Wall clock time and date at job start Tue Mar 31 2020 16:12:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50706 * 120.00120 * 2 1 4 4 N 1.46495 * 109.47402 * 124.99995 * 3 2 1 5 5 C 1.34776 * 120.00146 * 179.97438 * 4 3 2 6 6 O 1.21285 * 119.99730 * 0.02562 * 5 4 3 7 7 C 1.50697 * 119.99984 * 179.97438 * 5 4 3 8 8 N 1.46507 * 109.46680 * 180.02562 * 7 5 4 9 9 C 1.34775 * 119.99725 * 180.02562 * 8 7 5 10 10 O 1.21596 * 120.00015 * 359.97438 * 9 8 7 11 11 N 1.34771 * 120.00181 * 179.97438 * 9 8 7 12 12 C 1.46500 * 120.00556 * 179.97438 * 11 9 8 13 13 H 1.09009 * 109.46624 * 324.99750 * 12 11 9 14 14 C 1.52996 * 109.47466 * 205.00158 * 12 11 9 15 15 C 1.50702 * 109.47159 * 64.99479 * 14 12 11 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 12 17 17 C 1.37884 * 119.99942 * 179.72211 * 15 14 12 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 14 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 14 20 20 H 1.48504 * 109.47196 * 60.00645 * 19 17 15 21 21 H 1.48504 * 109.46887 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47679 * 300.00280 * 19 17 15 23 23 C 1.50700 * 109.47471 * 84.99708 * 12 11 9 24 24 C 1.38233 * 119.99377 * 39.72808 * 23 12 11 25 25 C 1.38237 * 119.99600 * 179.78842 * 24 23 12 26 26 C 1.38241 * 119.99990 * 0.44354 * 25 24 23 27 27 C 1.38237 * 119.99716 * 359.81238 * 26 25 24 28 28 C 1.38228 * 120.00326 * 220.00479 * 23 12 11 29 29 H 1.08006 * 120.00156 * 0.02562 * 1 2 3 30 30 H 1.08000 * 119.99937 * 180.02562 * 1 2 3 31 31 H 1.08006 * 120.00156 * 179.97438 * 2 1 3 32 32 H 1.08995 * 109.46881 * 4.99610 * 3 2 1 33 33 H 1.09001 * 109.46511 * 244.99961 * 3 2 1 34 34 H 0.97003 * 120.00030 * 359.97438 * 4 3 2 35 35 H 1.08995 * 109.47274 * 60.00629 * 7 5 4 36 36 H 1.09001 * 109.47565 * 300.00094 * 7 5 4 37 37 H 0.96998 * 120.00038 * 0.02562 * 8 7 5 38 38 H 0.97002 * 120.00072 * 359.97438 * 11 9 8 39 39 H 1.09004 * 109.47066 * 304.99682 * 14 12 11 40 40 H 1.08994 * 109.47405 * 184.99512 * 14 12 11 41 41 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 42 42 H 1.07995 * 120.00514 * 359.97438 * 24 23 12 43 43 H 1.08001 * 120.00058 * 180.28006 * 25 24 23 44 44 H 1.07995 * 120.00194 * 179.83256 * 26 25 24 45 45 H 1.08001 * 119.99824 * 180.02562 * 27 26 25 46 46 H 1.08005 * 119.99906 * 359.97438 * 28 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3320 1.1314 5 6 3.7790 2.4087 1.3328 6 8 3.7151 3.3556 0.5776 7 6 4.7355 2.4365 2.4969 8 7 5.4681 3.7052 2.4968 9 6 6.3848 3.9541 3.4528 10 8 6.6036 3.1258 4.3157 11 7 7.0592 5.1210 3.4524 12 6 8.0553 5.3918 4.4919 13 1 7.7282 4.9490 5.4327 14 6 8.2116 6.9037 4.6671 15 6 6.9227 7.4849 5.1888 16 1 6.0768 6.8403 5.3771 17 6 6.8254 8.8386 5.4318 18 7 7.8556 9.6234 5.2029 19 14 5.2303 9.5578 6.0857 20 1 4.9059 8.9344 7.3940 21 1 5.3836 11.0246 6.2603 22 1 4.1332 9.2864 5.1224 23 6 9.3782 4.7935 4.0882 24 6 9.7950 4.8627 2.7720 25 6 11.0105 4.3177 2.4024 26 6 11.8049 3.6955 3.3473 27 6 11.3855 3.6217 4.6624 28 6 10.1721 4.1705 5.0328 29 1 -0.5401 0.9353 -0.0004 30 1 -0.5400 -0.9353 0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3586 2.1316 0.0895 33 1 2.6212 1.4025 -0.9314 34 1 3.0445 0.5748 1.7356 35 1 5.4401 1.6097 2.4081 36 1 4.1774 2.3397 3.4282 37 1 5.2933 4.3661 1.8086 38 1 6.8849 5.7816 2.7638 39 1 8.4521 7.3579 3.7058 40 1 9.0146 7.1063 5.3757 41 1 7.7870 10.5759 5.3735 42 1 9.1725 5.3451 2.0330 43 1 11.3382 4.3757 1.3750 44 1 12.7532 3.2673 3.0581 45 1 12.0064 3.1360 5.4007 46 1 9.8446 4.1129 6.0603 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000180838534.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:12:01 Heat of formation + Delta-G solvation = -48.785989 kcal Electronic energy + Delta-G solvation = -27338.143595 eV Core-core repulsion = 23420.030393 eV Total energy + Delta-G solvation = -3918.113202 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.45293 -40.71675 -39.76858 -37.04685 -36.77404 -35.35580 -34.70541 -33.83740 -32.46156 -31.66456 -30.55611 -29.22911 -26.85037 -26.07343 -23.77105 -23.35939 -22.25588 -21.79911 -21.28693 -20.92403 -19.66147 -18.66461 -17.98295 -17.56657 -17.50906 -17.05626 -16.96407 -16.48278 -16.26313 -16.04595 -15.73314 -15.49196 -15.15578 -14.87669 -14.55500 -14.33257 -14.20483 -14.15957 -14.05079 -13.72722 -13.63818 -13.40647 -13.26141 -12.90102 -12.63229 -12.44124 -12.13330 -12.06511 -11.84832 -11.56701 -11.34364 -11.30540 -11.27508 -10.58808 -10.57463 -10.35191 -10.10984 -9.77106 -9.70550 -9.48593 -8.19163 -6.28799 0.53830 0.59086 1.11894 1.40257 1.41322 1.42421 1.49461 1.67178 2.22203 2.36929 2.40603 2.98356 3.14188 3.41599 3.66355 3.85625 4.02915 4.06882 4.15362 4.23787 4.34429 4.35169 4.36277 4.47584 4.55647 4.68195 4.73404 4.78545 4.82151 4.99376 5.15739 5.22831 5.25288 5.30195 5.37264 5.45328 5.64101 5.64529 5.64881 5.67073 5.76608 5.79575 5.87462 6.09394 6.18573 6.23277 6.39157 6.83508 7.04838 7.12198 7.39716 7.62935 8.91368 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.008135 B = 0.003168 C = 0.002410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3440.918254 B = 8837.227419 C =11616.147328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.181 4.181 3 C 0.145 3.855 4 N -0.708 5.708 5 C 0.514 3.486 6 O -0.573 6.573 7 C 0.123 3.877 8 N -0.734 5.734 9 C 0.708 3.292 10 O -0.629 6.629 11 N -0.713 5.713 12 C 0.220 3.780 13 H 0.061 0.939 14 C 0.037 3.963 15 C -0.528 4.528 16 H 0.053 0.947 17 C 0.010 3.990 18 N -0.926 5.926 19 Si 0.956 3.044 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.270 1.270 23 C -0.098 4.098 24 C -0.121 4.121 25 C -0.127 4.127 26 C -0.129 4.129 27 C -0.123 4.123 28 C -0.130 4.130 29 H 0.098 0.902 30 H 0.120 0.880 31 H 0.133 0.867 32 H 0.062 0.938 33 H 0.070 0.930 34 H 0.420 0.580 35 H 0.110 0.890 36 H 0.104 0.896 37 H 0.409 0.591 38 H 0.403 0.597 39 H 0.010 0.990 40 H 0.007 0.993 41 H 0.264 0.736 42 H 0.116 0.884 43 H 0.144 0.856 44 H 0.151 0.849 45 H 0.145 0.855 46 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.331 -20.653 -10.534 24.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.200 4.200 3 C 0.022 3.978 4 N -0.361 5.361 5 C 0.301 3.699 6 O -0.452 6.452 7 C -0.005 4.005 8 N -0.393 5.393 9 C 0.407 3.593 10 O -0.511 6.511 11 N -0.365 5.365 12 C 0.114 3.886 13 H 0.079 0.921 14 C 0.000 4.000 15 C -0.566 4.566 16 H 0.071 0.929 17 C -0.189 4.189 18 N -0.566 5.566 19 Si 0.781 3.219 20 H -0.199 1.199 21 H -0.208 1.208 22 H -0.195 1.195 23 C -0.099 4.099 24 C -0.140 4.140 25 C -0.144 4.144 26 C -0.147 4.147 27 C -0.141 4.141 28 C -0.149 4.149 29 H 0.116 0.884 30 H 0.138 0.862 31 H 0.150 0.850 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.258 0.742 35 H 0.128 0.872 36 H 0.122 0.878 37 H 0.246 0.754 38 H 0.238 0.762 39 H 0.028 0.972 40 H 0.026 0.974 41 H 0.073 0.927 42 H 0.134 0.866 43 H 0.161 0.839 44 H 0.169 0.831 45 H 0.163 0.837 46 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -6.153 -20.550 -10.290 23.792 hybrid contribution -0.963 1.190 0.167 1.540 sum -7.116 -19.360 -10.123 22.977 Atomic orbital electron populations 1.24186 0.95760 1.03229 0.96662 1.22949 0.96316 0.97405 1.03287 1.20472 0.91476 0.96792 0.89078 1.45754 1.39728 1.19462 1.31119 1.20609 0.81063 0.82541 0.85717 1.90709 1.69322 1.36802 1.48412 1.20942 0.94640 0.87478 0.97443 1.44670 1.42056 1.20934 1.31651 1.15902 0.79173 0.82466 0.81726 1.90844 1.71335 1.48138 1.40775 1.44948 1.41746 1.17475 1.32337 1.19607 0.83607 0.96204 0.89192 0.92076 1.19139 0.96187 0.88352 0.96322 1.21374 0.98730 0.92866 1.43647 0.92890 1.25777 0.99541 0.97721 0.95822 1.70065 1.31801 1.05062 1.49648 0.85643 0.80048 0.77138 0.79041 1.19855 1.20818 1.19488 1.20489 0.96692 0.97845 0.94907 1.21041 0.97371 1.00256 0.95306 1.21419 0.94002 0.98206 1.00804 1.21459 1.00648 0.99685 0.92910 1.21391 0.95645 0.99607 0.97451 1.21177 0.95812 0.98643 0.99262 0.88407 0.86170 0.84954 0.91967 0.91172 0.74226 0.87228 0.87772 0.75357 0.76234 0.97151 0.97437 0.92749 0.86581 0.83860 0.83128 0.83710 0.86677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.23 14.32 67.79 0.97 -0.26 16 2 C -0.18 -1.55 9.63 25.66 0.25 -1.30 16 3 C 0.14 1.99 6.11 85.64 0.52 2.51 16 4 N -0.71 -9.99 5.55 -466.79 -2.59 -12.58 16 5 C 0.51 11.10 7.90 87.66 0.69 11.79 16 6 O -0.57 -16.87 15.67 -3.05 -0.05 -16.91 16 7 C 0.12 2.76 6.15 85.63 0.53 3.29 16 8 N -0.73 -21.88 5.53 -482.29 -2.67 -24.55 16 9 C 0.71 26.59 8.52 179.06 1.53 28.11 16 10 O -0.63 -27.25 16.01 -4.02 -0.06 -27.32 16 11 N -0.71 -27.73 4.02 -461.40 -1.86 -29.58 16 12 C 0.22 9.60 2.12 44.24 0.09 9.69 16 13 H 0.06 2.95 7.44 -2.38 -0.02 2.93 16 14 C 0.04 1.92 4.50 29.85 0.13 2.05 16 15 C -0.53 -29.26 8.84 25.60 0.23 -29.03 16 16 H 0.05 2.93 7.74 -2.91 -0.02 2.91 16 17 C 0.01 0.56 5.46 84.66 0.46 1.02 16 18 N -0.93 -54.91 13.29 21.45 0.28 -54.63 16 19 Si 0.96 44.39 29.54 68.60 2.03 46.42 16 20 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 21 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 22 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 23 C -0.10 -3.83 4.91 -19.87 -0.10 -3.93 16 24 C -0.12 -4.22 9.33 22.27 0.21 -4.01 16 25 C -0.13 -3.60 10.05 22.27 0.22 -3.38 16 26 C -0.13 -3.37 10.05 22.27 0.22 -3.15 16 27 C -0.12 -3.56 10.05 22.27 0.22 -3.33 16 28 C -0.13 -4.69 9.67 22.27 0.22 -4.47 16 29 H 0.10 0.81 7.84 -2.91 -0.02 0.79 16 30 H 0.12 0.55 8.06 -2.91 -0.02 0.53 16 31 H 0.13 0.73 8.06 -2.91 -0.02 0.70 16 32 H 0.06 1.01 7.79 -2.39 -0.02 0.99 16 33 H 0.07 1.08 8.14 -2.39 -0.02 1.07 16 34 H 0.42 3.38 8.46 -92.71 -0.78 2.59 16 35 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 36 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 37 H 0.41 11.91 7.45 -92.71 -0.69 11.22 16 38 H 0.40 14.73 8.62 -92.71 -0.80 13.93 16 39 H 0.01 0.55 8.14 -2.38 -0.02 0.53 16 40 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 41 H 0.26 14.83 8.31 -92.70 -0.77 14.06 16 42 H 0.12 3.89 7.71 -2.91 -0.02 3.87 16 43 H 0.14 3.17 8.06 -2.91 -0.02 3.15 16 44 H 0.15 2.80 8.06 -2.91 -0.02 2.77 16 45 H 0.15 3.24 8.06 -2.91 -0.02 3.22 16 46 H 0.12 4.09 8.04 -2.91 -0.02 4.07 16 Total: -1.00 -75.01 398.92 0.22 -74.80 By element: Atomic # 1 Polarization: 40.02 SS G_CDS: -1.27 Total: 38.76 kcal Atomic # 6 Polarization: -0.79 SS G_CDS: 6.40 Total: 5.61 kcal Atomic # 7 Polarization: -114.52 SS G_CDS: -6.83 Total: -121.35 kcal Atomic # 8 Polarization: -44.12 SS G_CDS: -0.11 Total: -44.23 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -75.01 0.22 -74.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180838534.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.010 kcal (2) G-P(sol) polarization free energy of solvation -75.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds