Wall clock time and date at job start Tue Mar 31 2020 16:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50701 * 120.00365 * 2 1 4 4 N 1.46506 * 109.47198 * 124.99864 * 3 2 1 5 5 C 1.34773 * 119.99778 * 180.02562 * 4 3 2 6 6 O 1.21282 * 120.00561 * 0.02562 * 5 4 3 7 7 C 1.50707 * 119.99914 * 180.02562 * 5 4 3 8 8 N 1.46494 * 109.47011 * 180.02562 * 7 5 4 9 9 C 1.34784 * 119.99635 * 180.02562 * 8 7 5 10 10 O 1.21579 * 120.00114 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99908 * 179.97438 * 9 8 7 12 12 C 1.46496 * 120.00258 * 179.97438 * 11 9 8 13 13 H 1.09002 * 109.46776 * 35.00022 * 12 11 9 14 14 C 1.52998 * 109.47246 * 155.00083 * 12 11 9 15 15 C 1.50697 * 109.47439 * 295.00322 * 14 12 11 16 16 H 1.08007 * 119.99628 * 359.97438 * 15 14 12 17 17 C 1.37875 * 120.00471 * 180.02562 * 15 14 12 18 18 N 1.31519 * 119.99612 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 120.00481 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.47131 * 59.99588 * 19 17 15 21 21 H 1.48497 * 109.47491 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47167 * 299.99939 * 19 17 15 23 23 C 1.50696 * 109.47365 * 275.00798 * 12 11 9 24 24 C 1.38236 * 119.99802 * 319.72135 * 23 12 11 25 25 C 1.38242 * 120.00141 * 179.79215 * 24 23 12 26 26 C 1.38232 * 119.99627 * 0.44159 * 25 24 23 27 27 C 1.38232 * 119.99889 * 359.81024 * 26 25 24 28 28 C 1.38225 * 120.00662 * 359.97438 * 27 26 25 29 29 H 1.07997 * 120.00283 * 179.97438 * 1 2 3 30 30 H 1.08007 * 119.99890 * 359.97438 * 1 2 3 31 31 H 1.08000 * 120.00205 * 180.02562 * 2 1 3 32 32 H 1.09005 * 109.46911 * 5.00167 * 3 2 1 33 33 H 1.09002 * 109.47591 * 245.00127 * 3 2 1 34 34 H 0.97000 * 119.99666 * 0.02562 * 4 3 2 35 35 H 1.09005 * 109.46877 * 60.00048 * 7 5 4 36 36 H 1.09002 * 109.46993 * 300.00395 * 7 5 4 37 37 H 0.96995 * 120.00292 * 0.27660 * 8 7 5 38 38 H 0.96999 * 120.00047 * 0.02562 * 11 9 8 39 39 H 1.08998 * 109.47261 * 55.00563 * 14 12 11 40 40 H 1.09000 * 109.47285 * 175.00317 * 14 12 11 41 41 H 0.96995 * 119.99952 * 180.02562 * 18 17 15 42 42 H 1.08001 * 120.00085 * 359.97438 * 24 23 12 43 43 H 1.07997 * 119.99779 * 180.27319 * 25 24 23 44 44 H 1.07996 * 119.99638 * 179.83667 * 26 25 24 45 45 H 1.08007 * 119.99514 * 180.02562 * 27 26 25 46 46 H 1.08001 * 120.00946 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3318 1.1315 5 6 3.7783 2.4089 1.3335 6 8 3.7139 3.3562 0.5789 7 6 4.7357 2.4362 2.4971 8 7 5.4673 3.7054 2.4978 9 6 6.3846 3.9539 3.4535 10 8 6.6052 3.1246 4.3147 11 7 7.0580 5.1214 3.4539 12 6 8.0546 5.3918 4.4930 13 1 8.5649 4.4654 4.7568 14 6 9.0748 6.4049 3.9699 15 6 9.8457 5.7970 2.8266 16 1 9.6299 4.7887 2.5055 17 6 10.8273 6.5277 2.1912 18 7 11.0904 7.7554 2.5826 19 14 11.7823 5.7744 0.7736 20 1 10.8433 5.4099 -0.3176 21 1 12.7735 6.7572 0.2667 22 1 12.4900 4.5569 1.2450 23 6 7.3695 5.9526 5.7125 24 6 6.3435 6.8678 5.5692 25 6 5.7121 7.3791 6.6877 26 6 6.1129 6.9819 7.9496 27 6 7.1424 6.0707 8.0930 28 6 7.7708 5.5561 6.9745 29 1 -0.5400 -0.9353 -0.0004 30 1 -0.5400 0.9354 0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3586 2.1316 0.0896 33 1 2.6213 1.4026 -0.9314 34 1 3.0450 0.5743 1.7352 35 1 5.4409 1.6100 2.4068 36 1 4.1783 2.3380 3.4286 37 1 5.2889 4.3684 1.8126 38 1 6.8823 5.7829 2.7666 39 1 8.5551 7.2982 3.6234 40 1 9.7639 6.6733 4.7707 41 1 11.7806 8.2695 2.1354 42 1 6.0332 7.1813 4.5834 43 1 4.9075 8.0908 6.5756 44 1 5.6214 7.3833 8.8235 45 1 7.4552 5.7601 9.0790 46 1 8.5754 4.8444 7.0865 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000180838516.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:11:58 Heat of formation + Delta-G solvation = -48.810467 kcal Electronic energy + Delta-G solvation = -27339.364432 eV Core-core repulsion = 23421.250169 eV Total energy + Delta-G solvation = -3918.114263 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.45362 -40.71696 -39.77080 -37.04702 -36.77475 -35.35751 -34.70471 -33.83713 -32.46279 -31.66585 -30.55410 -29.22769 -26.84981 -26.07224 -23.77380 -23.35861 -22.25662 -21.79915 -21.28721 -20.92310 -19.66175 -18.66524 -17.98229 -17.54777 -17.51157 -17.15488 -16.84390 -16.48340 -16.36962 -15.92553 -15.75516 -15.55028 -15.12507 -14.88195 -14.50152 -14.43336 -14.16003 -14.11723 -14.08906 -13.72880 -13.63513 -13.40562 -13.26172 -12.90124 -12.63189 -12.44245 -12.13377 -12.06349 -11.84943 -11.56675 -11.34419 -11.30606 -11.27542 -10.58838 -10.57263 -10.35206 -10.10899 -9.77047 -9.70559 -9.48759 -8.19054 -6.28699 0.53712 0.58996 1.12142 1.40264 1.41362 1.42308 1.49476 1.67280 2.22197 2.36958 2.40640 2.98261 3.14244 3.41652 3.66350 3.85828 4.02855 4.06799 4.15214 4.23723 4.34350 4.35119 4.36190 4.47545 4.55957 4.68280 4.73353 4.78457 4.82083 4.99670 5.15672 5.22754 5.25190 5.30219 5.37318 5.45391 5.64023 5.64819 5.64945 5.67025 5.76567 5.79630 5.87404 6.09394 6.18565 6.23273 6.39176 6.83577 7.04810 7.12195 7.39798 7.62945 8.91458 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.008242 B = 0.003148 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3396.597296 B = 8891.770463 C =11622.070341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.183 4.183 3 C 0.145 3.855 4 N -0.708 5.708 5 C 0.514 3.486 6 O -0.573 6.573 7 C 0.123 3.877 8 N -0.734 5.734 9 C 0.708 3.292 10 O -0.629 6.629 11 N -0.713 5.713 12 C 0.220 3.780 13 H 0.061 0.939 14 C 0.037 3.963 15 C -0.528 4.528 16 H 0.053 0.947 17 C 0.010 3.990 18 N -0.926 5.926 19 Si 0.956 3.044 20 H -0.270 1.270 21 H -0.283 1.283 22 H -0.273 1.273 23 C -0.098 4.098 24 C -0.121 4.121 25 C -0.127 4.127 26 C -0.129 4.129 27 C -0.123 4.123 28 C -0.130 4.130 29 H 0.120 0.880 30 H 0.099 0.901 31 H 0.131 0.869 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.420 0.580 35 H 0.105 0.895 36 H 0.109 0.891 37 H 0.409 0.591 38 H 0.403 0.597 39 H 0.010 0.990 40 H 0.007 0.993 41 H 0.264 0.736 42 H 0.116 0.884 43 H 0.144 0.856 44 H 0.151 0.849 45 H 0.145 0.855 46 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.975 -12.193 1.285 24.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.201 4.201 3 C 0.022 3.978 4 N -0.361 5.361 5 C 0.301 3.699 6 O -0.452 6.452 7 C -0.005 4.005 8 N -0.393 5.393 9 C 0.407 3.593 10 O -0.511 6.511 11 N -0.365 5.365 12 C 0.114 3.886 13 H 0.079 0.921 14 C 0.000 4.000 15 C -0.566 4.566 16 H 0.071 0.929 17 C -0.189 4.189 18 N -0.566 5.566 19 Si 0.781 3.219 20 H -0.195 1.195 21 H -0.208 1.208 22 H -0.199 1.199 23 C -0.099 4.099 24 C -0.140 4.140 25 C -0.144 4.144 26 C -0.147 4.147 27 C -0.141 4.141 28 C -0.149 4.149 29 H 0.138 0.862 30 H 0.118 0.882 31 H 0.149 0.851 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.258 0.742 35 H 0.123 0.877 36 H 0.127 0.873 37 H 0.246 0.754 38 H 0.238 0.762 39 H 0.029 0.971 40 H 0.026 0.974 41 H 0.072 0.928 42 H 0.134 0.866 43 H 0.161 0.839 44 H 0.169 0.831 45 H 0.163 0.837 46 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -20.713 -12.138 1.460 24.052 hybrid contribution 0.853 0.140 -1.303 1.564 sum -19.860 -11.998 0.156 23.203 Atomic orbital electron populations 1.24184 0.95668 1.03281 0.96535 1.22941 0.96373 0.97365 1.03408 1.20475 0.91466 0.96862 0.89002 1.45757 1.39789 1.19403 1.31119 1.20609 0.81009 0.82587 0.85725 1.90708 1.69265 1.36884 1.48387 1.20942 0.94559 0.87421 0.97584 1.44668 1.42108 1.20776 1.31764 1.15901 0.79273 0.82410 0.81680 1.90839 1.71051 1.48024 1.41162 1.44948 1.41577 1.17886 1.32099 1.19604 0.86972 0.97960 0.84071 0.92069 1.19140 0.92473 0.93269 0.95123 1.21368 1.18819 0.99999 1.16391 0.92895 1.25777 0.98038 0.95233 0.99835 1.70063 1.33044 1.10636 1.42826 0.85642 0.78482 0.78127 0.79615 1.19473 1.20828 1.19874 1.20492 0.96908 0.97319 0.95222 1.21045 0.96388 0.97038 0.99504 1.21418 1.00349 1.00247 0.92428 1.21456 0.97456 0.97815 0.97969 1.21390 0.96572 0.97504 0.98637 1.21179 1.00525 1.00618 0.92565 0.86198 0.88231 0.85149 0.91690 0.91440 0.74232 0.87687 0.87326 0.75359 0.76238 0.97143 0.97437 0.92755 0.86587 0.83862 0.83127 0.83707 0.86668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.16 14.32 67.79 0.97 -0.19 16 2 C -0.18 -1.57 9.63 25.65 0.25 -1.32 16 3 C 0.14 1.99 6.11 85.63 0.52 2.52 16 4 N -0.71 -10.02 5.55 -466.76 -2.59 -12.61 16 5 C 0.51 11.11 7.90 87.66 0.69 11.81 16 6 O -0.57 -16.88 15.67 -3.03 -0.05 -16.92 16 7 C 0.12 2.77 6.15 85.64 0.53 3.29 16 8 N -0.73 -21.90 5.53 -482.29 -2.67 -24.57 16 9 C 0.71 26.60 8.52 179.05 1.53 28.12 16 10 O -0.63 -27.25 16.00 -3.96 -0.06 -27.32 16 11 N -0.71 -27.73 4.05 -461.43 -1.87 -29.60 16 12 C 0.22 9.60 2.11 44.24 0.09 9.69 16 13 H 0.06 2.95 7.44 -2.39 -0.02 2.93 16 14 C 0.04 1.92 4.49 29.85 0.13 2.05 16 15 C -0.53 -29.23 8.84 25.60 0.23 -29.00 16 16 H 0.05 2.93 7.74 -2.91 -0.02 2.91 16 17 C 0.01 0.55 5.46 84.65 0.46 1.01 16 18 N -0.93 -54.90 13.29 21.45 0.28 -54.61 16 19 Si 0.96 44.40 29.54 68.60 2.03 46.43 16 20 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 21 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 22 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 23 C -0.10 -3.84 4.91 -19.87 -0.10 -3.94 16 24 C -0.12 -4.22 9.32 22.27 0.21 -4.01 16 25 C -0.13 -3.61 10.05 22.27 0.22 -3.38 16 26 C -0.13 -3.37 10.05 22.27 0.22 -3.15 16 27 C -0.12 -3.56 10.05 22.27 0.22 -3.34 16 28 C -0.13 -4.69 9.67 22.27 0.22 -4.47 16 29 H 0.12 0.51 8.06 -2.91 -0.02 0.49 16 30 H 0.10 0.75 7.84 -2.91 -0.02 0.72 16 31 H 0.13 0.77 8.06 -2.91 -0.02 0.75 16 32 H 0.06 1.01 7.79 -2.38 -0.02 0.99 16 33 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.42 3.40 8.46 -92.71 -0.78 2.61 16 35 H 0.11 2.22 8.14 -2.38 -0.02 2.20 16 36 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 37 H 0.41 11.91 7.45 -92.71 -0.69 11.22 16 38 H 0.40 14.73 8.62 -92.71 -0.80 13.93 16 39 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 40 H 0.01 0.41 8.14 -2.39 -0.02 0.40 16 41 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 42 H 0.12 3.89 7.73 -2.91 -0.02 3.87 16 43 H 0.14 3.18 8.06 -2.91 -0.02 3.15 16 44 H 0.15 2.80 8.06 -2.91 -0.02 2.77 16 45 H 0.15 3.24 8.06 -2.91 -0.02 3.22 16 46 H 0.12 4.09 8.04 -2.91 -0.02 4.07 16 Total: -1.00 -74.98 398.95 0.21 -74.77 By element: Atomic # 1 Polarization: 40.00 SS G_CDS: -1.27 Total: 38.74 kcal Atomic # 6 Polarization: -0.70 SS G_CDS: 6.40 Total: 5.69 kcal Atomic # 7 Polarization: -114.55 SS G_CDS: -6.84 Total: -121.39 kcal Atomic # 8 Polarization: -44.13 SS G_CDS: -0.11 Total: -44.24 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -74.98 0.21 -74.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180838516.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.958 kcal (2) G-P(sol) polarization free energy of solvation -74.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds