Wall clock time and date at job start Tue Mar 31 2020 16:11:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50701 * 120.00365 * 2 1 4 4 N 1.46506 * 109.47198 * 124.99864 * 3 2 1 5 5 C 1.34773 * 119.99778 * 180.02562 * 4 3 2 6 6 O 1.21282 * 120.00561 * 0.02562 * 5 4 3 7 7 C 1.50707 * 119.99914 * 180.02562 * 5 4 3 8 8 N 1.46494 * 109.47011 * 180.02562 * 7 5 4 9 9 C 1.34784 * 119.99635 * 180.02562 * 8 7 5 10 10 O 1.21579 * 120.00114 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99908 * 179.97438 * 9 8 7 12 12 C 1.46496 * 120.00258 * 179.97438 * 11 9 8 13 13 H 1.09002 * 109.46776 * 35.00022 * 12 11 9 14 14 C 1.52998 * 109.47246 * 155.00083 * 12 11 9 15 15 C 1.50697 * 109.47439 * 295.00322 * 14 12 11 16 16 H 1.08007 * 119.99628 * 359.97438 * 15 14 12 17 17 C 1.37875 * 120.00471 * 180.02562 * 15 14 12 18 18 N 1.31519 * 119.99612 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 120.00481 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.47131 * 59.99588 * 19 17 15 21 21 H 1.48497 * 109.47491 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47167 * 299.99939 * 19 17 15 23 23 C 1.50696 * 109.47365 * 275.00798 * 12 11 9 24 24 C 1.38236 * 119.99802 * 319.72135 * 23 12 11 25 25 C 1.38242 * 120.00141 * 179.79215 * 24 23 12 26 26 C 1.38232 * 119.99627 * 0.44159 * 25 24 23 27 27 C 1.38232 * 119.99889 * 359.81024 * 26 25 24 28 28 C 1.38225 * 120.00662 * 359.97438 * 27 26 25 29 29 H 1.07997 * 120.00283 * 179.97438 * 1 2 3 30 30 H 1.08007 * 119.99890 * 359.97438 * 1 2 3 31 31 H 1.08000 * 120.00205 * 180.02562 * 2 1 3 32 32 H 1.09005 * 109.46911 * 5.00167 * 3 2 1 33 33 H 1.09002 * 109.47591 * 245.00127 * 3 2 1 34 34 H 0.97000 * 119.99666 * 0.02562 * 4 3 2 35 35 H 1.09005 * 109.46877 * 60.00048 * 7 5 4 36 36 H 1.09002 * 109.46993 * 300.00395 * 7 5 4 37 37 H 0.96995 * 120.00292 * 0.27660 * 8 7 5 38 38 H 0.96999 * 120.00047 * 0.02562 * 11 9 8 39 39 H 1.08998 * 109.47261 * 55.00563 * 14 12 11 40 40 H 1.09000 * 109.47285 * 175.00317 * 14 12 11 41 41 H 0.96995 * 119.99952 * 180.02562 * 18 17 15 42 42 H 1.08001 * 120.00085 * 359.97438 * 24 23 12 43 43 H 1.07997 * 119.99779 * 180.27319 * 25 24 23 44 44 H 1.07996 * 119.99638 * 179.83667 * 26 25 24 45 45 H 1.08007 * 119.99514 * 180.02562 * 27 26 25 46 46 H 1.08001 * 120.00946 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3318 1.1315 5 6 3.7783 2.4089 1.3335 6 8 3.7139 3.3562 0.5789 7 6 4.7357 2.4362 2.4971 8 7 5.4673 3.7054 2.4978 9 6 6.3846 3.9539 3.4535 10 8 6.6052 3.1246 4.3147 11 7 7.0580 5.1214 3.4539 12 6 8.0546 5.3918 4.4930 13 1 8.5649 4.4654 4.7568 14 6 9.0748 6.4049 3.9699 15 6 9.8457 5.7970 2.8266 16 1 9.6299 4.7887 2.5055 17 6 10.8273 6.5277 2.1912 18 7 11.0904 7.7554 2.5826 19 14 11.7823 5.7744 0.7736 20 1 10.8433 5.4099 -0.3176 21 1 12.7735 6.7572 0.2667 22 1 12.4900 4.5569 1.2450 23 6 7.3695 5.9526 5.7125 24 6 6.3435 6.8678 5.5692 25 6 5.7121 7.3791 6.6877 26 6 6.1129 6.9819 7.9496 27 6 7.1424 6.0707 8.0930 28 6 7.7708 5.5561 6.9745 29 1 -0.5400 -0.9353 -0.0004 30 1 -0.5400 0.9354 0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3586 2.1316 0.0896 33 1 2.6213 1.4026 -0.9314 34 1 3.0450 0.5743 1.7352 35 1 5.4409 1.6100 2.4068 36 1 4.1783 2.3380 3.4286 37 1 5.2889 4.3684 1.8126 38 1 6.8823 5.7829 2.7666 39 1 8.5551 7.2982 3.6234 40 1 9.7639 6.6733 4.7707 41 1 11.7806 8.2695 2.1354 42 1 6.0332 7.1813 4.5834 43 1 4.9075 8.0908 6.5756 44 1 5.6214 7.3833 8.8235 45 1 7.4552 5.7601 9.0790 46 1 8.5754 4.8444 7.0865 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000180838516.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:11:59 Heat of formation + Delta-G solvation = -25.519861 kcal Electronic energy + Delta-G solvation = -27338.354475 eV Core-core repulsion = 23421.250169 eV Total energy + Delta-G solvation = -3917.104307 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.27845 -39.50395 -38.47110 -36.26327 -35.29649 -34.02511 -33.21738 -32.67343 -31.05036 -30.40535 -28.92510 -28.10921 -25.73001 -24.61617 -22.24356 -21.90502 -21.14847 -20.76188 -20.34109 -19.75149 -18.41491 -17.13683 -16.68536 -16.48627 -16.17653 -16.10356 -15.64433 -15.28705 -14.80563 -14.58954 -14.48694 -14.37678 -14.02811 -13.71274 -13.38442 -13.17603 -13.10328 -12.94373 -12.72229 -12.48214 -12.28532 -12.06078 -11.64928 -11.49084 -11.09029 -10.87795 -10.67948 -10.59438 -10.46270 -10.40422 -9.98400 -9.73940 -9.71287 -9.43265 -9.26340 -8.96030 -8.48523 -8.41387 -8.26970 -8.12509 -6.04801 -4.07811 1.57208 1.83174 1.85950 2.32167 2.73347 3.32328 3.36388 3.36936 3.40139 3.70176 4.26274 4.27944 4.43749 4.47351 4.59781 4.82512 5.08293 5.28259 5.29606 5.31316 5.32080 5.32199 5.33378 5.36334 5.43157 5.60544 5.93122 5.96721 5.99565 6.02553 6.18803 6.20387 6.41228 6.48085 6.56909 6.65252 6.90047 6.90517 7.00387 7.11415 7.16005 7.36683 7.46228 7.55946 7.72343 7.85168 7.92245 8.30437 8.54299 8.97804 9.09963 9.56877 11.05740 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.008242 B = 0.003148 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3396.597296 B = 8891.770463 C =11622.070341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.177 4.177 3 C 0.146 3.854 4 N -0.727 5.727 5 C 0.510 3.490 6 O -0.533 6.533 7 C 0.125 3.875 8 N -0.743 5.743 9 C 0.707 3.293 10 O -0.600 6.600 11 N -0.713 5.713 12 C 0.202 3.798 13 H 0.087 0.913 14 C 0.023 3.977 15 C -0.519 4.519 16 H 0.058 0.942 17 C 0.060 3.940 18 N -0.893 5.893 19 Si 0.892 3.108 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.277 1.277 23 C -0.071 4.071 24 C -0.106 4.106 25 C -0.126 4.126 26 C -0.136 4.136 27 C -0.124 4.124 28 C -0.107 4.107 29 H 0.104 0.896 30 H 0.101 0.899 31 H 0.117 0.883 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.405 0.595 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.406 0.594 38 H 0.398 0.602 39 H 0.025 0.975 40 H 0.035 0.965 41 H 0.262 0.738 42 H 0.116 0.884 43 H 0.114 0.886 44 H 0.113 0.887 45 H 0.115 0.885 46 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.145 -11.182 0.832 22.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.196 4.196 3 C 0.023 3.977 4 N -0.380 5.380 5 C 0.296 3.704 6 O -0.409 6.409 7 C -0.004 4.004 8 N -0.403 5.403 9 C 0.407 3.593 10 O -0.479 6.479 11 N -0.365 5.365 12 C 0.098 3.902 13 H 0.105 0.895 14 C -0.014 4.014 15 C -0.557 4.557 16 H 0.076 0.924 17 C -0.142 4.142 18 N -0.532 5.532 19 Si 0.720 3.280 20 H -0.203 1.203 21 H -0.214 1.214 22 H -0.203 1.203 23 C -0.072 4.072 24 C -0.125 4.125 25 C -0.144 4.144 26 C -0.154 4.154 27 C -0.142 4.142 28 C -0.126 4.126 29 H 0.122 0.878 30 H 0.119 0.881 31 H 0.135 0.865 32 H 0.091 0.909 33 H 0.096 0.904 34 H 0.240 0.760 35 H 0.114 0.886 36 H 0.112 0.888 37 H 0.243 0.757 38 H 0.233 0.767 39 H 0.043 0.957 40 H 0.054 0.946 41 H 0.071 0.929 42 H 0.134 0.866 43 H 0.132 0.868 44 H 0.131 0.869 45 H 0.133 0.867 46 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -18.837 -11.075 1.020 21.876 hybrid contribution 0.381 -0.154 -1.217 1.285 sum -18.456 -11.229 -0.198 21.604 Atomic orbital electron populations 1.24000 0.95788 1.02503 0.97971 1.23008 0.96257 0.98109 1.02210 1.20431 0.91782 0.95667 0.89801 1.45866 1.41045 1.20020 1.31054 1.20747 0.80921 0.82348 0.86397 1.90720 1.67890 1.35232 1.47082 1.20735 0.94296 0.88783 0.96537 1.44729 1.43052 1.19600 1.32958 1.15866 0.78939 0.83063 0.81401 1.90868 1.69971 1.47248 1.39806 1.45105 1.41825 1.17357 1.32258 1.20129 0.87029 1.00355 0.82722 0.89491 1.19399 0.92353 0.92955 0.96677 1.21100 1.18524 1.00224 1.15836 0.92418 1.24985 0.97035 0.94842 0.97317 1.69949 1.32324 1.09389 1.41493 0.86651 0.79773 0.78921 0.82620 1.20271 1.21362 1.20253 1.20613 0.95412 0.95517 0.95701 1.20913 0.96312 0.96868 0.98370 1.21038 1.00173 1.00370 0.92833 1.20980 0.98365 0.99102 0.96952 1.21030 0.96936 0.97996 0.98227 1.21013 0.99826 0.99790 0.91965 0.87810 0.88118 0.86538 0.90903 0.90425 0.76043 0.88619 0.88753 0.75707 0.76747 0.95720 0.94645 0.92856 0.86594 0.86823 0.86924 0.86664 0.86169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.77 14.32 29.02 0.42 -0.35 16 2 C -0.18 -0.93 9.63 -36.02 -0.35 -1.27 16 3 C 0.15 1.07 6.11 -5.19 -0.03 1.04 16 4 N -0.73 -5.63 5.55 -61.46 -0.34 -5.97 16 5 C 0.51 5.69 7.90 -10.98 -0.09 5.60 16 6 O -0.53 -7.86 15.67 5.56 0.09 -7.77 16 7 C 0.13 1.46 6.15 -5.19 -0.03 1.43 16 8 N -0.74 -11.08 5.53 -66.41 -0.37 -11.45 16 9 C 0.71 13.07 8.52 -86.91 -0.74 12.33 16 10 O -0.60 -12.78 16.00 5.30 0.08 -12.70 16 11 N -0.71 -13.39 4.05 -59.82 -0.24 -13.63 16 12 C 0.20 4.21 2.11 -69.09 -0.15 4.07 16 13 H 0.09 1.97 7.44 -51.93 -0.39 1.59 16 14 C 0.02 0.57 4.49 -27.89 -0.13 0.45 16 15 C -0.52 -13.92 8.84 -34.44 -0.30 -14.23 16 16 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 17 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 18 N -0.89 -25.89 13.29 55.43 0.74 -25.16 16 19 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 C -0.07 -1.35 4.91 -104.62 -0.51 -1.86 16 24 C -0.11 -1.85 9.32 -39.58 -0.37 -2.22 16 25 C -0.13 -1.93 10.05 -39.58 -0.40 -2.33 16 26 C -0.14 -1.98 10.05 -39.59 -0.40 -2.38 16 27 C -0.12 -1.90 10.05 -39.59 -0.40 -2.30 16 28 C -0.11 -1.90 9.67 -39.59 -0.38 -2.29 16 29 H 0.10 0.36 8.06 -52.49 -0.42 -0.06 16 30 H 0.10 0.45 7.84 -52.48 -0.41 0.04 16 31 H 0.12 0.49 8.06 -52.49 -0.42 0.06 16 32 H 0.07 0.59 7.79 -51.93 -0.40 0.18 16 33 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.40 2.05 8.46 -40.82 -0.35 1.70 16 35 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.41 5.87 7.45 -40.82 -0.30 5.56 16 38 H 0.40 7.01 8.62 -40.82 -0.35 6.65 16 39 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 42 H 0.12 1.91 7.73 -52.49 -0.41 1.51 16 43 H 0.11 1.45 8.06 -52.49 -0.42 1.02 16 44 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16 45 H 0.12 1.45 8.06 -52.48 -0.42 1.03 16 46 H 0.12 2.03 8.04 -52.49 -0.42 1.61 16 LS Contribution 398.95 15.07 6.01 6.01 Total: -1.00 -34.04 398.95 -9.81 -43.85 By element: Atomic # 1 Polarization: 19.96 SS G_CDS: -6.80 Total: 13.16 kcal Atomic # 6 Polarization: 1.20 SS G_CDS: -3.95 Total: -2.75 kcal Atomic # 7 Polarization: -55.99 SS G_CDS: -0.21 Total: -56.21 kcal Atomic # 8 Polarization: -20.64 SS G_CDS: 0.17 Total: -20.47 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.04 -9.81 -43.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180838516.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.331 kcal (2) G-P(sol) polarization free energy of solvation -34.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds