: 26.53 kcal Atomic # 6 Polarization: 12.93 SS G_CDS: 6.78 Total: 19.71 kcal Atomic # 7 Polarization: -97.51 SS G_CDS: -6.08 Total: -103.60 kcal Atomic # 8 Polarization: -72.66 SS G_CDS: -0.13 Total: -72.79 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.80 kcal Total: -88.14 2.78 -85.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081406076.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.419 kcal (2) G-P(sol) polarization free energy of solvation -88.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds