Wall clock time and date at job start Tue Mar 31 2020 16:08:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47230 * 2 1 4 4 N 1.46496 * 109.47188 * 182.55474 * 3 2 1 5 5 C 1.36778 * 119.99808 * 241.53446 * 4 3 2 6 6 H 1.08006 * 120.00038 * 205.53884 * 5 4 3 7 7 C 1.39110 * 120.00159 * 25.54331 * 5 4 3 8 8 N 1.31321 * 119.99642 * 19.38729 * 7 5 4 9 9 Si 1.86802 * 120.00127 * 199.38828 * 7 5 4 10 10 H 1.48495 * 109.46910 * 89.99804 * 9 7 5 11 11 H 1.48504 * 109.47193 * 209.99702 * 9 7 5 12 12 H 1.48498 * 109.46943 * 329.99883 * 9 7 5 13 13 C 1.34781 * 120.00304 * 61.26252 * 4 3 2 14 14 O 1.21555 * 120.00059 * 188.32878 * 13 4 3 15 15 C 1.48063 * 119.99532 * 8.32593 * 13 4 3 16 16 C 1.39723 * 119.66362 * 353.25329 * 15 13 4 17 17 C 1.38504 * 119.23758 * 179.78927 * 16 15 13 18 18 C 1.38618 * 118.56411 * 0.48200 * 17 16 15 19 19 C 1.39575 * 119.26806 * 359.74567 * 18 17 16 20 20 C 1.48218 * 119.65329 * 179.97438 * 19 18 17 21 21 O 1.21509 * 119.99998 * 5.26335 * 20 19 18 22 22 N 1.34774 * 120.00302 * 185.25939 * 20 19 18 23 23 C 1.47027 * 125.64526 * 4.72235 * 22 20 19 24 24 C 1.54316 * 107.27263 * 180.96371 * 23 22 20 25 25 C 1.55157 * 102.86501 * 22.52474 * 24 23 22 26 26 C 1.47419 * 125.65205 * 185.01769 * 22 20 19 27 27 N 1.32389 * 120.69769 * 0.02562 * 19 18 17 28 28 H 1.09000 * 109.47342 * 304.96567 * 1 2 3 29 29 H 1.08996 * 109.47191 * 64.96678 * 1 2 3 30 30 H 1.08999 * 109.47317 * 184.96505 * 1 2 3 31 31 H 1.08998 * 109.47009 * 239.99345 * 2 1 3 32 32 H 1.09000 * 109.46893 * 119.99722 * 2 1 3 33 33 H 1.08998 * 109.47627 * 62.55165 * 3 2 1 34 34 H 1.09007 * 109.47133 * 302.55057 * 3 2 1 35 35 H 0.97002 * 119.99462 * 180.02562 * 8 7 5 36 36 H 1.07992 * 120.38238 * 0.03031 * 16 15 13 37 37 H 1.07998 * 120.71405 * 180.20360 * 17 16 15 38 38 H 1.08000 * 120.36714 * 179.71639 * 18 17 16 39 39 H 1.09000 * 109.87458 * 300.50200 * 23 22 20 40 40 H 1.08990 * 109.88397 * 61.67286 * 23 22 20 41 41 H 1.08997 * 110.92683 * 264.10768 * 24 23 22 42 42 H 1.09006 * 110.58769 * 140.78130 * 24 23 22 43 43 H 1.09000 * 111.00339 * 206.23051 * 25 24 23 44 44 H 1.09003 * 111.00685 * 82.37496 * 25 24 23 45 45 H 1.08997 * 110.37286 * 274.68508 * 26 22 20 46 46 H 1.09009 * 110.36528 * 36.88964 * 26 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5037 1.4429 -0.0616 5 6 4.2309 1.9921 0.9584 6 1 5.2246 2.3710 0.7701 7 6 3.6906 2.0628 2.2383 8 7 2.6809 1.2906 2.5683 9 14 4.4012 3.2560 3.4876 10 1 3.6942 4.5580 3.3862 11 1 4.2270 2.7033 4.8549 12 1 5.8472 3.4554 3.2148 13 6 4.1339 0.8972 -1.1206 14 8 5.3416 0.7602 -1.1049 15 6 3.3550 0.4645 -2.3032 16 6 1.9587 0.4932 -2.2598 17 6 1.2389 0.0906 -3.3725 18 6 1.9344 -0.3382 -4.4923 19 6 3.3299 -0.3465 -4.4671 20 6 4.0822 -0.8039 -5.6594 21 8 3.4889 -1.0780 -6.6838 22 7 5.4243 -0.9158 -5.6075 23 6 6.2554 -0.7128 -4.4118 24 6 7.7248 -0.9218 -4.8342 25 6 7.6843 -0.6656 -6.3640 26 6 6.3027 -1.2559 -6.7415 27 7 3.9888 0.0490 -3.3890 28 1 -0.3634 0.5889 0.8422 29 1 -0.3633 0.4348 -0.9311 30 1 -0.3634 -1.0238 0.0889 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.7146 1.9430 0.9119 34 1 1.6398 1.9693 -0.8663 35 1 2.3040 1.3402 3.4607 36 1 1.4467 0.8290 -1.3703 37 1 0.1591 0.1063 -3.3663 38 1 1.4024 -0.6628 -5.3743 39 1 6.1173 0.2996 -4.0320 40 1 5.9853 -1.4387 -3.6450 41 1 8.0497 -1.9404 -4.6223 42 1 8.3726 -0.1983 -4.3391 43 1 8.4886 -1.1988 -6.8708 44 1 7.7263 0.4014 -6.5827 45 1 6.3710 -2.3375 -6.8575 46 1 5.9313 -0.7995 -7.6592 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000155270769.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:27 Heat of formation + Delta-G solvation = 63.761264 kcal Electronic energy + Delta-G solvation = -29466.888159 eV Core-core repulsion = 25553.655372 eV Total energy + Delta-G solvation = -3913.232787 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.96212 -39.73168 -38.02768 -37.09066 -36.21122 -33.74727 -32.27128 -31.57504 -31.35483 -30.44983 -28.80285 -26.47539 -25.35124 -24.80035 -23.36314 -22.67065 -21.17759 -21.11744 -20.11156 -19.26369 -17.54195 -17.33765 -16.72970 -16.48876 -16.18043 -15.53776 -15.16458 -14.88462 -14.55385 -14.07071 -14.05841 -13.72143 -13.52463 -13.35660 -13.20694 -12.96652 -12.83664 -12.60953 -12.31718 -12.12204 -12.01565 -11.88022 -11.36068 -11.27069 -11.24349 -11.12365 -10.85405 -10.70275 -10.62948 -10.46268 -10.40706 -10.18696 -10.00529 -9.50158 -9.18176 -9.08000 -8.57574 -8.51330 -8.28580 -7.81096 -6.55540 -4.04924 0.88376 1.35479 2.82634 3.05456 3.08455 3.16356 3.20550 3.71407 3.85950 4.20450 4.42523 4.49478 4.71675 4.80371 4.93135 4.94636 5.00801 5.10678 5.18006 5.26796 5.38888 5.43898 5.50054 5.54667 5.64911 5.72808 5.76510 5.77844 5.89617 5.92474 6.01274 6.02984 6.08586 6.22152 6.25700 6.31405 6.35919 6.45326 6.54142 6.59430 6.84446 6.97207 7.07047 7.39093 7.57831 7.81833 8.05383 8.27814 8.39054 8.98554 9.16133 9.79720 10.46697 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.014648 B = 0.003912 C = 0.003177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1911.032050 B = 7156.412326 C = 8812.146911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.162 4.162 3 C 0.093 3.907 4 N -0.421 5.421 5 C -0.299 4.299 6 H 0.103 0.897 7 C 0.034 3.966 8 N -0.860 5.860 9 Si 0.927 3.073 10 H -0.276 1.276 11 H -0.283 1.283 12 H -0.267 1.267 13 C 0.487 3.513 14 O -0.559 6.559 15 C 0.099 3.901 16 C -0.187 4.187 17 C -0.108 4.108 18 C -0.109 4.109 19 C 0.056 3.944 20 C 0.592 3.408 21 O -0.547 6.547 22 N -0.602 5.602 23 C 0.114 3.886 24 C -0.136 4.136 25 C -0.133 4.133 26 C 0.105 3.895 27 N -0.410 5.410 28 H 0.062 0.938 29 H 0.048 0.952 30 H 0.053 0.947 31 H 0.072 0.928 32 H 0.092 0.908 33 H 0.122 0.878 34 H 0.055 0.945 35 H 0.272 0.728 36 H 0.225 0.775 37 H 0.139 0.861 38 H 0.141 0.859 39 H 0.094 0.906 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.083 0.917 43 H 0.081 0.919 44 H 0.075 0.925 45 H 0.067 0.933 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.762 -2.384 -9.438 9.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.199 4.199 3 C -0.030 4.030 4 N -0.139 5.139 5 C -0.427 4.427 6 H 0.121 0.879 7 C -0.172 4.172 8 N -0.498 5.498 9 Si 0.753 3.247 10 H -0.202 1.202 11 H -0.208 1.208 12 H -0.192 1.192 13 C 0.275 3.725 14 O -0.441 6.441 15 C -0.044 4.044 16 C -0.205 4.205 17 C -0.133 4.133 18 C -0.131 4.131 19 C -0.085 4.085 20 C 0.380 3.620 21 O -0.425 6.425 22 N -0.335 5.335 23 C -0.008 4.008 24 C -0.174 4.174 25 C -0.171 4.171 26 C -0.017 4.017 27 N -0.123 5.123 28 H 0.081 0.919 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.089 0.911 32 H 0.110 0.890 33 H 0.139 0.861 34 H 0.072 0.928 35 H 0.082 0.918 36 H 0.240 0.760 37 H 0.157 0.843 38 H 0.158 0.842 39 H 0.113 0.887 40 H 0.090 0.910 41 H 0.091 0.909 42 H 0.102 0.898 43 H 0.100 0.900 44 H 0.094 0.906 45 H 0.085 0.915 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.706 -2.637 -9.795 10.169 hybrid contribution -0.781 0.309 0.659 1.067 sum -1.487 -2.328 -9.137 9.545 Atomic orbital electron populations 1.21765 0.95781 1.01701 1.01437 1.22656 0.95473 0.98238 1.03544 1.22079 0.82120 0.96104 1.02745 1.43460 1.04806 1.48589 1.17026 1.19720 1.01861 1.34277 0.86865 0.87919 1.25388 0.97027 0.97116 0.97626 1.69905 1.24763 1.34227 1.20936 0.85908 0.79854 0.79952 0.79008 1.20151 1.20829 1.19154 1.17594 0.87455 0.83623 0.83812 1.90606 1.13794 1.57769 1.81941 1.21553 0.90980 0.97980 0.93838 1.25825 0.96509 0.95940 1.02275 1.21580 1.00628 0.98648 0.92439 1.22109 0.93861 0.97627 0.99494 1.20863 0.91449 1.02780 0.93370 1.17577 0.80467 0.77348 0.86624 1.90731 1.68265 1.51786 1.31756 1.48320 1.05221 1.67793 1.12153 1.22205 0.87933 1.04426 0.86254 1.22734 0.96736 1.02540 0.95377 1.22791 0.96080 1.01728 0.96543 1.22237 0.89471 0.99924 0.90066 1.67634 1.39883 1.06474 0.98276 0.91894 0.93327 0.92827 0.91074 0.88963 0.86076 0.92815 0.91781 0.75970 0.84292 0.84160 0.88748 0.90964 0.90926 0.89791 0.89999 0.90597 0.91498 0.90589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.64 37.16 0.36 -1.65 16 2 C -0.16 -2.86 4.78 -26.73 -0.13 -2.99 16 3 C 0.09 1.82 4.18 -4.05 -0.02 1.81 16 4 N -0.42 -10.04 2.76 -151.44 -0.42 -10.46 16 5 C -0.30 -7.68 9.14 -15.02 -0.14 -7.82 16 6 H 0.10 2.78 7.60 -52.48 -0.40 2.38 16 7 C 0.03 0.80 4.88 -17.45 -0.09 0.72 16 8 N -0.86 -20.32 10.34 55.50 0.57 -19.75 16 9 Si 0.93 18.95 29.60 -169.99 -5.03 13.91 16 10 H -0.28 -5.51 7.11 56.52 0.40 -5.11 16 11 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 12 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 13 C 0.49 11.90 7.30 -12.23 -0.09 11.81 16 14 O -0.56 -15.41 16.68 5.32 0.09 -15.32 16 15 C 0.10 2.05 6.34 -83.03 -0.53 1.52 16 16 C -0.19 -3.17 5.32 -38.93 -0.21 -3.37 16 17 C -0.11 -1.54 10.16 -39.34 -0.40 -1.94 16 18 C -0.11 -1.71 9.63 -38.94 -0.38 -2.09 16 19 C 0.06 1.01 6.70 -83.03 -0.56 0.46 16 20 C 0.59 10.65 7.83 -12.16 -0.10 10.56 16 21 O -0.55 -10.54 16.63 5.36 0.09 -10.45 16 22 N -0.60 -9.61 3.33 -171.50 -0.57 -10.18 16 23 C 0.11 1.81 5.44 -3.07 -0.02 1.79 16 24 C -0.14 -1.61 6.95 -24.90 -0.17 -1.78 16 25 C -0.13 -1.35 7.08 -24.58 -0.17 -1.53 16 26 C 0.11 1.31 6.89 -2.53 -0.02 1.29 16 27 N -0.41 -8.26 6.65 -6.39 -0.04 -8.31 16 28 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.05 0.55 7.33 -51.93 -0.38 0.17 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 1.29 4.10 -73.28 -0.30 0.99 16 32 H 0.09 1.91 7.58 -51.93 -0.39 1.52 16 33 H 0.12 2.55 5.55 -51.93 -0.29 2.26 16 34 H 0.05 0.94 5.80 -51.93 -0.30 0.64 16 35 H 0.27 6.08 8.31 -40.82 -0.34 5.74 16 36 H 0.23 3.59 0.61 -145.17 -0.09 3.51 16 37 H 0.14 1.46 8.06 -52.49 -0.42 1.04 16 38 H 0.14 1.96 7.65 -52.49 -0.40 1.56 16 39 H 0.09 1.74 7.01 -51.93 -0.36 1.38 16 40 H 0.07 1.27 7.91 -51.93 -0.41 0.86 16 41 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 43 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 44 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 46 H 0.08 0.94 8.09 -51.92 -0.42 0.52 16 LS Contribution 362.15 15.07 5.46 5.46 Total: -1.00 -30.19 362.15 -8.76 -38.94 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: -6.26 Total: 9.37 kcal Atomic # 6 Polarization: 9.43 SS G_CDS: -2.64 Total: 6.79 kcal Atomic # 7 Polarization: -48.24 SS G_CDS: -0.46 Total: -48.70 kcal Atomic # 8 Polarization: -25.96 SS G_CDS: 0.18 Total: -25.78 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -5.03 Total: 13.91 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -30.19 -8.76 -38.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155270769.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.706 kcal (2) G-P(sol) polarization free energy of solvation -30.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds