Wall clock time and date at job start Tue Mar 31 2020 16:08:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.47529 * 2 1 4 4 N 1.46503 * 109.47422 * 179.97438 * 3 2 1 5 5 C 1.37092 * 120.00438 * 264.77057 * 4 3 2 6 6 H 1.08005 * 120.00187 * 138.85153 * 5 4 3 7 7 C 1.38949 * 120.00069 * 318.85596 * 5 4 3 8 8 N 1.31415 * 119.99788 * 341.82525 * 7 5 4 9 9 Si 1.86803 * 120.00435 * 161.82805 * 7 5 4 10 10 H 1.48504 * 109.46689 * 59.99893 * 9 7 5 11 11 H 1.48496 * 109.47226 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.46986 * 300.00182 * 9 7 5 13 13 C 1.34784 * 119.99642 * 84.77086 * 4 3 2 14 14 O 1.21290 * 119.99972 * 180.02562 * 13 4 3 15 15 C 1.50695 * 120.00009 * 0.02562 * 13 4 3 16 16 C 1.53000 * 109.47398 * 180.02562 * 15 13 4 17 17 C 1.52997 * 109.47752 * 179.97438 * 16 15 13 18 18 C 1.50692 * 109.47339 * 179.97438 * 17 16 15 19 19 C 1.38439 * 119.86122 * 90.00068 * 18 17 16 20 20 C 1.38106 * 120.28686 * 180.02562 * 19 18 17 21 21 C 1.38658 * 119.85196 * 359.97438 * 20 19 18 22 22 N 1.39286 * 133.33826 * 180.02562 * 21 20 19 23 23 H 0.97005 * 125.82217 * 0.02765 * 22 21 20 24 24 C 1.34635 * 108.36305 * 179.97438 * 22 21 20 25 25 O 1.21687 * 125.16424 * 179.97438 * 24 22 21 26 26 N 1.34641 * 109.67471 * 359.97438 * 24 22 21 27 27 H 0.97004 * 125.81846 * 180.02562 * 26 24 22 28 28 C 1.39282 * 108.36478 * 0.26136 * 26 24 22 29 29 C 1.38106 * 119.86347 * 269.97547 * 18 17 16 30 30 H 1.08998 * 109.46973 * 59.99360 * 1 2 3 31 31 H 1.08995 * 109.47323 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.46219 * 300.00139 * 1 2 3 33 33 H 1.09007 * 109.46962 * 239.99878 * 2 1 3 34 34 H 1.09004 * 109.47590 * 120.00392 * 2 1 3 35 35 H 1.09004 * 109.47563 * 60.00128 * 3 2 1 36 36 H 1.08998 * 109.47516 * 300.00308 * 3 2 1 37 37 H 0.97002 * 119.99785 * 179.97438 * 8 7 5 38 38 H 1.08996 * 109.47605 * 60.00045 * 15 13 4 39 39 H 1.09009 * 109.47174 * 299.99762 * 15 13 4 40 40 H 1.09004 * 109.47102 * 59.99627 * 16 15 13 41 41 H 1.09004 * 109.46961 * 300.00058 * 16 15 13 42 42 H 1.09004 * 109.47059 * 59.99677 * 17 16 15 43 43 H 1.09004 * 109.46998 * 300.00112 * 17 16 15 44 44 H 1.08004 * 119.85424 * 359.97438 * 19 18 17 45 45 H 1.08004 * 120.07100 * 179.97438 * 20 19 18 46 46 H 1.08005 * 120.07005 * 0.02562 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.1902 1.5507 1.1831 6 1 5.0701 0.9484 1.3547 7 6 3.7525 2.4355 2.1611 8 7 2.9272 3.4082 1.8452 9 14 4.3371 2.2423 3.9247 10 1 5.8167 2.3594 3.9713 11 1 3.7302 3.3045 4.7665 12 1 3.9296 0.9098 4.4381 13 6 4.1794 1.3358 -1.1615 14 8 5.3923 1.3353 -1.1610 15 6 3.4264 1.2173 -2.4615 16 6 4.4210 1.1103 -3.6191 17 6 3.6566 0.9893 -4.9389 18 6 4.6363 0.8846 -6.0791 19 6 5.0843 -0.3589 -6.4910 20 6 5.9825 -0.4650 -7.5347 21 6 6.4371 0.6789 -8.1730 22 7 7.3193 0.8980 -9.2284 23 1 7.7940 0.2120 -9.7234 24 6 7.3999 2.2243 -9.4454 25 8 8.0862 2.7544 -10.2990 26 7 6.6058 2.8752 -8.5744 27 1 6.4866 3.8366 -8.5240 28 6 5.9887 1.9333 -7.7547 29 6 5.0831 2.0295 -6.7092 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3632 0.5139 0.8901 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 1.6768 1.9563 0.8900 36 1 1.6768 1.9563 -0.8899 37 1 2.6213 4.0256 2.5280 38 1 2.8002 2.0985 -2.6003 39 1 2.7994 0.3259 -2.4382 40 1 5.0470 0.2288 -3.4801 41 1 5.0484 2.0014 -3.6426 42 1 3.0303 1.8706 -5.0782 43 1 3.0295 0.0980 -4.9152 44 1 4.7304 -1.2497 -5.9934 45 1 6.3300 -1.4368 -7.8529 46 1 4.7314 2.9979 -6.3852 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000106748599.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:36 Heat of formation + Delta-G solvation = -34.092874 kcal Electronic energy + Delta-G solvation = -27328.469879 eV Core-core repulsion = 23410.993818 eV Total energy + Delta-G solvation = -3917.476060 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.64750 -38.98130 -38.52368 -36.63292 -35.30896 -34.44062 -33.84324 -32.73776 -31.16419 -30.50367 -29.59230 -26.75637 -25.67167 -24.36061 -23.39804 -22.62487 -22.36217 -21.07158 -20.81603 -18.68619 -18.47083 -17.63262 -16.80499 -16.65812 -16.46454 -16.09249 -15.74094 -15.33701 -14.86470 -14.46780 -14.43169 -14.22819 -13.94919 -13.74607 -13.42176 -13.29288 -12.92548 -12.63202 -12.37174 -11.96917 -11.67510 -11.61741 -11.55482 -11.48830 -11.37147 -11.09410 -11.07356 -10.92380 -10.77322 -10.61610 -10.59339 -10.42094 -10.33233 -10.19162 -9.89604 -8.88824 -8.69053 -8.33836 -8.05398 -7.37949 -6.29594 -3.97835 0.97238 1.12868 2.23103 2.64978 3.11991 3.20760 3.25948 3.29394 3.45281 3.97886 4.18095 4.25897 4.61538 4.84756 4.88513 4.95700 5.03706 5.08276 5.11332 5.35381 5.45647 5.51325 5.55961 5.65399 5.66419 5.76785 5.84791 5.87665 5.95652 6.06118 6.07339 6.14259 6.31154 6.34521 6.35087 6.38699 6.45985 6.47463 6.57217 6.65349 6.65948 6.73359 6.92248 6.97030 7.25211 7.60563 7.96119 8.33366 8.55965 9.24023 9.44564 10.07477 10.75541 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.018618 B = 0.002191 C = 0.002062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.555238 B =12776.482819 C =13575.979180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.141 4.141 3 C 0.110 3.890 4 N -0.445 5.445 5 C -0.308 4.308 6 H 0.086 0.914 7 C 0.038 3.962 8 N -0.873 5.873 9 Si 0.916 3.084 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.461 3.539 14 O -0.582 6.582 15 C -0.136 4.136 16 C -0.094 4.094 17 C -0.081 4.081 18 C -0.058 4.058 19 C -0.103 4.103 20 C -0.102 4.102 21 C 0.077 3.923 22 N -0.643 5.643 23 H 0.434 0.566 24 C 0.684 3.316 25 O -0.563 6.563 26 N -0.642 5.642 27 H 0.435 0.565 28 C 0.090 3.910 29 C -0.101 4.101 30 H 0.049 0.951 31 H 0.046 0.954 32 H 0.053 0.947 33 H 0.050 0.950 34 H 0.063 0.937 35 H 0.102 0.898 36 H 0.048 0.952 37 H 0.267 0.733 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.068 0.932 41 H 0.068 0.932 42 H 0.074 0.926 43 H 0.075 0.925 44 H 0.135 0.865 45 H 0.130 0.870 46 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.477 -6.736 -16.495 18.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.180 4.180 3 C -0.014 4.014 4 N -0.164 5.164 5 C -0.436 4.436 6 H 0.103 0.897 7 C -0.166 4.166 8 N -0.511 5.511 9 Si 0.743 3.257 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.199 1.199 13 C 0.250 3.750 14 O -0.465 6.465 15 C -0.176 4.176 16 C -0.132 4.132 17 C -0.118 4.118 18 C -0.060 4.060 19 C -0.123 4.123 20 C -0.123 4.123 21 C -0.025 4.025 22 N -0.289 5.289 23 H 0.275 0.725 24 C 0.383 3.617 25 O -0.440 6.440 26 N -0.288 5.288 27 H 0.277 0.723 28 C -0.012 4.012 29 C -0.123 4.123 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.082 0.918 35 H 0.120 0.880 36 H 0.066 0.934 37 H 0.077 0.923 38 H 0.097 0.903 39 H 0.095 0.905 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.092 0.908 43 H 0.094 0.906 44 H 0.153 0.847 45 H 0.148 0.852 46 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -2.483 -6.178 -16.981 18.239 hybrid contribution 0.281 0.186 0.742 0.815 sum -2.202 -5.992 -16.238 17.448 Atomic orbital electron populations 1.21683 0.96416 1.00640 1.01552 1.21997 0.94811 0.99464 1.01686 1.21506 0.82412 0.94113 1.03400 1.43455 1.04347 1.63681 1.04948 1.19308 1.11868 1.21316 0.91145 0.89663 1.25402 0.97122 0.93600 1.00461 1.69918 1.33698 1.13505 1.33981 0.86172 0.79304 0.77878 0.82376 1.19782 1.21025 1.19921 1.20433 0.88107 0.81461 0.85021 1.90515 1.14285 1.54741 1.87005 1.21662 0.98966 1.02659 0.94318 1.21270 0.97472 1.03558 0.90854 1.20704 0.95991 1.03081 0.92063 1.19685 0.97933 0.91938 0.96406 1.20842 0.97353 0.97761 0.96319 1.20059 0.99414 0.95693 0.97161 1.17997 0.96759 0.94742 0.92981 1.42890 1.44302 1.08002 1.33685 0.72505 1.15937 0.81685 0.81452 0.82576 1.91101 1.45801 1.70283 1.36812 1.42930 1.43544 1.09866 1.32448 0.72332 1.17982 0.99608 0.87006 0.96567 1.20012 0.97636 0.99789 0.94828 0.93145 0.93493 0.92799 0.93092 0.91802 0.87976 0.93398 0.92315 0.90299 0.90494 0.91333 0.91330 0.90780 0.90615 0.84701 0.85165 0.84919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 9.91 37.16 0.37 -1.60 16 2 C -0.14 -2.39 6.17 -26.73 -0.16 -2.56 16 3 C 0.11 2.27 4.69 -4.04 -0.02 2.25 16 4 N -0.45 -10.95 2.50 -114.81 -0.29 -11.23 16 5 C -0.31 -8.44 8.84 -14.94 -0.13 -8.57 16 6 H 0.09 2.45 7.82 -52.48 -0.41 2.04 16 7 C 0.04 1.01 4.95 -17.47 -0.09 0.92 16 8 N -0.87 -23.36 11.61 55.50 0.64 -22.72 16 9 Si 0.92 20.51 29.59 -169.99 -5.03 15.48 16 10 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 11 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 12 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 13 C 0.46 10.84 7.59 -10.98 -0.08 10.76 16 14 O -0.58 -15.90 15.89 5.55 0.09 -15.81 16 15 C -0.14 -2.26 4.31 -27.89 -0.12 -2.38 16 16 C -0.09 -1.36 4.49 -26.73 -0.12 -1.48 16 17 C -0.08 -0.82 5.34 -27.89 -0.15 -0.97 16 18 C -0.06 -0.57 5.13 -104.60 -0.54 -1.11 16 19 C -0.10 -0.91 9.68 -39.56 -0.38 -1.29 16 20 C -0.10 -0.85 10.07 -39.47 -0.40 -1.24 16 21 C 0.08 0.74 7.26 -83.80 -0.61 0.13 16 22 N -0.64 -5.98 6.15 -14.30 -0.09 -6.07 16 23 H 0.43 2.86 8.96 -40.82 -0.37 2.49 16 24 C 0.68 8.10 9.21 -87.17 -0.80 7.30 16 25 O -0.56 -8.54 18.05 5.20 0.09 -8.45 16 26 N -0.64 -6.36 6.15 -14.30 -0.09 -6.45 16 27 H 0.44 3.30 8.96 -40.82 -0.37 2.94 16 28 C 0.09 0.92 7.26 -83.80 -0.61 0.31 16 29 C -0.10 -1.00 9.71 -39.48 -0.38 -1.38 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.05 0.75 8.14 -51.92 -0.42 0.32 16 33 H 0.05 0.81 6.60 -51.92 -0.34 0.46 16 34 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.10 2.37 5.76 -51.93 -0.30 2.07 16 36 H 0.05 0.90 6.66 -51.93 -0.35 0.55 16 37 H 0.27 6.76 8.31 -40.82 -0.34 6.43 16 38 H 0.08 1.24 7.41 -51.93 -0.38 0.85 16 39 H 0.08 1.12 6.54 -51.92 -0.34 0.79 16 40 H 0.07 1.07 8.10 -51.93 -0.42 0.65 16 41 H 0.07 1.12 8.10 -51.93 -0.42 0.70 16 42 H 0.07 0.68 8.08 -51.93 -0.42 0.27 16 43 H 0.08 0.66 8.08 -51.93 -0.42 0.24 16 44 H 0.14 0.97 8.06 -52.48 -0.42 0.55 16 45 H 0.13 0.75 8.06 -52.48 -0.42 0.33 16 46 H 0.13 1.13 8.06 -52.48 -0.42 0.70 16 LS Contribution 382.00 15.07 5.76 5.76 Total: -1.00 -34.39 382.00 -9.77 -44.16 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -6.63 Total: 6.23 kcal Atomic # 6 Polarization: 3.32 SS G_CDS: -4.23 Total: -0.90 kcal Atomic # 7 Polarization: -46.65 SS G_CDS: 0.18 Total: -46.47 kcal Atomic # 8 Polarization: -24.44 SS G_CDS: 0.18 Total: -24.26 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.03 Total: 15.48 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.39 -9.77 -44.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000106748599.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.064 kcal (2) G-P(sol) polarization free energy of solvation -34.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds