Wall clock time and date at job start Tue Mar 31 2020 16:08:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.47529 * 2 1 4 4 N 1.46503 * 109.47422 * 179.97438 * 3 2 1 5 5 C 1.37092 * 120.00438 * 264.77057 * 4 3 2 6 6 H 1.08005 * 120.00187 * 138.85153 * 5 4 3 7 7 C 1.38949 * 120.00069 * 318.85596 * 5 4 3 8 8 N 1.31415 * 119.99788 * 341.82525 * 7 5 4 9 9 Si 1.86803 * 120.00435 * 161.82805 * 7 5 4 10 10 H 1.48504 * 109.46689 * 59.99893 * 9 7 5 11 11 H 1.48496 * 109.47226 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.46986 * 300.00182 * 9 7 5 13 13 C 1.34784 * 119.99642 * 84.77086 * 4 3 2 14 14 O 1.21290 * 119.99972 * 180.02562 * 13 4 3 15 15 C 1.50695 * 120.00009 * 0.02562 * 13 4 3 16 16 C 1.53000 * 109.47398 * 180.02562 * 15 13 4 17 17 C 1.52997 * 109.47752 * 179.97438 * 16 15 13 18 18 C 1.50692 * 109.47339 * 179.97438 * 17 16 15 19 19 C 1.38439 * 119.86122 * 90.00068 * 18 17 16 20 20 C 1.38106 * 120.28686 * 180.02562 * 19 18 17 21 21 C 1.38658 * 119.85196 * 359.97438 * 20 19 18 22 22 N 1.39286 * 133.33826 * 180.02562 * 21 20 19 23 23 H 0.97005 * 125.82217 * 0.02765 * 22 21 20 24 24 C 1.34635 * 108.36305 * 179.97438 * 22 21 20 25 25 O 1.21687 * 125.16424 * 179.97438 * 24 22 21 26 26 N 1.34641 * 109.67471 * 359.97438 * 24 22 21 27 27 H 0.97004 * 125.81846 * 180.02562 * 26 24 22 28 28 C 1.39282 * 108.36478 * 0.26136 * 26 24 22 29 29 C 1.38106 * 119.86347 * 269.97547 * 18 17 16 30 30 H 1.08998 * 109.46973 * 59.99360 * 1 2 3 31 31 H 1.08995 * 109.47323 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.46219 * 300.00139 * 1 2 3 33 33 H 1.09007 * 109.46962 * 239.99878 * 2 1 3 34 34 H 1.09004 * 109.47590 * 120.00392 * 2 1 3 35 35 H 1.09004 * 109.47563 * 60.00128 * 3 2 1 36 36 H 1.08998 * 109.47516 * 300.00308 * 3 2 1 37 37 H 0.97002 * 119.99785 * 179.97438 * 8 7 5 38 38 H 1.08996 * 109.47605 * 60.00045 * 15 13 4 39 39 H 1.09009 * 109.47174 * 299.99762 * 15 13 4 40 40 H 1.09004 * 109.47102 * 59.99627 * 16 15 13 41 41 H 1.09004 * 109.46961 * 300.00058 * 16 15 13 42 42 H 1.09004 * 109.47059 * 59.99677 * 17 16 15 43 43 H 1.09004 * 109.46998 * 300.00112 * 17 16 15 44 44 H 1.08004 * 119.85424 * 359.97438 * 19 18 17 45 45 H 1.08004 * 120.07100 * 179.97438 * 20 19 18 46 46 H 1.08005 * 120.07005 * 0.02562 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.1902 1.5507 1.1831 6 1 5.0701 0.9484 1.3547 7 6 3.7525 2.4355 2.1611 8 7 2.9272 3.4082 1.8452 9 14 4.3371 2.2423 3.9247 10 1 5.8167 2.3594 3.9713 11 1 3.7302 3.3045 4.7665 12 1 3.9296 0.9098 4.4381 13 6 4.1794 1.3358 -1.1615 14 8 5.3923 1.3353 -1.1610 15 6 3.4264 1.2173 -2.4615 16 6 4.4210 1.1103 -3.6191 17 6 3.6566 0.9893 -4.9389 18 6 4.6363 0.8846 -6.0791 19 6 5.0843 -0.3589 -6.4910 20 6 5.9825 -0.4650 -7.5347 21 6 6.4371 0.6789 -8.1730 22 7 7.3193 0.8980 -9.2284 23 1 7.7940 0.2120 -9.7234 24 6 7.3999 2.2243 -9.4454 25 8 8.0862 2.7544 -10.2990 26 7 6.6058 2.8752 -8.5744 27 1 6.4866 3.8366 -8.5240 28 6 5.9887 1.9333 -7.7547 29 6 5.0831 2.0295 -6.7092 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3632 0.5139 0.8901 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 1.6768 1.9563 0.8900 36 1 1.6768 1.9563 -0.8899 37 1 2.6213 4.0256 2.5280 38 1 2.8002 2.0985 -2.6003 39 1 2.7994 0.3259 -2.4382 40 1 5.0470 0.2288 -3.4801 41 1 5.0484 2.0014 -3.6426 42 1 3.0303 1.8706 -5.0782 43 1 3.0295 0.0980 -4.9152 44 1 4.7304 -1.2497 -5.9934 45 1 6.3300 -1.4368 -7.8529 46 1 4.7314 2.9979 -6.3852 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000106748599.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:35 Heat of formation + Delta-G solvation = -56.229698 kcal Electronic energy + Delta-G solvation = -27329.429804 eV Core-core repulsion = 23410.993818 eV Total energy + Delta-G solvation = -3918.435985 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.43723 -40.47085 -39.62894 -37.59617 -37.03616 -35.28214 -34.97388 -34.35811 -32.90573 -31.41099 -30.48460 -28.09816 -27.08357 -25.95022 -24.15609 -23.58052 -23.34844 -22.37042 -21.84020 -20.39022 -19.25616 -18.72873 -18.41535 -17.63163 -17.43558 -17.30855 -16.99239 -16.61467 -16.38805 -16.01688 -15.62416 -15.30322 -14.91519 -14.85651 -14.64337 -14.41732 -14.19567 -13.91650 -13.47576 -13.37112 -13.21590 -12.94005 -12.78175 -12.66146 -12.61945 -12.34591 -12.29387 -12.21039 -12.05413 -11.91445 -11.91026 -11.75309 -11.54325 -11.47647 -11.31136 -10.81986 -10.23563 -9.39702 -9.31446 -8.85180 -8.29919 -6.05746 0.25368 0.39297 1.40021 1.40980 1.48185 1.50736 1.76724 2.16587 2.32506 2.36966 2.72774 3.05112 3.20204 3.57434 3.89265 4.06945 4.10305 4.21084 4.24747 4.29008 4.39536 4.41177 4.46377 4.53266 4.65099 4.75659 4.81621 4.84964 4.89504 4.99282 5.06155 5.07334 5.14378 5.21794 5.29581 5.36905 5.39378 5.47656 5.51713 5.56752 5.59012 5.67112 5.69118 5.79134 5.95561 6.24548 6.28789 6.63132 7.13701 7.25886 7.56939 8.18021 8.73078 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.018618 B = 0.002191 C = 0.002062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.555238 B =12776.482819 C =13575.979180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.132 4.132 3 C 0.111 3.889 4 N -0.461 5.461 5 C -0.340 4.340 6 H 0.057 0.943 7 C 0.003 3.997 8 N -0.892 5.892 9 Si 0.976 3.024 10 H -0.280 1.280 11 H -0.273 1.273 12 H -0.263 1.263 13 C 0.444 3.556 14 O -0.634 6.634 15 C -0.122 4.122 16 C -0.085 4.085 17 C -0.068 4.068 18 C -0.069 4.069 19 C -0.104 4.104 20 C -0.097 4.097 21 C 0.067 3.933 22 N -0.630 5.630 23 H 0.445 0.555 24 C 0.674 3.326 25 O -0.604 6.604 26 N -0.635 5.635 27 H 0.442 0.558 28 C 0.072 3.928 29 C -0.107 4.107 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.045 0.955 33 H 0.066 0.934 34 H 0.040 0.960 35 H 0.074 0.926 36 H 0.068 0.932 37 H 0.271 0.729 38 H 0.095 0.905 39 H 0.107 0.893 40 H 0.053 0.947 41 H 0.041 0.959 42 H 0.087 0.913 43 H 0.100 0.900 44 H 0.156 0.844 45 H 0.159 0.841 46 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.630 -8.211 -17.035 19.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.171 4.171 3 C -0.012 4.012 4 N -0.179 5.179 5 C -0.469 4.469 6 H 0.075 0.925 7 C -0.199 4.199 8 N -0.529 5.529 9 Si 0.800 3.200 10 H -0.206 1.206 11 H -0.197 1.197 12 H -0.188 1.188 13 C 0.235 3.765 14 O -0.521 6.521 15 C -0.162 4.162 16 C -0.124 4.124 17 C -0.105 4.105 18 C -0.071 4.071 19 C -0.123 4.123 20 C -0.118 4.118 21 C -0.035 4.035 22 N -0.276 5.276 23 H 0.288 0.712 24 C 0.374 3.626 25 O -0.484 6.484 26 N -0.281 5.281 27 H 0.285 0.715 28 C -0.029 4.029 29 C -0.128 4.128 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.064 0.936 33 H 0.085 0.915 34 H 0.059 0.941 35 H 0.092 0.908 36 H 0.086 0.914 37 H 0.081 0.919 38 H 0.113 0.887 39 H 0.125 0.875 40 H 0.072 0.928 41 H 0.060 0.940 42 H 0.105 0.895 43 H 0.118 0.882 44 H 0.174 0.826 45 H 0.176 0.824 46 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -4.696 -7.674 -17.507 19.684 hybrid contribution 0.960 0.636 0.944 1.489 sum -3.737 -7.038 -16.563 18.380 Atomic orbital electron populations 1.21636 0.93386 1.02358 1.02165 1.21890 0.97292 0.96547 1.01330 1.21604 0.80109 0.96583 1.02923 1.43786 1.05963 1.63529 1.04657 1.19254 1.12160 1.22074 0.93367 0.92537 1.26093 0.97121 0.92962 1.03722 1.69983 1.34109 1.13695 1.35132 0.85276 0.78264 0.78547 0.77957 1.20551 1.19717 1.18803 1.21624 0.88027 0.79945 0.86915 1.90472 1.16785 1.56772 1.88036 1.21638 0.99026 1.04650 0.90841 1.21171 0.96994 1.01639 0.92566 1.20590 0.95726 1.04940 0.89274 1.19771 0.98330 0.92437 0.96580 1.21158 0.96877 0.98117 0.96150 1.20379 0.98572 0.96412 0.96395 1.18259 0.96889 0.95210 0.93107 1.42796 1.43911 1.07464 1.33460 0.71171 1.16084 0.81793 0.82183 0.82570 1.91062 1.47606 1.71197 1.38571 1.42887 1.42881 1.10416 1.31875 0.71462 1.18165 1.00318 0.87343 0.97115 1.20174 0.97507 1.00446 0.94688 0.91167 0.91217 0.93604 0.91501 0.94143 0.90787 0.91375 0.91908 0.88709 0.87502 0.92789 0.93991 0.89457 0.88189 0.82644 0.82383 0.84134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.31 9.91 71.98 0.71 -2.60 16 2 C -0.13 -4.25 6.17 30.59 0.19 -4.06 16 3 C 0.11 4.51 4.69 86.38 0.41 4.92 16 4 N -0.46 -23.00 2.50 -635.54 -1.59 -24.59 16 5 C -0.34 -19.26 8.84 84.04 0.74 -18.51 16 6 H 0.06 3.44 7.82 -2.91 -0.02 3.41 16 7 C 0.00 0.18 4.95 84.93 0.42 0.60 16 8 N -0.89 -48.10 11.61 21.66 0.25 -47.85 16 9 Si 0.98 42.57 29.59 68.60 2.03 44.60 16 10 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 11 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 12 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 13 C 0.44 21.13 7.59 87.65 0.67 21.79 16 14 O -0.63 -35.94 15.89 -3.06 -0.05 -35.99 16 15 C -0.12 -3.84 4.31 29.85 0.13 -3.71 16 16 C -0.09 -2.36 4.49 30.59 0.14 -2.23 16 17 C -0.07 -1.17 5.34 29.84 0.16 -1.01 16 18 C -0.07 -1.21 5.13 -19.85 -0.10 -1.31 16 19 C -0.10 -1.52 9.68 22.29 0.22 -1.30 16 20 C -0.10 -1.34 10.07 22.34 0.22 -1.11 16 21 C 0.07 1.19 7.26 38.39 0.28 1.47 16 22 N -0.63 -11.17 6.15 -317.45 -1.95 -13.12 16 23 H 0.44 5.40 8.96 -92.70 -0.83 4.57 16 24 C 0.67 15.98 9.21 179.14 1.65 17.63 16 25 O -0.60 -18.73 18.05 -4.31 -0.08 -18.81 16 26 N -0.63 -12.45 6.15 -317.45 -1.95 -14.40 16 27 H 0.44 6.77 8.96 -92.71 -0.83 5.94 16 28 C 0.07 1.40 7.26 38.39 0.28 1.68 16 29 C -0.11 -1.95 9.71 22.34 0.22 -1.73 16 30 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.04 1.17 8.14 -2.38 -0.02 1.15 16 33 H 0.07 1.92 6.60 -2.38 -0.02 1.91 16 34 H 0.04 1.47 8.14 -2.38 -0.02 1.45 16 35 H 0.07 3.45 5.76 -2.39 -0.01 3.43 16 36 H 0.07 2.43 6.66 -2.39 -0.02 2.41 16 37 H 0.27 13.75 8.31 -92.71 -0.77 12.98 16 38 H 0.09 2.71 7.41 -2.39 -0.02 2.69 16 39 H 0.11 2.74 6.54 -2.38 -0.02 2.72 16 40 H 0.05 1.63 8.10 -2.39 -0.02 1.62 16 41 H 0.04 1.36 8.10 -2.38 -0.02 1.35 16 42 H 0.09 1.30 8.08 -2.39 -0.02 1.28 16 43 H 0.10 1.28 8.08 -2.38 -0.02 1.26 16 44 H 0.16 1.62 8.06 -2.91 -0.02 1.59 16 45 H 0.16 1.25 8.06 -2.91 -0.02 1.23 16 46 H 0.14 2.22 8.06 -2.91 -0.02 2.20 16 Total: -1.00 -78.60 382.00 2.35 -76.26 By element: Atomic # 1 Polarization: 24.03 SS G_CDS: -0.64 Total: 23.39 kcal Atomic # 6 Polarization: 4.20 SS G_CDS: 6.32 Total: 10.52 kcal Atomic # 7 Polarization: -94.72 SS G_CDS: -5.24 Total: -99.97 kcal Atomic # 8 Polarization: -54.68 SS G_CDS: -0.13 Total: -54.80 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.60 kcal Total: -78.60 2.35 -76.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000106748599.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.027 kcal (2) G-P(sol) polarization free energy of solvation -78.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds