Wall clock time and date at job start Tue Mar 31 2020 16:08:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.46834 * 2 1 4 4 N 1.46504 * 109.46971 * 180.02562 * 3 2 1 5 5 C 1.37096 * 119.99620 * 263.61353 * 4 3 2 6 6 H 1.08004 * 120.00286 * 142.24991 * 5 4 3 7 7 C 1.38955 * 120.00226 * 322.25588 * 5 4 3 8 8 N 1.31408 * 120.00046 * 157.61963 * 7 5 4 9 9 Si 1.86798 * 119.99686 * 337.61495 * 7 5 4 10 10 H 1.48503 * 109.46897 * 95.70345 * 9 7 5 11 11 H 1.48498 * 109.47086 * 215.70158 * 9 7 5 12 12 H 1.48499 * 109.47190 * 335.70575 * 9 7 5 13 13 C 1.34773 * 120.00601 * 83.61141 * 4 3 2 14 14 O 1.21289 * 119.99557 * 0.02562 * 13 4 3 15 15 C 1.50693 * 120.00464 * 179.97438 * 13 4 3 16 16 C 1.53001 * 109.47232 * 180.02562 * 15 13 4 17 17 N 1.46505 * 109.47031 * 180.02562 * 16 15 13 18 18 C 1.39278 * 125.82155 * 89.99763 * 17 16 15 19 19 C 1.38665 * 133.33765 * 0.02792 * 18 17 16 20 20 C 1.38099 * 119.85436 * 179.97438 * 19 18 17 21 21 C 1.38442 * 120.28381 * 0.02562 * 20 19 18 22 22 C 1.38105 * 120.27975 * 359.73735 * 21 20 19 23 23 C 1.38662 * 119.85351 * 0.48652 * 22 21 20 24 24 N 1.39284 * 133.33556 * 179.85164 * 23 22 21 25 25 C 1.46504 * 125.81956 * 359.67989 * 24 23 22 26 26 C 1.34639 * 125.81285 * 270.00170 * 17 16 15 27 27 O 1.21691 * 125.16794 * 0.02562 * 26 17 16 28 28 H 1.08997 * 109.47043 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46875 * 299.99763 * 1 2 3 30 30 H 1.09003 * 109.47237 * 59.99616 * 1 2 3 31 31 H 1.09001 * 109.46875 * 240.00237 * 2 1 3 32 32 H 1.08997 * 109.47208 * 119.99915 * 2 1 3 33 33 H 1.08993 * 109.47410 * 60.00238 * 3 2 1 34 34 H 1.09003 * 109.47522 * 300.00210 * 3 2 1 35 35 H 0.97007 * 119.99713 * 179.97438 * 8 7 5 36 36 H 1.09005 * 109.46909 * 59.99925 * 15 13 4 37 37 H 1.09001 * 109.47291 * 300.00676 * 15 13 4 38 38 H 1.08998 * 109.46931 * 60.00658 * 16 15 13 39 39 H 1.09000 * 109.47137 * 299.99623 * 16 15 13 40 40 H 1.08002 * 120.07200 * 359.94558 * 19 18 17 41 41 H 1.08001 * 119.86039 * 179.97438 * 20 19 18 42 42 H 1.07996 * 119.86067 * 179.97438 * 21 20 19 43 43 H 1.08002 * 120.07513 * 180.02562 * 22 21 20 44 44 H 1.08992 * 109.46858 * 89.99678 * 25 24 23 45 45 H 1.09002 * 109.46592 * 210.00103 * 25 24 23 46 46 H 1.09002 * 109.46807 * 329.99401 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1909 1.5744 1.1791 6 1 5.1015 1.0163 1.3397 7 6 3.7146 2.4262 2.1683 8 7 4.0759 2.2476 3.4190 9 14 2.5607 3.8251 1.7200 10 1 1.1552 3.3943 1.9310 11 1 2.8520 5.0014 2.5782 12 1 2.7574 4.1915 0.2944 13 6 4.1785 1.3129 -1.1608 14 8 3.5717 1.1966 -2.2045 15 6 5.6855 1.3135 -1.1614 16 6 6.1949 1.1537 -2.5953 17 7 7.6600 1.1537 -2.5958 18 6 8.4752 0.0313 -2.4710 19 6 8.2144 -1.3222 -2.3205 20 6 9.2615 -2.2172 -2.2215 21 6 10.5703 -1.7687 -2.2713 22 6 10.8399 -0.4231 -2.4258 23 6 9.7952 0.4836 -2.5214 24 7 9.7411 1.8669 -2.6754 25 6 10.8949 2.7643 -2.7748 26 6 8.4478 2.2388 -2.7170 27 8 8.0512 3.3823 -2.8438 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.6767 1.9563 0.8899 34 1 1.6766 1.9564 -0.8900 35 1 3.7437 2.8425 4.1095 36 1 6.0494 0.4863 -0.5518 37 1 6.0486 2.2552 -0.7499 38 1 5.8311 1.9811 -3.2044 39 1 5.8319 0.2121 -3.0070 40 1 7.1947 -1.6757 -2.2803 41 1 9.0585 -3.2714 -2.1038 42 1 11.3839 -2.4745 -2.1928 43 1 11.8622 -0.0769 -2.4647 44 1 11.1814 2.8731 -3.8208 45 1 10.6323 3.7402 -2.3665 46 1 11.7293 2.3470 -2.2110 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193869568.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:38 Heat of formation + Delta-G solvation = -20.054150 kcal Electronic energy + Delta-G solvation = -28713.883724 eV Core-core repulsion = 24797.016429 eV Total energy + Delta-G solvation = -3916.867296 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.53277 -40.86960 -39.36330 -37.54179 -36.96828 -36.79923 -34.81744 -33.66700 -32.83925 -31.36012 -29.95627 -28.66997 -27.57163 -26.84526 -24.86147 -23.40105 -23.37187 -22.72552 -21.43000 -20.93510 -18.99214 -18.94253 -18.57316 -17.90088 -17.62195 -17.20985 -17.09560 -16.51236 -16.20019 -15.85642 -15.44967 -15.34473 -15.05775 -14.99015 -14.84561 -14.69381 -14.53222 -14.19834 -13.97822 -13.89138 -13.48427 -13.36480 -13.32344 -13.14796 -13.00343 -12.61458 -12.54831 -12.36240 -12.15532 -11.99627 -11.96256 -11.71209 -11.57225 -11.50682 -11.42941 -11.13696 -10.56534 -9.80944 -9.32570 -8.81788 -8.59971 -6.20092 0.28448 0.45151 1.04343 1.11720 1.25317 1.36704 1.72370 1.77020 2.10644 2.16062 2.58327 2.82365 2.89540 3.52182 3.60739 3.88553 3.90589 3.97890 4.01663 4.12190 4.16026 4.27858 4.37546 4.38668 4.43614 4.44422 4.48113 4.53928 4.55517 4.65123 4.69110 4.77907 4.83814 4.93180 4.94049 5.09987 5.14228 5.22703 5.27591 5.30529 5.46378 5.54902 5.61364 5.71833 5.84204 5.96471 6.17984 6.30745 6.86342 7.02606 7.30710 7.67513 8.54219 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.013659 B = 0.003476 C = 0.003224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2049.366701 B = 8052.728933 C = 8681.707493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.123 4.123 3 C 0.096 3.904 4 N -0.470 5.470 5 C -0.346 4.346 6 H 0.084 0.916 7 C 0.036 3.964 8 N -0.888 5.888 9 Si 0.918 3.082 10 H -0.250 1.250 11 H -0.282 1.282 12 H -0.276 1.276 13 C 0.481 3.519 14 O -0.611 6.611 15 C -0.120 4.120 16 C 0.161 3.839 17 N -0.539 5.539 18 C 0.060 3.940 19 C -0.115 4.115 20 C -0.104 4.104 21 C -0.102 4.102 22 C -0.100 4.100 23 C 0.068 3.932 24 N -0.541 5.541 25 C 0.094 3.906 26 C 0.659 3.341 27 O -0.602 6.602 28 H 0.076 0.924 29 H 0.054 0.946 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.281 0.719 36 H 0.094 0.906 37 H 0.072 0.928 38 H 0.078 0.922 39 H 0.109 0.891 40 H 0.131 0.869 41 H 0.161 0.839 42 H 0.170 0.830 43 H 0.159 0.841 44 H 0.083 0.917 45 H 0.073 0.927 46 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.924 -9.561 -9.470 18.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.162 4.162 3 C -0.026 4.026 4 N -0.190 5.190 5 C -0.473 4.473 6 H 0.101 0.899 7 C -0.169 4.169 8 N -0.525 5.525 9 Si 0.743 3.257 10 H -0.175 1.175 11 H -0.209 1.209 12 H -0.201 1.201 13 C 0.271 3.729 14 O -0.498 6.498 15 C -0.161 4.161 16 C 0.039 3.961 17 N -0.259 5.259 18 C -0.040 4.040 19 C -0.136 4.136 20 C -0.123 4.123 21 C -0.122 4.122 22 C -0.121 4.121 23 C -0.032 4.032 24 N -0.262 5.262 25 C -0.046 4.046 26 C 0.361 3.639 27 O -0.482 6.482 28 H 0.095 0.905 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.091 0.909 36 H 0.112 0.888 37 H 0.090 0.910 38 H 0.096 0.904 39 H 0.128 0.872 40 H 0.149 0.851 41 H 0.179 0.821 42 H 0.188 0.812 43 H 0.177 0.823 44 H 0.102 0.898 45 H 0.092 0.908 46 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 12.309 -8.626 -9.849 17.970 hybrid contribution -0.750 1.383 0.396 1.622 sum 11.559 -7.244 -9.453 16.597 Atomic orbital electron populations 1.21683 0.93282 1.02957 1.02012 1.21680 0.97478 0.95440 1.01573 1.21809 0.81349 0.98810 1.00650 1.43875 1.04989 1.64260 1.05909 1.18919 1.10657 1.26386 0.91373 0.89852 1.25788 0.98296 0.98395 0.94435 1.69815 1.45017 1.37297 1.00335 0.86277 0.80450 0.80321 0.78630 1.17545 1.20886 1.20078 1.20485 0.89995 0.79603 0.82859 1.90527 1.71042 1.56359 1.31842 1.21537 0.92726 1.03973 0.97858 1.21140 0.74017 1.04854 0.96113 1.45251 1.06911 1.06069 1.67710 1.18557 0.88440 0.90014 1.06961 1.20419 1.01717 0.88310 1.03183 1.21289 0.91634 1.00419 0.99007 1.21343 0.97673 0.94410 0.98740 1.20467 0.97395 0.91812 1.02381 1.18492 0.94791 0.83058 1.06897 1.45134 1.06284 1.06768 1.68064 1.22015 0.85214 0.93047 1.04281 1.16314 0.81902 0.84383 0.81265 1.90975 1.77560 1.19210 1.60446 0.90539 0.92639 0.92155 0.92470 0.92465 0.91876 0.91906 0.90886 0.88799 0.90962 0.90386 0.87240 0.85086 0.82139 0.81241 0.82323 0.89829 0.90826 0.86581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.14 9.91 71.98 0.71 -3.43 16 2 C -0.12 -4.65 6.21 30.60 0.19 -4.46 16 3 C 0.10 4.27 3.93 86.38 0.34 4.61 16 4 N -0.47 -23.08 2.18 -635.55 -1.39 -24.47 16 5 C -0.35 -18.41 9.05 84.04 0.76 -17.65 16 6 H 0.08 4.69 7.24 -2.91 -0.02 4.67 16 7 C 0.04 1.94 5.26 84.93 0.45 2.39 16 8 N -0.89 -49.47 13.96 21.66 0.30 -49.17 16 9 Si 0.92 42.89 25.06 68.60 1.72 44.61 16 10 H -0.25 -10.71 6.69 99.48 0.67 -10.04 16 11 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 12 H -0.28 -13.51 7.11 99.48 0.71 -12.81 16 13 C 0.48 22.73 7.58 87.66 0.66 23.40 16 14 O -0.61 -29.93 15.67 -3.06 -0.05 -29.98 16 15 C -0.12 -5.05 4.72 29.85 0.14 -4.91 16 16 C 0.16 5.96 5.26 86.38 0.45 6.41 16 17 N -0.54 -18.87 2.78 -648.39 -1.81 -20.68 16 18 C 0.06 1.72 6.83 38.40 0.26 1.98 16 19 C -0.12 -2.60 10.02 22.34 0.22 -2.37 16 20 C -0.10 -1.59 10.03 22.29 0.22 -1.37 16 21 C -0.10 -1.27 10.03 22.29 0.22 -1.05 16 22 C -0.10 -1.56 10.02 22.34 0.22 -1.34 16 23 C 0.07 1.67 6.83 38.39 0.26 1.94 16 24 N -0.54 -15.22 3.19 -671.86 -2.14 -17.36 16 25 C 0.09 1.76 11.01 127.77 1.41 3.16 16 26 C 0.66 24.74 8.45 179.14 1.51 26.25 16 27 O -0.60 -27.20 17.48 -4.32 -0.08 -27.28 16 28 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 32 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 33 H 0.06 2.84 3.65 -2.39 -0.01 2.83 16 34 H 0.06 2.78 7.62 -2.39 -0.02 2.76 16 35 H 0.28 14.57 8.31 -92.70 -0.77 13.80 16 36 H 0.09 3.78 7.67 -2.38 -0.02 3.77 16 37 H 0.07 3.37 8.10 -2.39 -0.02 3.35 16 38 H 0.08 3.18 7.99 -2.39 -0.02 3.16 16 39 H 0.11 3.63 8.10 -2.39 -0.02 3.61 16 40 H 0.13 2.85 8.06 -2.91 -0.02 2.83 16 41 H 0.16 1.50 8.06 -2.91 -0.02 1.47 16 42 H 0.17 0.84 8.06 -2.91 -0.02 0.82 16 43 H 0.16 1.42 8.06 -2.91 -0.02 1.40 16 44 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 45 H 0.07 1.57 8.03 -2.39 -0.02 1.55 16 46 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -73.39 382.30 5.55 -67.84 By element: Atomic # 1 Polarization: 21.99 SS G_CDS: 0.94 Total: 22.93 kcal Atomic # 6 Polarization: 25.50 SS G_CDS: 8.05 Total: 33.55 kcal Atomic # 7 Polarization: -106.65 SS G_CDS: -5.03 Total: -111.68 kcal Atomic # 8 Polarization: -57.13 SS G_CDS: -0.12 Total: -57.25 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 1.72 Total: 44.61 kcal Total: -73.39 5.55 -67.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193869568.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.786 kcal (2) G-P(sol) polarization free energy of solvation -73.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds