Wall clock time and date at job start Tue Mar 31 2020 16:08:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.47152 * 2 1 4 4 N 1.46500 * 109.47489 * 179.97438 * 3 2 1 5 5 C 1.36897 * 119.99914 * 279.68870 * 4 3 2 6 6 H 1.08005 * 120.00464 * 37.34076 * 5 4 3 7 7 C 1.39011 * 120.00345 * 217.33379 * 5 4 3 8 8 N 1.31390 * 119.99841 * 26.20456 * 7 5 4 9 9 Si 1.86803 * 120.00405 * 206.20512 * 7 5 4 10 10 H 1.48505 * 109.46948 * 90.00229 * 9 7 5 11 11 H 1.48502 * 109.47051 * 209.99826 * 9 7 5 12 12 H 1.48498 * 109.47070 * 329.99901 * 9 7 5 13 13 C 1.34781 * 119.99767 * 99.69112 * 4 3 2 14 14 O 1.21633 * 119.99765 * 186.93192 * 13 4 3 15 15 C 1.47419 * 119.99836 * 6.93211 * 13 4 3 16 16 C 1.39838 * 120.07210 * 330.92278 * 15 13 4 17 17 C 1.37705 * 120.12991 * 180.56081 * 16 15 13 18 18 C 1.39064 * 120.12787 * 359.48526 * 17 16 15 19 19 C 1.39792 * 119.95564 * 359.89326 * 18 17 16 20 20 C 1.38018 * 120.17833 * 0.67135 * 19 18 17 21 21 N 1.40363 * 119.47932 * 181.88724 * 19 18 17 22 22 C 1.34925 * 118.42246 * 48.65219 * 21 19 18 23 23 O 1.21293 * 120.27737 * 183.38956 * 22 21 19 24 24 C 1.50571 * 119.45370 * 3.40618 * 22 21 19 25 25 C 1.52602 * 110.32679 * 283.91975 * 24 22 21 26 26 N 1.39017 * 120.24198 * 179.06349 * 18 17 16 27 27 C 1.46889 * 111.00619 * 227.83532 * 26 18 17 28 28 H 1.08996 * 109.47182 * 299.99564 * 1 2 3 29 29 H 1.09004 * 109.47480 * 59.99977 * 1 2 3 30 30 H 1.09001 * 109.46775 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47208 * 240.00253 * 2 1 3 32 32 H 1.08996 * 109.47741 * 119.99893 * 2 1 3 33 33 H 1.09005 * 109.46857 * 60.00039 * 3 2 1 34 34 H 1.09004 * 109.46947 * 300.00350 * 3 2 1 35 35 H 0.96996 * 120.00128 * 184.99268 * 8 7 5 36 36 H 1.08000 * 119.93538 * 0.28226 * 16 15 13 37 37 H 1.07998 * 119.93455 * 179.74280 * 17 16 15 38 38 H 1.08002 * 120.13219 * 179.40596 * 20 19 18 39 39 H 0.97003 * 120.78543 * 228.65341 * 21 19 18 40 40 H 1.09001 * 109.33118 * 163.65564 * 24 22 21 41 41 H 1.08998 * 109.32688 * 44.18019 * 24 22 21 42 42 H 1.08999 * 109.26612 * 283.59802 * 25 24 22 43 43 H 1.08998 * 109.26958 * 164.12361 * 25 24 22 44 44 H 1.09003 * 109.47384 * 64.70628 * 27 26 18 45 45 H 1.08997 * 109.47829 * 184.71232 * 27 26 18 46 46 H 1.09006 * 109.47039 * 304.71221 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1889 1.2433 1.1696 6 1 3.8147 0.5429 1.9016 7 6 5.3653 1.9423 1.4145 8 7 5.5670 3.1089 0.8447 9 14 6.6593 1.2231 2.5537 10 1 7.6077 0.3955 1.7657 11 1 7.3994 2.3247 3.2202 12 1 5.9996 0.3775 3.5809 13 6 4.1793 1.6390 -1.1497 14 8 5.3890 1.5144 -1.1744 15 6 3.4507 2.0048 -2.3780 16 6 2.1302 1.5827 -2.5614 17 6 1.4523 1.9139 -3.7134 18 6 2.0747 2.6785 -4.6941 19 6 3.3902 3.1138 -4.5097 20 6 4.0787 2.7752 -3.3624 21 7 3.9952 3.9183 -5.4879 22 6 3.3160 4.9894 -5.9485 23 8 3.7803 5.6720 -6.8372 24 6 1.9771 5.3305 -5.3501 25 6 0.9053 4.3774 -5.8712 26 7 1.3993 2.9979 -5.8665 27 6 2.2359 2.7343 -7.0447 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.6766 1.9563 0.8900 34 1 1.6766 1.9564 -0.8900 35 1 6.4166 3.5632 0.9572 36 1 1.6426 0.9919 -1.8001 37 1 0.4340 1.5827 -3.8535 38 1 5.0983 3.1039 -3.2250 39 1 4.8805 3.7092 -5.8248 40 1 1.7120 6.3531 -5.6184 41 1 2.0358 5.2487 -4.2648 42 1 0.6369 4.6600 -6.8891 43 1 0.0229 4.4459 -5.2349 44 1 2.4334 1.6648 -7.1182 45 1 1.7163 3.0704 -7.9419 46 1 3.1792 3.2720 -6.9482 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174728613.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:07 Heat of formation + Delta-G solvation = 8.979354 kcal Electronic energy + Delta-G solvation = -29790.330006 eV Core-core repulsion = 25874.721697 eV Total energy + Delta-G solvation = -3915.608308 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.90165 -40.99647 -39.45467 -37.56166 -37.09209 -36.03834 -34.62353 -32.96380 -32.51585 -31.30483 -30.54371 -27.58278 -26.97380 -26.54497 -25.24848 -23.90018 -22.73649 -22.08496 -21.80916 -21.06334 -19.37882 -18.45667 -18.26390 -17.82671 -17.54420 -17.06185 -16.59526 -16.34556 -16.22448 -15.73421 -15.62310 -15.21658 -15.12126 -14.76582 -14.55530 -14.15114 -14.01487 -13.91043 -13.66556 -13.54520 -13.42698 -13.25810 -12.98305 -12.85624 -12.74911 -12.59553 -12.50028 -12.26170 -12.14693 -12.12105 -11.72116 -11.62309 -11.23768 -11.09933 -10.81460 -10.22130 -10.00765 -9.36269 -9.31604 -9.18325 -8.31498 -5.97547 -0.14817 0.20577 1.22816 1.35391 1.45049 1.48488 1.90128 2.15494 2.33238 2.67917 2.79612 3.13227 3.26250 3.31802 3.72538 3.87624 3.94093 3.97377 4.09036 4.24590 4.28365 4.33874 4.38294 4.41256 4.48426 4.57809 4.62510 4.72166 4.75721 4.85276 4.88750 4.89519 4.96744 5.09060 5.17530 5.18515 5.31137 5.37303 5.40258 5.46322 5.51073 5.61092 5.65519 5.79209 5.88697 6.11565 6.29489 6.78787 6.93531 7.16107 7.60516 8.26621 8.75780 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.014794 B = 0.004071 C = 0.003410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.198745 B = 6876.477704 C = 8210.287567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.138 4.138 3 C 0.062 3.938 4 N -0.449 5.449 5 C -0.360 4.360 6 H 0.090 0.910 7 C 0.028 3.972 8 N -0.863 5.863 9 Si 0.960 3.040 10 H -0.294 1.294 11 H -0.284 1.284 12 H -0.248 1.248 13 C 0.490 3.510 14 O -0.602 6.602 15 C -0.104 4.104 16 C -0.123 4.123 17 C -0.067 4.067 18 C 0.092 3.908 19 C 0.096 3.904 20 C -0.090 4.090 21 N -0.670 5.670 22 C 0.528 3.472 23 O -0.566 6.566 24 C -0.178 4.178 25 C 0.070 3.930 26 N -0.495 5.495 27 C -0.013 4.013 28 H 0.058 0.942 29 H 0.076 0.924 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.052 0.948 33 H 0.059 0.941 34 H 0.114 0.886 35 H 0.260 0.740 36 H 0.181 0.819 37 H 0.178 0.822 38 H 0.101 0.899 39 H 0.411 0.589 40 H 0.125 0.875 41 H 0.091 0.909 42 H 0.104 0.896 43 H 0.122 0.878 44 H 0.072 0.928 45 H 0.087 0.913 46 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.665 -0.904 -11.385 20.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.176 4.176 3 C -0.060 4.060 4 N -0.167 5.167 5 C -0.487 4.487 6 H 0.107 0.893 7 C -0.180 4.180 8 N -0.498 5.498 9 Si 0.785 3.215 10 H -0.221 1.221 11 H -0.210 1.210 12 H -0.172 1.172 13 C 0.280 3.720 14 O -0.486 6.486 15 C -0.108 4.108 16 C -0.141 4.141 17 C -0.086 4.086 18 C -0.005 4.005 19 C 0.001 3.999 20 C -0.112 4.112 21 N -0.319 5.319 22 C 0.319 3.681 23 O -0.444 6.444 24 C -0.220 4.220 25 C -0.056 4.056 26 N -0.213 5.213 27 C -0.160 4.160 28 H 0.077 0.923 29 H 0.095 0.905 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.131 0.869 35 H 0.069 0.931 36 H 0.197 0.803 37 H 0.195 0.805 38 H 0.119 0.881 39 H 0.251 0.749 40 H 0.143 0.857 41 H 0.110 0.890 42 H 0.123 0.877 43 H 0.140 0.860 44 H 0.091 0.909 45 H 0.106 0.894 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -16.339 -0.607 -11.796 20.162 hybrid contribution 3.089 0.370 0.770 3.205 sum -13.250 -0.237 -11.027 17.240 Atomic orbital electron populations 1.21727 0.92326 1.02931 1.03087 1.21892 0.97990 0.95823 1.01914 1.22855 0.81116 0.98147 1.03833 1.43447 1.05248 1.62709 1.05315 1.19330 1.09045 1.23031 0.97291 0.89251 1.25913 1.01099 0.92984 0.97956 1.70013 1.23428 1.12010 1.44322 0.85466 0.79300 0.78340 0.78414 1.22070 1.20951 1.17184 1.18434 0.87084 0.82797 0.83647 1.90552 1.16497 1.55925 1.85660 1.20100 0.95807 1.00131 0.94767 1.22590 0.92139 1.00435 0.98973 1.21149 1.01706 0.95491 0.90259 1.18799 0.90176 0.98645 0.92922 1.18131 0.95132 0.97495 0.89139 1.20803 0.99864 0.98808 0.91739 1.44033 1.21167 1.26893 1.39778 1.21219 0.88086 0.77853 0.80971 1.90746 1.71214 1.50999 1.31445 1.22488 0.91516 1.05091 1.02885 1.22348 0.96383 0.82173 1.04659 1.59028 1.38426 1.23842 1.00052 1.23109 0.97797 1.02976 0.92163 0.92300 0.90480 0.91259 0.91930 0.92940 0.92204 0.86904 0.93077 0.80251 0.80451 0.88065 0.74905 0.85724 0.89023 0.87749 0.86001 0.90942 0.89399 0.93504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.62 9.84 71.98 0.71 -1.91 16 2 C -0.14 -3.86 5.24 30.59 0.16 -3.70 16 3 C 0.06 2.20 4.84 86.38 0.42 2.62 16 4 N -0.45 -21.97 2.57 -639.24 -1.64 -23.61 16 5 C -0.36 -19.65 9.18 84.09 0.77 -18.87 16 6 H 0.09 4.61 7.96 -2.91 -0.02 4.59 16 7 C 0.03 1.58 4.11 84.94 0.35 1.93 16 8 N -0.86 -52.63 11.94 21.67 0.26 -52.37 16 9 Si 0.96 45.78 29.63 68.60 2.03 47.81 16 10 H -0.29 -14.73 7.11 99.48 0.71 -14.02 16 11 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 12 H -0.25 -10.73 7.11 99.48 0.71 -10.02 16 13 C 0.49 25.33 6.65 86.66 0.58 25.91 16 14 O -0.60 -37.20 14.50 -4.13 -0.06 -37.26 16 15 C -0.10 -4.11 5.62 -20.07 -0.11 -4.23 16 16 C -0.12 -3.48 7.51 22.53 0.17 -3.31 16 17 C -0.07 -1.44 9.95 22.34 0.22 -1.21 16 18 C 0.09 2.14 4.35 38.58 0.17 2.31 16 19 C 0.10 2.79 5.11 38.10 0.19 2.98 16 20 C -0.09 -3.40 9.51 22.62 0.22 -3.18 16 21 N -0.67 -18.10 3.48 -303.04 -1.06 -19.15 16 22 C 0.53 14.06 5.21 87.59 0.46 14.52 16 23 O -0.57 -18.47 17.95 -3.07 -0.06 -18.52 16 24 C -0.18 -3.47 5.41 29.68 0.16 -3.30 16 25 C 0.07 1.02 6.04 86.24 0.52 1.54 16 26 N -0.49 -9.18 4.84 -721.45 -3.49 -12.67 16 27 C -0.01 -0.25 8.81 127.69 1.12 0.88 16 28 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.08 1.07 7.84 -2.38 -0.02 1.05 16 30 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.06 1.76 7.23 -2.38 -0.02 1.74 16 32 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.06 2.15 8.11 -2.38 -0.02 2.13 16 34 H 0.11 3.45 3.81 -5.66 -0.02 3.43 16 35 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 36 H 0.18 4.61 2.26 -2.91 -0.01 4.60 16 37 H 0.18 2.42 8.06 -2.91 -0.02 2.39 16 38 H 0.10 4.40 7.91 -2.91 -0.02 4.38 16 39 H 0.41 10.75 8.95 -92.71 -0.83 9.92 16 40 H 0.12 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.09 1.94 7.32 -2.39 -0.02 1.93 16 42 H 0.10 1.21 7.69 -2.39 -0.02 1.20 16 43 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 44 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 45 H 0.09 1.40 7.80 -2.39 -0.02 1.38 16 46 H 0.05 1.08 3.60 -3.75 -0.01 1.07 16 Total: -1.00 -78.80 359.32 2.27 -76.52 By element: Atomic # 1 Polarization: 26.11 SS G_CDS: 0.18 Total: 26.30 kcal Atomic # 6 Polarization: 6.85 SS G_CDS: 6.10 Total: 12.96 kcal Atomic # 7 Polarization: -101.87 SS G_CDS: -5.93 Total: -107.80 kcal Atomic # 8 Polarization: -55.67 SS G_CDS: -0.12 Total: -55.78 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.81 kcal Total: -78.80 2.27 -76.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174728613.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.504 kcal (2) G-P(sol) polarization free energy of solvation -78.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds