Wall clock time and date at job start Tue Mar 31 2020 16:08:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53007 * 109.46861 * 2 1 4 4 N 1.46497 * 109.47070 * 186.22780 * 3 2 1 5 5 C 1.36907 * 119.99677 * 286.24706 * 4 3 2 6 6 H 1.08002 * 119.99752 * 166.09324 * 5 4 3 7 7 C 1.39017 * 120.00272 * 346.09327 * 5 4 3 8 8 N 1.31384 * 119.99466 * 16.34913 * 7 5 4 9 9 Si 1.86797 * 120.00015 * 196.35122 * 7 5 4 10 10 H 1.48497 * 109.47313 * 59.99560 * 9 7 5 11 11 H 1.48494 * 109.47100 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.46972 * 300.00051 * 9 7 5 13 13 C 1.34770 * 120.00209 * 106.25153 * 4 3 2 14 14 O 1.21632 * 120.00516 * 186.45190 * 13 4 3 15 15 C 1.47422 * 119.99938 * 6.44700 * 13 4 3 16 16 C 1.39843 * 120.09067 * 319.08360 * 15 13 4 17 17 C 1.37664 * 120.14343 * 180.29612 * 16 15 13 18 18 C 1.39127 * 120.18209 * 359.48321 * 17 16 15 19 19 C 1.39804 * 119.85924 * 0.38632 * 18 17 16 20 20 C 1.38010 * 120.22677 * 359.93820 * 19 18 17 21 21 N 1.40359 * 119.45114 * 180.02562 * 19 18 17 22 22 C 1.35148 * 118.51641 * 18.18524 * 21 19 18 23 23 O 1.21296 * 120.31800 * 180.70416 * 22 21 19 24 24 C 1.50693 * 119.36693 * 0.73030 * 22 21 19 25 25 H 1.08992 * 109.28262 * 85.12185 * 24 22 21 26 26 C 1.53004 * 109.37193 * 204.82873 * 24 22 21 27 27 N 1.39082 * 119.98314 * 180.10386 * 18 17 16 28 28 C 1.46900 * 110.99914 * 19.72036 * 27 18 17 29 29 H 1.09000 * 109.46605 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46846 * 299.99739 * 1 2 3 31 31 H 1.08992 * 109.47408 * 60.00031 * 1 2 3 32 32 H 1.08996 * 109.47250 * 240.00335 * 2 1 3 33 33 H 1.08996 * 109.47611 * 119.99524 * 2 1 3 34 34 H 1.09000 * 109.47276 * 66.22382 * 3 2 1 35 35 H 1.09009 * 109.46780 * 306.22672 * 3 2 1 36 36 H 0.97006 * 119.99477 * 179.97438 * 8 7 5 37 37 H 1.07997 * 119.92433 * 0.04149 * 16 15 13 38 38 H 1.08004 * 119.91061 * 179.75406 * 17 16 15 39 39 H 1.08001 * 120.11708 * 179.84415 * 20 19 18 40 40 H 0.97000 * 120.73907 * 198.20703 * 21 19 18 41 41 H 1.09002 * 109.47003 * 180.57829 * 26 24 22 42 42 H 1.08999 * 109.47236 * 300.58269 * 26 24 22 43 43 H 1.09004 * 109.47150 * 60.58045 * 26 24 22 44 44 H 1.08991 * 109.47563 * 56.04028 * 28 27 18 45 45 H 1.09001 * 109.47532 * 176.04685 * 28 27 18 46 46 H 1.09002 * 109.46769 * 296.03983 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.4973 1.4454 -0.1498 5 6 4.2940 1.0740 0.8998 6 1 5.3392 0.8583 0.7344 7 6 3.7576 0.9745 2.1784 8 7 2.4552 0.9171 2.3417 9 14 4.8885 0.9227 3.6643 10 1 5.7010 2.1648 3.7116 11 1 4.0751 0.8151 4.9019 12 1 5.7887 -0.2539 3.5603 13 6 4.0536 1.8136 -1.3208 14 8 5.2539 1.7046 -1.4849 15 6 3.2074 2.3484 -2.4030 16 6 1.9612 1.7721 -2.6685 17 6 1.1727 2.2668 -3.6828 18 6 1.6068 3.3490 -4.4417 19 6 2.8508 3.9298 -4.1780 20 6 3.6487 3.4341 -3.1668 21 7 3.2800 5.0216 -4.9486 22 6 2.3597 5.7132 -5.6565 23 8 2.6963 6.6545 -6.3435 24 6 0.9111 5.3042 -5.5837 25 1 0.4480 5.7726 -4.7154 26 6 0.1899 5.7627 -6.8528 27 7 0.8059 3.8468 -5.4641 28 6 -0.5923 3.4327 -5.2865 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5137 0.8900 34 1 1.7705 1.9233 0.9404 35 1 1.5884 1.9876 -0.8291 36 1 2.0809 0.8474 3.2340 37 1 1.6184 0.9346 -2.0791 38 1 0.2126 1.8163 -3.8871 39 1 4.6105 3.8826 -2.9663 40 1 4.2163 5.2738 -4.9728 41 1 -0.8604 5.4766 -6.7973 42 1 0.2672 6.8462 -6.9433 43 1 0.6492 5.2918 -7.7220 44 1 -0.9435 3.7504 -4.3048 45 1 -1.2084 3.8926 -6.0592 46 1 -0.6625 2.3477 -5.3639 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267331808.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:11 Heat of formation + Delta-G solvation = 3.088219 kcal Electronic energy + Delta-G solvation = -29322.490903 eV Core-core repulsion = 25406.627136 eV Total energy + Delta-G solvation = -3915.863767 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.44558 -39.40212 -38.30308 -36.75431 -35.49889 -35.06153 -32.46224 -31.84518 -31.41673 -29.70627 -28.98214 -27.35085 -25.86976 -24.73147 -23.57838 -22.85968 -22.10991 -20.72881 -20.17486 -18.87663 -18.07944 -17.71912 -16.95949 -16.85776 -16.01304 -15.75867 -15.03712 -14.70150 -14.48092 -14.32861 -14.17795 -14.10654 -13.92595 -13.80382 -13.54574 -13.06527 -12.85592 -12.58202 -12.42205 -12.24955 -12.15233 -11.93493 -11.71074 -11.67242 -11.46996 -11.06015 -11.02793 -10.82813 -10.56126 -10.42330 -10.33838 -10.23893 -10.18985 -10.01200 -9.58697 -8.83215 -8.53981 -8.34644 -7.88808 -7.46735 -6.35531 -3.88658 1.15081 1.42730 2.34974 2.90287 3.11802 3.18594 3.23165 3.39103 3.64539 3.97205 4.07233 4.22178 4.60955 4.62423 4.74200 4.80044 4.98575 5.04218 5.18611 5.27450 5.33308 5.38716 5.50309 5.55170 5.60774 5.66247 5.86532 5.89520 5.92714 5.96322 5.96973 6.15428 6.27988 6.38961 6.55862 6.58303 6.65701 6.71274 6.76099 6.81094 6.87822 6.95167 7.25469 7.29850 7.56798 7.66031 7.86474 8.00016 8.43454 9.07128 9.32144 9.88930 10.50669 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.018534 B = 0.003428 C = 0.003058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.347296 B = 8166.846636 C = 9154.929291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.120 4.120 3 C 0.092 3.908 4 N -0.425 5.425 5 C -0.295 4.295 6 H 0.105 0.895 7 C 0.030 3.970 8 N -0.864 5.864 9 Si 0.928 3.072 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.273 1.273 13 C 0.469 3.531 14 O -0.593 6.593 15 C -0.082 4.082 16 C -0.095 4.095 17 C -0.140 4.140 18 C 0.077 3.923 19 C 0.106 3.894 20 C -0.083 4.083 21 N -0.657 5.657 22 C 0.529 3.471 23 O -0.524 6.524 24 C 0.066 3.934 25 H 0.083 0.917 26 C -0.133 4.133 27 N -0.482 5.482 28 C 0.018 3.982 29 H 0.041 0.959 30 H 0.055 0.945 31 H 0.037 0.963 32 H 0.030 0.970 33 H 0.098 0.902 34 H 0.122 0.878 35 H 0.051 0.949 36 H 0.268 0.732 37 H 0.148 0.852 38 H 0.134 0.866 39 H 0.135 0.865 40 H 0.415 0.585 41 H 0.069 0.931 42 H 0.077 0.923 43 H 0.070 0.930 44 H 0.046 0.954 45 H 0.081 0.919 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.937 4.324 -10.067 15.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.158 4.158 3 C -0.031 4.031 4 N -0.141 5.141 5 C -0.423 4.423 6 H 0.123 0.877 7 C -0.172 4.172 8 N -0.504 5.504 9 Si 0.755 3.245 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.198 1.198 13 C 0.258 3.742 14 O -0.480 6.480 15 C -0.087 4.087 16 C -0.115 4.115 17 C -0.162 4.162 18 C -0.024 4.024 19 C 0.009 3.991 20 C -0.105 4.105 21 N -0.303 5.303 22 C 0.315 3.685 23 O -0.398 6.398 24 C -0.044 4.044 25 H 0.101 0.899 26 C -0.191 4.191 27 N -0.198 5.198 28 C -0.128 4.128 29 H 0.060 0.940 30 H 0.074 0.926 31 H 0.057 0.943 32 H 0.049 0.951 33 H 0.116 0.884 34 H 0.139 0.861 35 H 0.069 0.931 36 H 0.079 0.921 37 H 0.165 0.835 38 H 0.152 0.848 39 H 0.153 0.847 40 H 0.254 0.746 41 H 0.088 0.912 42 H 0.095 0.905 43 H 0.089 0.911 44 H 0.065 0.935 45 H 0.099 0.901 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -10.366 4.612 -10.824 15.681 hybrid contribution 0.586 0.155 1.445 1.567 sum -9.780 4.767 -9.379 14.365 Atomic orbital electron populations 1.21644 0.97291 1.00111 1.00722 1.21836 0.93681 0.98258 1.02014 1.22591 0.79946 0.97232 1.03326 1.43731 1.06229 1.54134 1.09994 1.19758 0.94714 1.42753 0.85052 0.87704 1.25342 0.96344 0.96509 0.99006 1.70028 1.10108 1.47355 1.22959 0.85958 0.79696 0.79231 0.79659 1.19841 1.20872 1.19820 1.17650 0.87443 0.85964 0.83127 1.90626 1.15004 1.61088 1.81281 1.20040 0.94900 0.96297 0.97498 1.21729 0.93021 1.00526 0.96195 1.20816 1.01260 0.97820 0.96271 1.18553 0.93309 0.97919 0.92573 1.17281 0.94950 0.91379 0.95446 1.20576 0.99705 0.96842 0.93364 1.43721 1.11409 1.29247 1.45920 1.20598 0.87888 0.81764 0.78212 1.90751 1.81385 1.28238 1.39458 1.21757 0.93361 0.87590 1.01685 0.89947 1.21743 0.99653 1.02365 0.95317 1.58430 1.09913 1.09702 1.41725 1.22664 0.85904 1.02765 1.01453 0.94018 0.92580 0.94344 0.95090 0.88401 0.86087 0.93103 0.92124 0.83499 0.84810 0.84710 0.74648 0.91198 0.90457 0.91123 0.93532 0.90084 0.89717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 9.88 37.16 0.37 -1.78 16 2 C -0.12 -2.31 4.68 -26.73 -0.13 -2.44 16 3 C 0.09 1.91 4.18 -4.04 -0.02 1.90 16 4 N -0.43 -10.37 2.69 -116.03 -0.31 -10.68 16 5 C -0.30 -7.75 9.26 -15.00 -0.14 -7.89 16 6 H 0.11 2.93 7.27 -52.49 -0.38 2.55 16 7 C 0.03 0.74 5.29 -17.45 -0.09 0.65 16 8 N -0.86 -20.27 7.67 55.50 0.43 -19.84 16 9 Si 0.93 19.61 29.58 -169.99 -5.03 14.58 16 10 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 11 H -0.28 -5.84 7.11 56.52 0.40 -5.43 16 12 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 13 C 0.47 11.34 7.26 -12.52 -0.09 11.25 16 14 O -0.59 -16.38 16.56 5.25 0.09 -16.30 16 15 C -0.08 -1.59 5.33 -104.94 -0.56 -2.15 16 16 C -0.09 -1.56 7.30 -39.19 -0.29 -1.84 16 17 C -0.14 -1.89 8.93 -39.46 -0.35 -2.24 16 18 C 0.08 1.06 5.91 -83.66 -0.49 0.56 16 19 C 0.11 1.59 6.49 -83.45 -0.54 1.05 16 20 C -0.08 -1.43 9.53 -39.05 -0.37 -1.80 16 21 N -0.66 -9.01 5.49 -9.65 -0.05 -9.06 16 22 C 0.53 7.31 7.66 -10.82 -0.08 7.23 16 23 O -0.52 -8.34 16.95 5.54 0.09 -8.24 16 24 C 0.07 0.73 2.55 -69.02 -0.18 0.56 16 25 H 0.08 0.85 8.13 -51.93 -0.42 0.43 16 26 C -0.13 -1.19 8.63 37.16 0.32 -0.86 16 27 N -0.48 -5.52 4.65 -172.74 -0.80 -6.33 16 28 C 0.02 0.15 8.30 60.06 0.50 0.64 16 29 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.04 0.51 7.98 -51.93 -0.41 0.10 16 32 H 0.03 0.59 7.20 -51.93 -0.37 0.22 16 33 H 0.10 2.18 6.19 -51.93 -0.32 1.86 16 34 H 0.12 2.77 5.62 -51.93 -0.29 2.48 16 35 H 0.05 0.95 4.10 -51.92 -0.21 0.74 16 36 H 0.27 6.01 8.31 -40.82 -0.34 5.67 16 37 H 0.15 2.43 3.99 -52.49 -0.21 2.22 16 38 H 0.13 1.40 5.95 -52.48 -0.31 1.09 16 39 H 0.14 2.31 8.06 -52.49 -0.42 1.88 16 40 H 0.41 5.10 8.90 -40.82 -0.36 4.74 16 41 H 0.07 0.45 6.31 -51.93 -0.33 0.13 16 42 H 0.08 0.70 7.86 -51.93 -0.41 0.29 16 43 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.05 0.36 7.98 -51.93 -0.41 -0.05 16 45 H 0.08 0.50 6.01 -51.93 -0.31 0.19 16 46 H 0.08 0.63 6.77 -51.93 -0.35 0.28 16 LS Contribution 357.16 15.07 5.38 5.38 Total: -1.00 -30.01 357.16 -8.29 -38.31 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: -5.94 Total: 9.36 kcal Atomic # 6 Polarization: 4.96 SS G_CDS: -2.14 Total: 2.82 kcal Atomic # 7 Polarization: -45.17 SS G_CDS: -0.74 Total: -45.91 kcal Atomic # 8 Polarization: -24.72 SS G_CDS: 0.18 Total: -24.54 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -5.03 Total: 14.58 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.01 -8.29 -38.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267331808.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.396 kcal (2) G-P(sol) polarization free energy of solvation -30.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds