Wall clock time and date at job start Tue Mar 31 2020 16:08:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.47152 * 2 1 4 4 N 1.46500 * 109.47489 * 179.97438 * 3 2 1 5 5 C 1.36897 * 119.99914 * 279.68870 * 4 3 2 6 6 H 1.08005 * 120.00464 * 37.34076 * 5 4 3 7 7 C 1.39011 * 120.00345 * 217.33379 * 5 4 3 8 8 N 1.31390 * 119.99841 * 26.20456 * 7 5 4 9 9 Si 1.86803 * 120.00405 * 206.20512 * 7 5 4 10 10 H 1.48505 * 109.46948 * 90.00229 * 9 7 5 11 11 H 1.48502 * 109.47051 * 209.99826 * 9 7 5 12 12 H 1.48498 * 109.47070 * 329.99901 * 9 7 5 13 13 C 1.34781 * 119.99767 * 99.69112 * 4 3 2 14 14 O 1.21633 * 119.99765 * 186.93192 * 13 4 3 15 15 C 1.47419 * 119.99836 * 6.93211 * 13 4 3 16 16 C 1.39838 * 120.07210 * 330.92278 * 15 13 4 17 17 C 1.37705 * 120.12991 * 180.56081 * 16 15 13 18 18 C 1.39064 * 120.12787 * 359.48526 * 17 16 15 19 19 C 1.39792 * 119.95564 * 359.89326 * 18 17 16 20 20 C 1.38018 * 120.17833 * 0.67135 * 19 18 17 21 21 N 1.40363 * 119.47932 * 181.88724 * 19 18 17 22 22 C 1.34925 * 118.42246 * 48.65219 * 21 19 18 23 23 O 1.21293 * 120.27737 * 183.38956 * 22 21 19 24 24 C 1.50571 * 119.45370 * 3.40618 * 22 21 19 25 25 C 1.52602 * 110.32679 * 283.91975 * 24 22 21 26 26 N 1.39017 * 120.24198 * 179.06349 * 18 17 16 27 27 C 1.46889 * 111.00619 * 227.83532 * 26 18 17 28 28 H 1.08996 * 109.47182 * 299.99564 * 1 2 3 29 29 H 1.09004 * 109.47480 * 59.99977 * 1 2 3 30 30 H 1.09001 * 109.46775 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47208 * 240.00253 * 2 1 3 32 32 H 1.08996 * 109.47741 * 119.99893 * 2 1 3 33 33 H 1.09005 * 109.46857 * 60.00039 * 3 2 1 34 34 H 1.09004 * 109.46947 * 300.00350 * 3 2 1 35 35 H 0.96996 * 120.00128 * 184.99268 * 8 7 5 36 36 H 1.08000 * 119.93538 * 0.28226 * 16 15 13 37 37 H 1.07998 * 119.93455 * 179.74280 * 17 16 15 38 38 H 1.08002 * 120.13219 * 179.40596 * 20 19 18 39 39 H 0.97003 * 120.78543 * 228.65341 * 21 19 18 40 40 H 1.09001 * 109.33118 * 163.65564 * 24 22 21 41 41 H 1.08998 * 109.32688 * 44.18019 * 24 22 21 42 42 H 1.08999 * 109.26612 * 283.59802 * 25 24 22 43 43 H 1.08998 * 109.26958 * 164.12361 * 25 24 22 44 44 H 1.09003 * 109.47384 * 64.70628 * 27 26 18 45 45 H 1.08997 * 109.47829 * 184.71232 * 27 26 18 46 46 H 1.09006 * 109.47039 * 304.71221 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1889 1.2433 1.1696 6 1 3.8147 0.5429 1.9016 7 6 5.3653 1.9423 1.4145 8 7 5.5670 3.1089 0.8447 9 14 6.6593 1.2231 2.5537 10 1 7.6077 0.3955 1.7657 11 1 7.3994 2.3247 3.2202 12 1 5.9996 0.3775 3.5809 13 6 4.1793 1.6390 -1.1497 14 8 5.3890 1.5144 -1.1744 15 6 3.4507 2.0048 -2.3780 16 6 2.1302 1.5827 -2.5614 17 6 1.4523 1.9139 -3.7134 18 6 2.0747 2.6785 -4.6941 19 6 3.3902 3.1138 -4.5097 20 6 4.0787 2.7752 -3.3624 21 7 3.9952 3.9183 -5.4879 22 6 3.3160 4.9894 -5.9485 23 8 3.7803 5.6720 -6.8372 24 6 1.9771 5.3305 -5.3501 25 6 0.9053 4.3774 -5.8712 26 7 1.3993 2.9979 -5.8665 27 6 2.2359 2.7343 -7.0447 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.6766 1.9563 0.8900 34 1 1.6766 1.9564 -0.8900 35 1 6.4166 3.5632 0.9572 36 1 1.6426 0.9919 -1.8001 37 1 0.4340 1.5827 -3.8535 38 1 5.0983 3.1039 -3.2250 39 1 4.8805 3.7092 -5.8248 40 1 1.7120 6.3531 -5.6184 41 1 2.0358 5.2487 -4.2648 42 1 0.6369 4.6600 -6.8891 43 1 0.0229 4.4459 -5.2349 44 1 2.4334 1.6648 -7.1182 45 1 1.7163 3.0704 -7.9419 46 1 3.1792 3.2720 -6.9482 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174728613.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:08 Heat of formation + Delta-G solvation = 31.842554 kcal Electronic energy + Delta-G solvation = -29789.338583 eV Core-core repulsion = 25874.721697 eV Total energy + Delta-G solvation = -3914.616886 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.78998 -39.46213 -38.13767 -36.32098 -35.49444 -34.78753 -32.88464 -31.62214 -31.22249 -30.05340 -29.27243 -26.11665 -25.82963 -25.23961 -23.90731 -22.59084 -21.49946 -20.88326 -20.60808 -19.55141 -17.98676 -17.28304 -16.85906 -16.36999 -16.31599 -15.59067 -15.44206 -15.03712 -14.79540 -14.27456 -14.02663 -13.90729 -13.56692 -13.42172 -13.40365 -13.10652 -12.98599 -12.74042 -12.55507 -12.26471 -11.94641 -11.86629 -11.67490 -11.60492 -11.42169 -11.20423 -10.95372 -10.89060 -10.74686 -10.58022 -10.37628 -10.26486 -10.04467 -9.85775 -8.86668 -8.83661 -8.33264 -8.19674 -8.02360 -7.29518 -6.27926 -3.90986 1.12654 1.47286 2.34390 3.01766 3.28323 3.36000 3.39932 3.57250 3.66514 4.17397 4.30682 4.54297 4.66272 4.78888 4.82225 4.97000 5.18179 5.21766 5.26582 5.31848 5.32861 5.38664 5.48972 5.52246 5.55951 5.57260 5.63111 5.71467 5.82640 5.84940 5.92745 6.06114 6.10318 6.22110 6.29417 6.34813 6.41743 6.56868 6.61230 6.69740 6.74886 6.81098 6.85379 7.00497 7.39019 7.50943 7.90850 8.10162 8.89245 9.05940 9.51591 10.14808 10.79608 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.014794 B = 0.004071 C = 0.003410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.198745 B = 6876.477704 C = 8210.287567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.146 4.146 3 C 0.066 3.934 4 N -0.433 5.433 5 C -0.345 4.345 6 H 0.085 0.915 7 C 0.077 3.923 8 N -0.821 5.821 9 Si 0.906 3.094 10 H -0.276 1.276 11 H -0.288 1.288 12 H -0.272 1.272 13 C 0.499 3.501 14 O -0.543 6.543 15 C -0.072 4.072 16 C -0.136 4.136 17 C -0.087 4.087 18 C 0.072 3.928 19 C 0.088 3.912 20 C -0.075 4.075 21 N -0.671 5.671 22 C 0.530 3.470 23 O -0.535 6.535 24 C -0.181 4.181 25 C 0.071 3.929 26 N -0.501 5.501 27 C -0.010 4.010 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.092 0.908 35 H 0.267 0.733 36 H 0.168 0.832 37 H 0.134 0.866 38 H 0.134 0.866 39 H 0.411 0.589 40 H 0.106 0.894 41 H 0.098 0.902 42 H 0.084 0.916 43 H 0.094 0.906 44 H 0.071 0.929 45 H 0.068 0.932 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.384 -0.327 -9.875 15.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.184 4.184 3 C -0.058 4.058 4 N -0.152 5.152 5 C -0.471 4.471 6 H 0.103 0.897 7 C -0.135 4.135 8 N -0.454 5.454 9 Si 0.732 3.268 10 H -0.201 1.201 11 H -0.214 1.214 12 H -0.197 1.197 13 C 0.288 3.712 14 O -0.423 6.423 15 C -0.077 4.077 16 C -0.155 4.155 17 C -0.106 4.106 18 C -0.025 4.025 19 C -0.007 4.007 20 C -0.096 4.096 21 N -0.320 5.320 22 C 0.319 3.681 23 O -0.411 6.411 24 C -0.222 4.222 25 C -0.056 4.056 26 N -0.220 5.220 27 C -0.158 4.158 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.090 0.910 33 H 0.083 0.917 34 H 0.109 0.891 35 H 0.077 0.923 36 H 0.185 0.815 37 H 0.152 0.848 38 H 0.152 0.848 39 H 0.251 0.749 40 H 0.125 0.875 41 H 0.116 0.884 42 H 0.103 0.897 43 H 0.112 0.888 44 H 0.090 0.910 45 H 0.087 0.913 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -11.993 -0.016 -10.310 15.815 hybrid contribution 1.836 0.191 0.499 1.913 sum -10.156 0.175 -9.811 14.123 Atomic orbital electron populations 1.21757 0.96000 1.01344 1.01716 1.21980 0.94981 0.98629 1.02835 1.22578 0.84549 0.95634 1.03024 1.43209 1.02839 1.62896 1.06219 1.19035 1.08285 1.23315 0.96503 0.89736 1.25102 0.99180 0.92753 0.96467 1.69920 1.23470 1.10524 1.41461 0.86311 0.81772 0.78967 0.79743 1.20144 1.21368 1.19717 1.17581 0.87306 0.84331 0.81965 1.90615 1.13750 1.53730 1.84230 1.20459 0.93858 0.97054 0.96319 1.22562 0.94147 1.01138 0.97653 1.20790 1.00360 0.97332 0.92130 1.18563 0.91235 1.00379 0.92288 1.18191 0.94538 0.97742 0.90204 1.21027 1.00837 0.97517 0.90237 1.43971 1.20937 1.26797 1.40333 1.20659 0.87260 0.78640 0.81548 1.90759 1.70265 1.50208 1.29912 1.22394 0.92876 1.03380 1.03572 1.22129 0.96548 0.84173 1.02754 1.58876 1.39471 1.22535 1.01132 1.23070 0.98164 1.03002 0.91529 0.92630 0.92837 0.92934 0.91871 0.91009 0.91668 0.89077 0.92256 0.81505 0.84850 0.84774 0.74947 0.87517 0.88391 0.89714 0.88769 0.91003 0.91300 0.92020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.84 37.15 0.37 -1.30 16 2 C -0.15 -2.17 5.24 -26.73 -0.14 -2.31 16 3 C 0.07 1.18 4.84 -4.04 -0.02 1.16 16 4 N -0.43 -10.27 2.57 -116.03 -0.30 -10.57 16 5 C -0.35 -9.09 9.18 -15.00 -0.14 -9.23 16 6 H 0.08 2.12 7.96 -52.48 -0.42 1.71 16 7 C 0.08 2.10 4.11 -17.45 -0.07 2.03 16 8 N -0.82 -23.63 11.94 55.50 0.66 -22.97 16 9 Si 0.91 21.40 29.63 -169.99 -5.04 16.36 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 11 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 12 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 13 C 0.50 12.31 6.65 -12.52 -0.08 12.23 16 14 O -0.54 -15.66 14.50 5.25 0.08 -15.59 16 15 C -0.07 -1.41 5.62 -104.94 -0.59 -2.00 16 16 C -0.14 -2.10 7.51 -39.18 -0.29 -2.39 16 17 C -0.09 -1.13 9.95 -39.47 -0.39 -1.53 16 18 C 0.07 0.97 4.35 -83.72 -0.36 0.60 16 19 C 0.09 1.31 5.11 -83.45 -0.43 0.88 16 20 C -0.07 -1.35 9.51 -39.04 -0.37 -1.72 16 21 N -0.67 -9.16 3.48 -9.74 -0.03 -9.19 16 22 C 0.53 7.41 5.21 -10.98 -0.06 7.36 16 23 O -0.54 -8.96 17.95 5.55 0.10 -8.86 16 24 C -0.18 -2.03 5.41 -28.15 -0.15 -2.19 16 25 C 0.07 0.69 6.04 -4.23 -0.03 0.67 16 26 N -0.50 -5.81 4.84 -179.38 -0.87 -6.68 16 27 C -0.01 -0.11 8.81 60.06 0.53 0.41 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.05 0.52 7.84 -51.93 -0.41 0.11 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.95 7.23 -51.93 -0.38 0.57 16 32 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.06 1.19 8.11 -51.93 -0.42 0.76 16 34 H 0.09 1.48 3.81 -55.41 -0.21 1.27 16 35 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 36 H 0.17 2.40 2.26 -52.49 -0.12 2.28 16 37 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 38 H 0.13 2.63 7.91 -52.49 -0.42 2.22 16 39 H 0.41 5.20 8.95 -40.82 -0.37 4.83 16 40 H 0.11 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.10 1.17 7.32 -51.93 -0.38 0.79 16 42 H 0.08 0.73 7.69 -51.93 -0.40 0.33 16 43 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 44 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.07 0.69 7.80 -51.93 -0.40 0.29 16 46 H 0.06 0.77 3.60 -52.62 -0.19 0.59 16 LS Contribution 359.32 15.07 5.41 5.41 Total: -1.00 -33.15 359.32 -8.42 -41.57 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: -6.20 Total: 7.83 kcal Atomic # 6 Polarization: 4.92 SS G_CDS: -2.23 Total: 2.68 kcal Atomic # 7 Polarization: -48.87 SS G_CDS: -0.54 Total: -49.41 kcal Atomic # 8 Polarization: -24.63 SS G_CDS: 0.18 Total: -24.45 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.04 Total: 16.36 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.15 -8.42 -41.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174728613.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.411 kcal (2) G-P(sol) polarization free energy of solvation -33.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.569 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds