Wall clock time and date at job start Tue Mar 31 2020 16:08:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47230 * 2 1 4 4 N 1.46496 * 109.47188 * 182.55474 * 3 2 1 5 5 C 1.36778 * 119.99808 * 241.53446 * 4 3 2 6 6 H 1.08006 * 120.00038 * 205.53884 * 5 4 3 7 7 C 1.39110 * 120.00159 * 25.54331 * 5 4 3 8 8 N 1.31321 * 119.99642 * 19.38729 * 7 5 4 9 9 Si 1.86802 * 120.00127 * 199.38828 * 7 5 4 10 10 H 1.48495 * 109.46910 * 89.99804 * 9 7 5 11 11 H 1.48504 * 109.47193 * 209.99702 * 9 7 5 12 12 H 1.48498 * 109.46943 * 329.99883 * 9 7 5 13 13 C 1.34781 * 120.00304 * 61.26252 * 4 3 2 14 14 O 1.21555 * 120.00059 * 188.32878 * 13 4 3 15 15 C 1.48063 * 119.99532 * 8.32593 * 13 4 3 16 16 C 1.39723 * 119.66362 * 353.25329 * 15 13 4 17 17 C 1.38504 * 119.23758 * 179.78927 * 16 15 13 18 18 C 1.38618 * 118.56411 * 0.48200 * 17 16 15 19 19 C 1.39575 * 119.26806 * 359.74567 * 18 17 16 20 20 C 1.48218 * 119.65329 * 179.97438 * 19 18 17 21 21 O 1.21509 * 119.99998 * 5.26335 * 20 19 18 22 22 N 1.34774 * 120.00302 * 185.25939 * 20 19 18 23 23 C 1.47027 * 125.64526 * 4.72235 * 22 20 19 24 24 C 1.54316 * 107.27263 * 180.96371 * 23 22 20 25 25 C 1.55157 * 102.86501 * 22.52474 * 24 23 22 26 26 C 1.47419 * 125.65205 * 185.01769 * 22 20 19 27 27 N 1.32389 * 120.69769 * 0.02562 * 19 18 17 28 28 H 1.09000 * 109.47342 * 304.96567 * 1 2 3 29 29 H 1.08996 * 109.47191 * 64.96678 * 1 2 3 30 30 H 1.08999 * 109.47317 * 184.96505 * 1 2 3 31 31 H 1.08998 * 109.47009 * 239.99345 * 2 1 3 32 32 H 1.09000 * 109.46893 * 119.99722 * 2 1 3 33 33 H 1.08998 * 109.47627 * 62.55165 * 3 2 1 34 34 H 1.09007 * 109.47133 * 302.55057 * 3 2 1 35 35 H 0.97002 * 119.99462 * 180.02562 * 8 7 5 36 36 H 1.07992 * 120.38238 * 0.03031 * 16 15 13 37 37 H 1.07998 * 120.71405 * 180.20360 * 17 16 15 38 38 H 1.08000 * 120.36714 * 179.71639 * 18 17 16 39 39 H 1.09000 * 109.87458 * 300.50200 * 23 22 20 40 40 H 1.08990 * 109.88397 * 61.67286 * 23 22 20 41 41 H 1.08997 * 110.92683 * 264.10768 * 24 23 22 42 42 H 1.09006 * 110.58769 * 140.78130 * 24 23 22 43 43 H 1.09000 * 111.00339 * 206.23051 * 25 24 23 44 44 H 1.09003 * 111.00685 * 82.37496 * 25 24 23 45 45 H 1.08997 * 110.37286 * 274.68508 * 26 22 20 46 46 H 1.09009 * 110.36528 * 36.88964 * 26 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5037 1.4429 -0.0616 5 6 4.2309 1.9921 0.9584 6 1 5.2246 2.3710 0.7701 7 6 3.6906 2.0628 2.2383 8 7 2.6809 1.2906 2.5683 9 14 4.4012 3.2560 3.4876 10 1 3.6942 4.5580 3.3862 11 1 4.2270 2.7033 4.8549 12 1 5.8472 3.4554 3.2148 13 6 4.1339 0.8972 -1.1206 14 8 5.3416 0.7602 -1.1049 15 6 3.3550 0.4645 -2.3032 16 6 1.9587 0.4932 -2.2598 17 6 1.2389 0.0906 -3.3725 18 6 1.9344 -0.3382 -4.4923 19 6 3.3299 -0.3465 -4.4671 20 6 4.0822 -0.8039 -5.6594 21 8 3.4889 -1.0780 -6.6838 22 7 5.4243 -0.9158 -5.6075 23 6 6.2554 -0.7128 -4.4118 24 6 7.7248 -0.9218 -4.8342 25 6 7.6843 -0.6656 -6.3640 26 6 6.3027 -1.2559 -6.7415 27 7 3.9888 0.0490 -3.3890 28 1 -0.3634 0.5889 0.8422 29 1 -0.3633 0.4348 -0.9311 30 1 -0.3634 -1.0238 0.0889 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.7146 1.9430 0.9119 34 1 1.6398 1.9693 -0.8663 35 1 2.3040 1.3402 3.4607 36 1 1.4467 0.8290 -1.3703 37 1 0.1591 0.1063 -3.3663 38 1 1.4024 -0.6628 -5.3743 39 1 6.1173 0.2996 -4.0320 40 1 5.9853 -1.4387 -3.6450 41 1 8.0497 -1.9404 -4.6223 42 1 8.3726 -0.1983 -4.3391 43 1 8.4886 -1.1988 -6.8708 44 1 7.7263 0.4014 -6.5827 45 1 6.3710 -2.3375 -6.8575 46 1 5.9313 -0.7995 -7.6592 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000155270769.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:26 Heat of formation + Delta-G solvation = 45.136598 kcal Electronic energy + Delta-G solvation = -29467.695785 eV Core-core repulsion = 25553.655372 eV Total energy + Delta-G solvation = -3914.040413 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.43423 -41.11467 -39.53042 -38.38248 -37.92969 -35.45633 -33.62139 -33.19943 -32.75160 -31.78511 -29.91903 -28.03393 -26.95561 -26.14290 -24.90457 -23.94647 -22.55163 -22.21093 -21.49186 -20.77562 -19.24336 -18.73802 -18.21140 -17.83898 -17.50839 -17.15665 -16.58214 -16.55177 -15.99433 -15.75543 -15.56022 -15.04907 -14.93500 -14.58838 -14.30776 -14.29577 -14.16784 -13.83685 -13.81030 -13.63126 -13.29443 -13.26997 -12.90296 -12.81908 -12.50237 -12.25701 -12.19308 -12.17595 -12.10330 -11.81672 -11.68117 -11.59947 -11.49766 -10.96512 -10.80419 -10.65571 -10.20378 -9.96775 -9.65763 -9.63346 -8.39861 -6.00089 -0.49679 -0.00954 1.36236 1.45460 1.50152 1.55658 1.82690 2.09007 2.20386 2.61128 2.82664 3.11184 3.16728 3.55507 3.66102 3.68688 3.80087 3.85671 3.96274 4.03467 4.10598 4.21998 4.31833 4.36520 4.42462 4.47879 4.60855 4.65103 4.70093 4.83304 4.89409 4.95965 4.99256 5.00336 5.06710 5.10533 5.13822 5.22117 5.31074 5.37610 5.42196 5.48529 5.52794 5.64077 6.02999 6.25630 6.39794 6.64053 6.96661 7.10766 7.32860 7.94986 8.60412 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.014648 B = 0.003912 C = 0.003177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1911.032050 B = 7156.412326 C = 8812.146911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.152 4.152 3 C 0.091 3.909 4 N -0.428 5.428 5 C -0.344 4.344 6 H 0.071 0.929 7 C 0.011 3.989 8 N -0.865 5.865 9 Si 0.987 3.013 10 H -0.261 1.261 11 H -0.274 1.274 12 H -0.280 1.280 13 C 0.471 3.529 14 O -0.613 6.613 15 C 0.068 3.932 16 C -0.177 4.177 17 C -0.085 4.085 18 C -0.097 4.097 19 C 0.034 3.966 20 C 0.584 3.416 21 O -0.564 6.564 22 N -0.603 5.603 23 C 0.119 3.881 24 C -0.130 4.130 25 C -0.118 4.118 26 C 0.097 3.903 27 N -0.431 5.431 28 H 0.061 0.939 29 H 0.081 0.919 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.054 0.946 33 H 0.108 0.892 34 H 0.083 0.917 35 H 0.279 0.721 36 H 0.234 0.766 37 H 0.196 0.804 38 H 0.165 0.835 39 H 0.061 0.939 40 H 0.045 0.955 41 H 0.088 0.912 42 H 0.086 0.914 43 H 0.117 0.883 44 H 0.075 0.925 45 H 0.081 0.919 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.061 -2.651 -10.652 11.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.189 4.189 3 C -0.031 4.031 4 N -0.145 5.145 5 C -0.472 4.472 6 H 0.089 0.911 7 C -0.194 4.194 8 N -0.502 5.502 9 Si 0.811 3.189 10 H -0.186 1.186 11 H -0.199 1.199 12 H -0.205 1.205 13 C 0.261 3.739 14 O -0.499 6.499 15 C -0.073 4.073 16 C -0.196 4.196 17 C -0.110 4.110 18 C -0.118 4.118 19 C -0.107 4.107 20 C 0.372 3.628 21 O -0.444 6.444 22 N -0.335 5.335 23 C -0.004 4.004 24 C -0.168 4.168 25 C -0.156 4.156 26 C -0.024 4.024 27 N -0.144 5.144 28 H 0.080 0.920 29 H 0.100 0.900 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.073 0.927 33 H 0.126 0.874 34 H 0.100 0.900 35 H 0.089 0.911 36 H 0.249 0.751 37 H 0.213 0.787 38 H 0.183 0.817 39 H 0.079 0.921 40 H 0.064 0.936 41 H 0.107 0.893 42 H 0.105 0.895 43 H 0.136 0.864 44 H 0.094 0.906 45 H 0.099 0.901 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -3.041 -2.907 -11.001 11.778 hybrid contribution -0.082 0.333 0.991 1.049 sum -3.123 -2.574 -10.009 10.796 Atomic orbital electron populations 1.21745 0.91821 1.03157 1.03223 1.22536 0.98696 0.96155 1.01544 1.22303 0.79769 0.97775 1.03227 1.43674 1.06505 1.47871 1.16480 1.19599 1.01873 1.37031 0.88667 0.91088 1.26025 0.97210 0.97847 0.98305 1.69964 1.24699 1.33932 1.21583 0.85029 0.78465 0.78547 0.76891 1.18571 1.19853 1.20506 1.18291 0.87383 0.83112 0.85145 1.90535 1.16130 1.60000 1.83242 1.21105 0.92392 1.00779 0.93027 1.25807 0.94661 0.95493 1.03601 1.22128 1.02964 0.95692 0.90169 1.22496 0.92743 0.95810 1.00761 1.21198 0.93034 1.03487 0.92953 1.17690 0.81197 0.77490 0.86444 1.90703 1.68680 1.52971 1.32064 1.48483 1.05113 1.66702 1.13170 1.22031 0.90734 1.01582 0.86021 1.22726 0.93542 1.03638 0.96902 1.22792 0.95732 1.02169 0.94912 1.22538 0.89939 1.01019 0.88891 1.67505 1.41109 1.06987 0.98802 0.91952 0.90018 0.91247 0.91391 0.92701 0.87440 0.90010 0.91059 0.75147 0.78724 0.81707 0.92101 0.93601 0.89328 0.89497 0.86425 0.90584 0.90097 0.90382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.35 9.64 71.98 0.69 -2.65 16 2 C -0.15 -5.27 4.78 30.59 0.15 -5.13 16 3 C 0.09 3.60 4.18 86.38 0.36 3.96 16 4 N -0.43 -21.53 2.76 -751.31 -2.07 -23.60 16 5 C -0.34 -18.75 9.14 84.13 0.77 -17.98 16 6 H 0.07 4.21 7.60 -2.91 -0.02 4.18 16 7 C 0.01 0.54 4.88 84.98 0.41 0.96 16 8 N -0.87 -41.34 10.34 21.69 0.22 -41.12 16 9 Si 0.99 39.50 29.60 68.60 2.03 41.53 16 10 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 11 H -0.27 -10.50 7.11 99.48 0.71 -9.79 16 12 H -0.28 -11.71 7.11 99.48 0.71 -11.01 16 13 C 0.47 24.62 7.30 86.85 0.63 25.25 16 14 O -0.61 -36.93 16.68 -3.89 -0.06 -37.00 16 15 C 0.07 2.92 6.34 42.02 0.27 3.19 16 16 C -0.18 -5.71 5.32 22.69 0.12 -5.59 16 17 C -0.08 -2.07 10.16 22.42 0.23 -1.84 16 18 C -0.10 -2.77 9.63 22.68 0.22 -2.56 16 19 C 0.03 1.23 6.70 42.04 0.28 1.51 16 20 C 0.58 21.06 7.83 86.90 0.68 21.74 16 21 O -0.56 -21.25 16.63 -3.74 -0.06 -21.32 16 22 N -0.60 -19.52 3.33 -814.79 -2.71 -22.23 16 23 C 0.12 4.00 5.44 86.73 0.47 4.48 16 24 C -0.13 -3.05 6.95 31.78 0.22 -2.83 16 25 C -0.12 -2.18 7.08 31.99 0.23 -1.96 16 26 C 0.10 2.30 6.89 86.86 0.60 2.90 16 27 N -0.43 -18.14 6.65 -174.12 -1.16 -19.29 16 28 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.08 1.40 7.33 -2.39 -0.02 1.39 16 30 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.07 2.42 4.10 -22.44 -0.09 2.33 16 32 H 0.05 2.32 7.58 -2.39 -0.02 2.30 16 33 H 0.11 4.54 5.55 -2.39 -0.01 4.53 16 34 H 0.08 2.75 5.80 -2.38 -0.01 2.74 16 35 H 0.28 12.38 8.31 -92.71 -0.77 11.61 16 36 H 0.23 6.95 0.61 -89.97 -0.06 6.89 16 37 H 0.20 2.67 8.06 -2.91 -0.02 2.65 16 38 H 0.17 3.96 7.65 -2.91 -0.02 3.94 16 39 H 0.06 2.46 7.01 -2.39 -0.02 2.44 16 40 H 0.05 1.75 7.91 -2.39 -0.02 1.73 16 41 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 42 H 0.09 2.00 8.14 -2.38 -0.02 1.98 16 43 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 44 H 0.08 1.42 8.14 -2.39 -0.02 1.41 16 45 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 46 H 0.08 1.83 8.09 -2.38 -0.02 1.81 16 Total: -1.00 -73.18 362.15 3.40 -69.78 By element: Atomic # 1 Polarization: 28.92 SS G_CDS: 0.88 Total: 29.80 kcal Atomic # 6 Polarization: 17.11 SS G_CDS: 6.33 Total: 23.45 kcal Atomic # 7 Polarization: -100.53 SS G_CDS: -5.72 Total: -106.24 kcal Atomic # 8 Polarization: -58.19 SS G_CDS: -0.13 Total: -58.31 kcal Atomic # 14 Polarization: 39.50 SS G_CDS: 2.03 Total: 41.53 kcal Total: -73.18 3.40 -69.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155270769.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.914 kcal (2) G-P(sol) polarization free energy of solvation -73.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds