Wall clock time and date at job start Tue Mar 31 2020 16:08:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.46834 * 2 1 4 4 N 1.46504 * 109.46971 * 180.02562 * 3 2 1 5 5 C 1.37096 * 119.99620 * 263.61353 * 4 3 2 6 6 H 1.08004 * 120.00286 * 142.24991 * 5 4 3 7 7 C 1.38955 * 120.00226 * 322.25588 * 5 4 3 8 8 N 1.31408 * 120.00046 * 157.61963 * 7 5 4 9 9 Si 1.86798 * 119.99686 * 337.61495 * 7 5 4 10 10 H 1.48503 * 109.46897 * 95.70345 * 9 7 5 11 11 H 1.48498 * 109.47086 * 215.70158 * 9 7 5 12 12 H 1.48499 * 109.47190 * 335.70575 * 9 7 5 13 13 C 1.34773 * 120.00601 * 83.61141 * 4 3 2 14 14 O 1.21289 * 119.99557 * 0.02562 * 13 4 3 15 15 C 1.50693 * 120.00464 * 179.97438 * 13 4 3 16 16 C 1.53001 * 109.47232 * 180.02562 * 15 13 4 17 17 N 1.46505 * 109.47031 * 180.02562 * 16 15 13 18 18 C 1.39278 * 125.82155 * 89.99763 * 17 16 15 19 19 C 1.38665 * 133.33765 * 0.02792 * 18 17 16 20 20 C 1.38099 * 119.85436 * 179.97438 * 19 18 17 21 21 C 1.38442 * 120.28381 * 0.02562 * 20 19 18 22 22 C 1.38105 * 120.27975 * 359.73735 * 21 20 19 23 23 C 1.38662 * 119.85351 * 0.48652 * 22 21 20 24 24 N 1.39284 * 133.33556 * 179.85164 * 23 22 21 25 25 C 1.46504 * 125.81956 * 359.67989 * 24 23 22 26 26 C 1.34639 * 125.81285 * 270.00170 * 17 16 15 27 27 O 1.21691 * 125.16794 * 0.02562 * 26 17 16 28 28 H 1.08997 * 109.47043 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46875 * 299.99763 * 1 2 3 30 30 H 1.09003 * 109.47237 * 59.99616 * 1 2 3 31 31 H 1.09001 * 109.46875 * 240.00237 * 2 1 3 32 32 H 1.08997 * 109.47208 * 119.99915 * 2 1 3 33 33 H 1.08993 * 109.47410 * 60.00238 * 3 2 1 34 34 H 1.09003 * 109.47522 * 300.00210 * 3 2 1 35 35 H 0.97007 * 119.99713 * 179.97438 * 8 7 5 36 36 H 1.09005 * 109.46909 * 59.99925 * 15 13 4 37 37 H 1.09001 * 109.47291 * 300.00676 * 15 13 4 38 38 H 1.08998 * 109.46931 * 60.00658 * 16 15 13 39 39 H 1.09000 * 109.47137 * 299.99623 * 16 15 13 40 40 H 1.08002 * 120.07200 * 359.94558 * 19 18 17 41 41 H 1.08001 * 119.86039 * 179.97438 * 20 19 18 42 42 H 1.07996 * 119.86067 * 179.97438 * 21 20 19 43 43 H 1.08002 * 120.07513 * 180.02562 * 22 21 20 44 44 H 1.08992 * 109.46858 * 89.99678 * 25 24 23 45 45 H 1.09002 * 109.46592 * 210.00103 * 25 24 23 46 46 H 1.09002 * 109.46807 * 329.99401 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1909 1.5744 1.1791 6 1 5.1015 1.0163 1.3397 7 6 3.7146 2.4262 2.1683 8 7 4.0759 2.2476 3.4190 9 14 2.5607 3.8251 1.7200 10 1 1.1552 3.3943 1.9310 11 1 2.8520 5.0014 2.5782 12 1 2.7574 4.1915 0.2944 13 6 4.1785 1.3129 -1.1608 14 8 3.5717 1.1966 -2.2045 15 6 5.6855 1.3135 -1.1614 16 6 6.1949 1.1537 -2.5953 17 7 7.6600 1.1537 -2.5958 18 6 8.4752 0.0313 -2.4710 19 6 8.2144 -1.3222 -2.3205 20 6 9.2615 -2.2172 -2.2215 21 6 10.5703 -1.7687 -2.2713 22 6 10.8399 -0.4231 -2.4258 23 6 9.7952 0.4836 -2.5214 24 7 9.7411 1.8669 -2.6754 25 6 10.8949 2.7643 -2.7748 26 6 8.4478 2.2388 -2.7170 27 8 8.0512 3.3823 -2.8438 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.6767 1.9563 0.8899 34 1 1.6766 1.9564 -0.8900 35 1 3.7437 2.8425 4.1095 36 1 6.0494 0.4863 -0.5518 37 1 6.0486 2.2552 -0.7499 38 1 5.8311 1.9811 -3.2044 39 1 5.8319 0.2121 -3.0070 40 1 7.1947 -1.6757 -2.2803 41 1 9.0585 -3.2714 -2.1038 42 1 11.3839 -2.4745 -2.1928 43 1 11.8622 -0.0769 -2.4647 44 1 11.1814 2.8731 -3.8208 45 1 10.6323 3.7402 -2.3665 46 1 11.7293 2.3470 -2.2110 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193869568.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:39 Heat of formation + Delta-G solvation = -2.035990 kcal Electronic energy + Delta-G solvation = -28713.102398 eV Core-core repulsion = 24797.016429 eV Total energy + Delta-G solvation = -3916.085970 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.43447 -39.01234 -38.29879 -36.06954 -35.82314 -35.21660 -33.08543 -31.81072 -31.42197 -30.52953 -28.88735 -27.57273 -26.02714 -24.99426 -23.45500 -22.45883 -22.33512 -21.18706 -20.24880 -19.01478 -17.95658 -17.50042 -17.07698 -16.38240 -16.16763 -15.98922 -15.38031 -15.00185 -14.69660 -14.34465 -14.23326 -14.18660 -14.05440 -13.75753 -13.55560 -13.13154 -13.00343 -12.94260 -12.59146 -12.43774 -12.29677 -12.16874 -11.96883 -11.57121 -11.48954 -11.21774 -11.01479 -10.82661 -10.73860 -10.53419 -10.45746 -10.37381 -10.30609 -10.05140 -9.80644 -9.23969 -8.68017 -8.40747 -7.85029 -7.75792 -6.54319 -4.13152 1.14165 1.31534 2.17460 3.00449 3.02509 3.19695 3.22365 3.29551 3.64579 3.66285 4.08985 4.33104 4.44886 4.65180 4.83412 4.89532 5.04509 5.13574 5.15671 5.21349 5.35105 5.42182 5.45717 5.53131 5.57008 5.61821 5.67818 5.77741 5.86351 5.96966 6.00844 6.11609 6.22245 6.32128 6.33364 6.37055 6.39331 6.41602 6.50797 6.53992 6.61559 6.74612 6.82031 6.87804 7.32233 7.36766 8.01150 8.18458 8.28225 8.88847 9.28020 9.62294 10.56195 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.013659 B = 0.003476 C = 0.003224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2049.366701 B = 8052.728933 C = 8681.707493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.131 4.131 3 C 0.104 3.896 4 N -0.459 5.459 5 C -0.349 4.349 6 H 0.104 0.896 7 C 0.070 3.930 8 N -0.855 5.855 9 Si 0.873 3.127 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.260 1.260 13 C 0.484 3.516 14 O -0.602 6.602 15 C -0.134 4.134 16 C 0.147 3.853 17 N -0.534 5.534 18 C 0.099 3.901 19 C -0.102 4.102 20 C -0.111 4.111 21 C -0.116 4.116 22 C -0.108 4.108 23 C 0.086 3.914 24 N -0.546 5.546 25 C 0.103 3.897 26 C 0.678 3.322 27 O -0.550 6.550 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.276 0.724 36 H 0.088 0.912 37 H 0.095 0.905 38 H 0.098 0.902 39 H 0.094 0.906 40 H 0.132 0.868 41 H 0.131 0.869 42 H 0.130 0.870 43 H 0.126 0.874 44 H 0.066 0.934 45 H 0.086 0.914 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.657 -7.341 -9.085 16.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.169 4.169 3 C -0.019 4.019 4 N -0.179 5.179 5 C -0.475 4.475 6 H 0.121 0.879 7 C -0.138 4.138 8 N -0.490 5.490 9 Si 0.700 3.300 10 H -0.200 1.200 11 H -0.213 1.213 12 H -0.184 1.184 13 C 0.273 3.727 14 O -0.488 6.488 15 C -0.175 4.175 16 C 0.026 3.974 17 N -0.254 5.254 18 C -0.003 4.003 19 C -0.123 4.123 20 C -0.131 4.131 21 C -0.136 4.136 22 C -0.129 4.129 23 C -0.015 4.015 24 N -0.268 5.268 25 C -0.039 4.039 26 C 0.381 3.619 27 O -0.426 6.426 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.106 0.894 37 H 0.113 0.887 38 H 0.116 0.884 39 H 0.112 0.888 40 H 0.150 0.850 41 H 0.149 0.851 42 H 0.147 0.853 43 H 0.144 0.856 44 H 0.085 0.915 45 H 0.105 0.895 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 11.005 -6.348 -9.468 15.845 hybrid contribution -0.503 0.861 0.313 1.045 sum 10.503 -5.486 -9.155 14.974 Atomic orbital electron populations 1.21708 0.96342 1.01070 1.01398 1.21759 0.94853 0.97888 1.02440 1.21653 0.82430 0.96762 1.01090 1.43739 1.04035 1.63830 1.06268 1.19053 1.11006 1.26655 0.90822 0.87873 1.25323 0.96832 0.97010 0.94594 1.69771 1.43390 1.36228 0.99614 0.86995 0.80542 0.82511 0.79985 1.19987 1.21302 1.18439 1.20065 0.88914 0.80500 0.83255 1.90548 1.70472 1.56108 1.31646 1.21677 0.94624 1.05089 0.96113 1.21432 0.72674 1.04983 0.98261 1.45380 1.07449 1.05003 1.67590 1.18147 0.88114 0.89750 1.04258 1.20171 1.00622 0.88860 1.02677 1.20848 0.91848 0.99406 1.00988 1.20805 0.96949 0.94285 1.01542 1.19990 0.96770 0.91927 1.04210 1.18098 0.94334 0.83460 1.05635 1.45024 1.06956 1.05573 1.69261 1.21686 0.85732 0.93896 1.02558 1.16004 0.80453 0.84789 0.80665 1.91043 1.76381 1.17391 1.57754 0.93008 0.93016 0.93005 0.91868 0.91414 0.91385 0.91735 0.91409 0.89396 0.88666 0.88360 0.88815 0.85023 0.85101 0.85251 0.85598 0.91541 0.89494 0.90076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 9.91 37.16 0.37 -1.95 16 2 C -0.13 -2.52 6.21 -26.73 -0.17 -2.68 16 3 C 0.10 2.30 3.93 -4.04 -0.02 2.29 16 4 N -0.46 -11.04 2.18 -114.81 -0.25 -11.29 16 5 C -0.35 -9.02 9.05 -14.93 -0.14 -9.15 16 6 H 0.10 2.78 7.24 -52.48 -0.38 2.40 16 7 C 0.07 1.86 5.26 -17.47 -0.09 1.77 16 8 N -0.86 -23.50 13.96 55.50 0.77 -22.73 16 9 Si 0.87 20.73 25.06 -169.99 -4.26 16.47 16 10 H -0.27 -6.17 6.69 56.52 0.38 -5.80 16 11 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.26 -6.38 7.11 56.52 0.40 -5.98 16 13 C 0.48 11.09 7.58 -10.99 -0.08 11.01 16 14 O -0.60 -14.47 15.67 5.55 0.09 -14.38 16 15 C -0.13 -2.68 4.72 -27.89 -0.13 -2.81 16 16 C 0.15 2.59 5.26 -4.04 -0.02 2.56 16 17 N -0.53 -8.91 2.78 -118.90 -0.33 -9.24 16 18 C 0.10 1.42 6.83 -83.80 -0.57 0.84 16 19 C -0.10 -1.21 10.02 -39.47 -0.40 -1.61 16 20 C -0.11 -1.04 10.03 -39.56 -0.40 -1.44 16 21 C -0.12 -1.00 10.03 -39.56 -0.40 -1.39 16 22 C -0.11 -1.05 10.02 -39.47 -0.40 -1.44 16 23 C 0.09 1.12 6.83 -83.80 -0.57 0.54 16 24 N -0.55 -7.66 3.19 -126.32 -0.40 -8.06 16 25 C 0.10 1.00 11.01 59.85 0.66 1.66 16 26 C 0.68 12.06 8.45 -87.16 -0.74 11.32 16 27 O -0.55 -11.56 17.48 5.20 0.09 -11.47 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 33 H 0.07 1.55 3.65 -51.93 -0.19 1.36 16 34 H 0.06 1.43 7.62 -51.93 -0.40 1.04 16 35 H 0.28 7.09 8.31 -40.82 -0.34 6.75 16 36 H 0.09 1.68 7.67 -51.93 -0.40 1.29 16 37 H 0.09 2.07 8.10 -51.93 -0.42 1.64 16 38 H 0.10 1.86 7.99 -51.93 -0.41 1.45 16 39 H 0.09 1.50 8.10 -51.93 -0.42 1.08 16 40 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 41 H 0.13 0.91 8.06 -52.49 -0.42 0.48 16 42 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 43 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 44 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.09 0.90 8.03 -51.93 -0.42 0.48 16 46 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 382.30 15.07 5.76 5.76 Total: -1.00 -32.29 382.30 -8.46 -40.75 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -6.85 Total: 4.66 kcal Atomic # 6 Polarization: 12.61 SS G_CDS: -3.08 Total: 9.52 kcal Atomic # 7 Polarization: -51.10 SS G_CDS: -0.21 Total: -51.31 kcal Atomic # 8 Polarization: -26.03 SS G_CDS: 0.18 Total: -25.85 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -4.26 Total: 16.47 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.29 -8.46 -40.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193869568.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.711 kcal (2) G-P(sol) polarization free energy of solvation -32.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds