Wall clock time and date at job start Tue Mar 31 2020 16:12:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50706 * 120.00120 * 2 1 4 4 N 1.46495 * 109.47402 * 124.99995 * 3 2 1 5 5 C 1.34776 * 120.00146 * 179.97438 * 4 3 2 6 6 O 1.21285 * 119.99730 * 0.02562 * 5 4 3 7 7 C 1.50697 * 119.99984 * 179.97438 * 5 4 3 8 8 N 1.46507 * 109.46680 * 180.02562 * 7 5 4 9 9 C 1.34775 * 119.99725 * 180.02562 * 8 7 5 10 10 O 1.21596 * 120.00015 * 359.97438 * 9 8 7 11 11 N 1.34771 * 120.00181 * 179.97438 * 9 8 7 12 12 C 1.46500 * 120.00556 * 179.97438 * 11 9 8 13 13 H 1.09009 * 109.46624 * 324.99750 * 12 11 9 14 14 C 1.52996 * 109.47466 * 205.00158 * 12 11 9 15 15 C 1.50702 * 109.47159 * 64.99479 * 14 12 11 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 12 17 17 C 1.37884 * 119.99942 * 179.72211 * 15 14 12 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 14 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 14 20 20 H 1.48504 * 109.47196 * 60.00645 * 19 17 15 21 21 H 1.48504 * 109.46887 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47679 * 300.00280 * 19 17 15 23 23 C 1.50700 * 109.47471 * 84.99708 * 12 11 9 24 24 C 1.38233 * 119.99377 * 39.72808 * 23 12 11 25 25 C 1.38237 * 119.99600 * 179.78842 * 24 23 12 26 26 C 1.38241 * 119.99990 * 0.44354 * 25 24 23 27 27 C 1.38237 * 119.99716 * 359.81238 * 26 25 24 28 28 C 1.38228 * 120.00326 * 220.00479 * 23 12 11 29 29 H 1.08006 * 120.00156 * 0.02562 * 1 2 3 30 30 H 1.08000 * 119.99937 * 180.02562 * 1 2 3 31 31 H 1.08006 * 120.00156 * 179.97438 * 2 1 3 32 32 H 1.08995 * 109.46881 * 4.99610 * 3 2 1 33 33 H 1.09001 * 109.46511 * 244.99961 * 3 2 1 34 34 H 0.97003 * 120.00030 * 359.97438 * 4 3 2 35 35 H 1.08995 * 109.47274 * 60.00629 * 7 5 4 36 36 H 1.09001 * 109.47565 * 300.00094 * 7 5 4 37 37 H 0.96998 * 120.00038 * 0.02562 * 8 7 5 38 38 H 0.97002 * 120.00072 * 359.97438 * 11 9 8 39 39 H 1.09004 * 109.47066 * 304.99682 * 14 12 11 40 40 H 1.08994 * 109.47405 * 184.99512 * 14 12 11 41 41 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 42 42 H 1.07995 * 120.00514 * 359.97438 * 24 23 12 43 43 H 1.08001 * 120.00058 * 180.28006 * 25 24 23 44 44 H 1.07995 * 120.00194 * 179.83256 * 26 25 24 45 45 H 1.08001 * 119.99824 * 180.02562 * 27 26 25 46 46 H 1.08005 * 119.99906 * 359.97438 * 28 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3320 1.1314 5 6 3.7790 2.4087 1.3328 6 8 3.7151 3.3556 0.5776 7 6 4.7355 2.4365 2.4969 8 7 5.4681 3.7052 2.4968 9 6 6.3848 3.9541 3.4528 10 8 6.6036 3.1258 4.3157 11 7 7.0592 5.1210 3.4524 12 6 8.0553 5.3918 4.4919 13 1 7.7282 4.9490 5.4327 14 6 8.2116 6.9037 4.6671 15 6 6.9227 7.4849 5.1888 16 1 6.0768 6.8403 5.3771 17 6 6.8254 8.8386 5.4318 18 7 7.8556 9.6234 5.2029 19 14 5.2303 9.5578 6.0857 20 1 4.9059 8.9344 7.3940 21 1 5.3836 11.0246 6.2603 22 1 4.1332 9.2864 5.1224 23 6 9.3782 4.7935 4.0882 24 6 9.7950 4.8627 2.7720 25 6 11.0105 4.3177 2.4024 26 6 11.8049 3.6955 3.3473 27 6 11.3855 3.6217 4.6624 28 6 10.1721 4.1705 5.0328 29 1 -0.5401 0.9353 -0.0004 30 1 -0.5400 -0.9353 0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3586 2.1316 0.0895 33 1 2.6212 1.4025 -0.9314 34 1 3.0445 0.5748 1.7356 35 1 5.4401 1.6097 2.4081 36 1 4.1774 2.3397 3.4282 37 1 5.2933 4.3661 1.8086 38 1 6.8849 5.7816 2.7638 39 1 8.4521 7.3579 3.7058 40 1 9.0146 7.1063 5.3757 41 1 7.7870 10.5759 5.3735 42 1 9.1725 5.3451 2.0330 43 1 11.3382 4.3757 1.3750 44 1 12.7532 3.2673 3.0581 45 1 12.0064 3.1360 5.4007 46 1 9.8446 4.1129 6.0603 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000180838534.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:12:01 Heat of formation + Delta-G solvation = -25.493232 kcal Electronic energy + Delta-G solvation = -27337.133545 eV Core-core repulsion = 23420.030393 eV Total energy + Delta-G solvation = -3917.103152 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.27787 -39.50368 -38.46918 -36.26117 -35.29547 -34.02330 -33.21463 -32.67382 -31.04922 -30.40455 -28.92670 -28.10976 -25.72900 -24.61622 -22.24073 -21.90666 -21.14718 -20.76045 -20.33924 -19.75095 -18.41427 -17.13049 -16.70325 -16.49144 -16.12899 -16.09267 -15.73798 -15.17456 -14.89718 -14.58487 -14.47584 -14.32991 -14.05890 -13.70515 -13.39073 -13.17720 -13.08191 -12.94304 -12.73363 -12.48118 -12.28481 -12.06034 -11.64500 -11.49170 -11.08982 -10.87796 -10.67795 -10.59270 -10.46097 -10.40616 -9.98188 -9.73708 -9.71289 -9.43212 -9.26347 -8.96039 -8.48534 -8.41405 -8.27135 -8.12385 -6.04859 -4.07853 1.57606 1.83248 1.85991 2.32203 2.73366 3.32315 3.36376 3.36894 3.40124 3.70126 4.26321 4.28226 4.43739 4.47347 4.60110 4.82433 5.08621 5.28250 5.29807 5.31113 5.31881 5.32429 5.33475 5.36858 5.43145 5.60575 5.93422 5.96799 5.99556 6.02937 6.19089 6.20513 6.41211 6.48092 6.56842 6.65220 6.90091 6.90558 7.00291 7.11421 7.16092 7.36675 7.46264 7.55965 7.72360 7.85195 7.92196 8.30391 8.54281 8.97770 9.09931 9.56828 11.05678 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.008135 B = 0.003168 C = 0.002410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3440.918254 B = 8837.227419 C =11616.147328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.178 4.178 3 C 0.146 3.854 4 N -0.727 5.727 5 C 0.510 3.490 6 O -0.533 6.533 7 C 0.125 3.875 8 N -0.743 5.743 9 C 0.707 3.293 10 O -0.600 6.600 11 N -0.713 5.713 12 C 0.202 3.798 13 H 0.087 0.913 14 C 0.023 3.977 15 C -0.519 4.519 16 H 0.058 0.942 17 C 0.060 3.940 18 N -0.893 5.893 19 Si 0.892 3.108 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.277 1.277 23 C -0.071 4.071 24 C -0.106 4.106 25 C -0.126 4.126 26 C -0.136 4.136 27 C -0.124 4.124 28 C -0.107 4.107 29 H 0.101 0.899 30 H 0.104 0.896 31 H 0.116 0.884 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.405 0.595 35 H 0.095 0.905 36 H 0.096 0.904 37 H 0.406 0.594 38 H 0.398 0.602 39 H 0.025 0.975 40 H 0.035 0.965 41 H 0.262 0.738 42 H 0.116 0.884 43 H 0.114 0.886 44 H 0.113 0.887 45 H 0.115 0.885 46 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.119 -18.713 -9.713 21.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.197 4.197 3 C 0.023 3.977 4 N -0.380 5.380 5 C 0.296 3.704 6 O -0.409 6.409 7 C -0.004 4.004 8 N -0.403 5.403 9 C 0.407 3.593 10 O -0.479 6.479 11 N -0.365 5.365 12 C 0.098 3.902 13 H 0.105 0.895 14 C -0.014 4.014 15 C -0.557 4.557 16 H 0.076 0.924 17 C -0.142 4.142 18 N -0.532 5.532 19 Si 0.720 3.280 20 H -0.202 1.202 21 H -0.214 1.214 22 H -0.203 1.203 23 C -0.072 4.072 24 C -0.125 4.125 25 C -0.144 4.144 26 C -0.154 4.154 27 C -0.142 4.142 28 C -0.126 4.126 29 H 0.119 0.881 30 H 0.122 0.878 31 H 0.134 0.866 32 H 0.091 0.909 33 H 0.095 0.905 34 H 0.240 0.760 35 H 0.113 0.887 36 H 0.114 0.886 37 H 0.243 0.757 38 H 0.233 0.767 39 H 0.043 0.957 40 H 0.054 0.946 41 H 0.071 0.929 42 H 0.134 0.866 43 H 0.132 0.868 44 H 0.131 0.869 45 H 0.133 0.867 46 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -5.900 -18.555 -9.453 21.644 hybrid contribution -1.041 0.667 -0.057 1.238 sum -6.941 -17.888 -9.510 21.415 Atomic orbital electron populations 1.24009 0.95802 1.02533 0.97844 1.23002 0.96258 0.98073 1.02327 1.20427 0.91800 0.95708 0.89735 1.45866 1.41003 1.20068 1.31046 1.20747 0.80974 0.82308 0.86387 1.90721 1.67960 1.35155 1.47090 1.20735 0.94292 0.88646 0.96678 1.44730 1.43049 1.19744 1.32810 1.15868 0.78875 0.83062 0.81470 1.90873 1.70282 1.47338 1.39416 1.45105 1.41749 1.16952 1.32738 1.20133 0.81716 0.98941 0.89447 0.89493 1.19398 0.98098 0.85702 0.98185 1.21105 0.98087 0.92600 1.43914 0.92415 1.24986 0.96370 0.97260 0.95553 1.69952 1.29863 1.04789 1.48547 0.86652 0.83880 0.77844 0.79594 1.20242 1.21359 1.20276 1.20608 0.97225 0.95851 0.93545 1.20909 0.96040 0.99485 0.96034 1.21039 0.95057 0.99308 0.99001 1.20983 0.99629 1.01141 0.93654 1.21031 0.96561 1.00513 0.96078 1.21010 0.94480 0.97584 0.99524 0.88087 0.87806 0.86561 0.90872 0.90473 0.76045 0.88725 0.88640 0.75704 0.76742 0.95721 0.94640 0.92857 0.86597 0.86824 0.86925 0.86665 0.86171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.79 14.32 29.02 0.42 -0.37 16 2 C -0.18 -0.93 9.63 -36.02 -0.35 -1.28 16 3 C 0.15 1.08 6.11 -5.19 -0.03 1.04 16 4 N -0.73 -5.63 5.55 -61.47 -0.34 -5.97 16 5 C 0.51 5.69 7.90 -10.99 -0.09 5.60 16 6 O -0.53 -7.86 15.67 5.55 0.09 -7.77 16 7 C 0.13 1.46 6.15 -5.19 -0.03 1.43 16 8 N -0.74 -11.08 5.53 -66.41 -0.37 -11.45 16 9 C 0.71 13.07 8.52 -86.92 -0.74 12.33 16 10 O -0.60 -12.78 16.01 5.28 0.08 -12.70 16 11 N -0.71 -13.39 4.02 -59.81 -0.24 -13.63 16 12 C 0.20 4.21 2.12 -69.08 -0.15 4.07 16 13 H 0.09 1.97 7.44 -51.92 -0.39 1.59 16 14 C 0.02 0.57 4.50 -27.88 -0.13 0.45 16 15 C -0.52 -13.93 8.84 -34.44 -0.30 -14.24 16 16 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 17 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 18 N -0.89 -25.90 13.29 55.43 0.74 -25.16 16 19 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 C -0.07 -1.35 4.91 -104.63 -0.51 -1.86 16 24 C -0.11 -1.85 9.33 -39.58 -0.37 -2.22 16 25 C -0.13 -1.93 10.05 -39.58 -0.40 -2.33 16 26 C -0.14 -1.98 10.05 -39.58 -0.40 -2.38 16 27 C -0.12 -1.90 10.05 -39.59 -0.40 -2.30 16 28 C -0.11 -1.90 9.67 -39.59 -0.38 -2.29 16 29 H 0.10 0.48 7.84 -52.48 -0.41 0.07 16 30 H 0.10 0.37 8.06 -52.49 -0.42 -0.05 16 31 H 0.12 0.47 8.06 -52.48 -0.42 0.05 16 32 H 0.07 0.61 7.79 -51.93 -0.40 0.20 16 33 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.40 2.05 8.46 -40.82 -0.35 1.70 16 35 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 36 H 0.10 1.07 8.14 -51.93 -0.42 0.64 16 37 H 0.41 5.87 7.45 -40.82 -0.30 5.56 16 38 H 0.40 7.01 8.62 -40.82 -0.35 6.65 16 39 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 42 H 0.12 1.91 7.71 -52.49 -0.40 1.51 16 43 H 0.11 1.45 8.06 -52.49 -0.42 1.02 16 44 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16 45 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 46 H 0.12 2.03 8.04 -52.48 -0.42 1.61 16 LS Contribution 398.92 15.07 6.01 6.01 Total: -1.00 -34.05 398.92 -9.81 -43.86 By element: Atomic # 1 Polarization: 19.99 SS G_CDS: -6.80 Total: 13.19 kcal Atomic # 6 Polarization: 1.18 SS G_CDS: -3.96 Total: -2.78 kcal Atomic # 7 Polarization: -56.00 SS G_CDS: -0.21 Total: -56.21 kcal Atomic # 8 Polarization: -20.64 SS G_CDS: 0.17 Total: -20.47 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.05 -9.81 -43.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180838534.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.364 kcal (2) G-P(sol) polarization free energy of solvation -34.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds