Wall clock time and date at job start Tue Mar 31 2020 16:08:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53007 * 109.46861 * 2 1 4 4 N 1.46497 * 109.47070 * 186.22780 * 3 2 1 5 5 C 1.36907 * 119.99677 * 286.24706 * 4 3 2 6 6 H 1.08002 * 119.99752 * 166.09324 * 5 4 3 7 7 C 1.39017 * 120.00272 * 346.09327 * 5 4 3 8 8 N 1.31384 * 119.99466 * 16.34913 * 7 5 4 9 9 Si 1.86797 * 120.00015 * 196.35122 * 7 5 4 10 10 H 1.48497 * 109.47313 * 59.99560 * 9 7 5 11 11 H 1.48494 * 109.47100 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.46972 * 300.00051 * 9 7 5 13 13 C 1.34770 * 120.00209 * 106.25153 * 4 3 2 14 14 O 1.21632 * 120.00516 * 186.45190 * 13 4 3 15 15 C 1.47422 * 119.99938 * 6.44700 * 13 4 3 16 16 C 1.39843 * 120.09067 * 319.08360 * 15 13 4 17 17 C 1.37664 * 120.14343 * 180.29612 * 16 15 13 18 18 C 1.39127 * 120.18209 * 359.48321 * 17 16 15 19 19 C 1.39804 * 119.85924 * 0.38632 * 18 17 16 20 20 C 1.38010 * 120.22677 * 359.93820 * 19 18 17 21 21 N 1.40359 * 119.45114 * 180.02562 * 19 18 17 22 22 C 1.35148 * 118.51641 * 18.18524 * 21 19 18 23 23 O 1.21296 * 120.31800 * 180.70416 * 22 21 19 24 24 C 1.50693 * 119.36693 * 0.73030 * 22 21 19 25 25 H 1.08992 * 109.28262 * 85.12185 * 24 22 21 26 26 C 1.53004 * 109.37193 * 204.82873 * 24 22 21 27 27 N 1.39082 * 119.98314 * 180.10386 * 18 17 16 28 28 C 1.46900 * 110.99914 * 19.72036 * 27 18 17 29 29 H 1.09000 * 109.46605 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46846 * 299.99739 * 1 2 3 31 31 H 1.08992 * 109.47408 * 60.00031 * 1 2 3 32 32 H 1.08996 * 109.47250 * 240.00335 * 2 1 3 33 33 H 1.08996 * 109.47611 * 119.99524 * 2 1 3 34 34 H 1.09000 * 109.47276 * 66.22382 * 3 2 1 35 35 H 1.09009 * 109.46780 * 306.22672 * 3 2 1 36 36 H 0.97006 * 119.99477 * 179.97438 * 8 7 5 37 37 H 1.07997 * 119.92433 * 0.04149 * 16 15 13 38 38 H 1.08004 * 119.91061 * 179.75406 * 17 16 15 39 39 H 1.08001 * 120.11708 * 179.84415 * 20 19 18 40 40 H 0.97000 * 120.73907 * 198.20703 * 21 19 18 41 41 H 1.09002 * 109.47003 * 180.57829 * 26 24 22 42 42 H 1.08999 * 109.47236 * 300.58269 * 26 24 22 43 43 H 1.09004 * 109.47150 * 60.58045 * 26 24 22 44 44 H 1.08991 * 109.47563 * 56.04028 * 28 27 18 45 45 H 1.09001 * 109.47532 * 176.04685 * 28 27 18 46 46 H 1.09002 * 109.46769 * 296.03983 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.4973 1.4454 -0.1498 5 6 4.2940 1.0740 0.8998 6 1 5.3392 0.8583 0.7344 7 6 3.7576 0.9745 2.1784 8 7 2.4552 0.9171 2.3417 9 14 4.8885 0.9227 3.6643 10 1 5.7010 2.1648 3.7116 11 1 4.0751 0.8151 4.9019 12 1 5.7887 -0.2539 3.5603 13 6 4.0536 1.8136 -1.3208 14 8 5.2539 1.7046 -1.4849 15 6 3.2074 2.3484 -2.4030 16 6 1.9612 1.7721 -2.6685 17 6 1.1727 2.2668 -3.6828 18 6 1.6068 3.3490 -4.4417 19 6 2.8508 3.9298 -4.1780 20 6 3.6487 3.4341 -3.1668 21 7 3.2800 5.0216 -4.9486 22 6 2.3597 5.7132 -5.6565 23 8 2.6963 6.6545 -6.3435 24 6 0.9111 5.3042 -5.5837 25 1 0.4480 5.7726 -4.7154 26 6 0.1899 5.7627 -6.8528 27 7 0.8059 3.8468 -5.4641 28 6 -0.5923 3.4327 -5.2865 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5137 0.8900 34 1 1.7705 1.9233 0.9404 35 1 1.5884 1.9876 -0.8291 36 1 2.0809 0.8474 3.2340 37 1 1.6184 0.9346 -2.0791 38 1 0.2126 1.8163 -3.8871 39 1 4.6105 3.8826 -2.9663 40 1 4.2163 5.2738 -4.9728 41 1 -0.8604 5.4766 -6.7973 42 1 0.2672 6.8462 -6.9433 43 1 0.6492 5.2918 -7.7220 44 1 -0.9435 3.7504 -4.3048 45 1 -1.2084 3.8926 -6.0592 46 1 -0.6625 2.3477 -5.3639 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267331808.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:10 Heat of formation + Delta-G solvation = -16.846116 kcal Electronic energy + Delta-G solvation = -29323.355321 eV Core-core repulsion = 25406.627136 eV Total energy + Delta-G solvation = -3916.728185 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.53710 -40.93766 -39.59707 -37.87773 -37.31667 -36.28900 -34.09100 -33.25769 -32.78894 -30.90765 -30.08542 -28.34055 -27.42089 -26.32776 -24.57596 -24.08439 -23.28830 -22.24493 -21.60335 -20.08218 -19.36253 -18.91651 -18.75200 -17.97983 -17.26789 -17.02922 -16.69470 -16.07505 -15.97644 -15.53990 -15.46330 -15.28951 -15.18488 -15.07589 -14.94840 -14.42459 -13.91279 -13.83360 -13.60749 -13.49360 -13.40812 -13.15199 -12.89980 -12.86252 -12.69161 -12.48379 -12.36569 -12.13934 -12.07151 -12.01981 -11.88270 -11.71095 -11.37497 -11.31071 -10.92737 -10.62314 -10.39506 -9.78646 -9.50245 -8.60847 -8.21313 -5.84731 -0.09578 0.19051 1.22968 1.40237 1.42948 1.50989 1.81329 2.05822 2.25183 2.49566 2.74658 2.95666 3.09746 3.17795 3.57288 3.81356 3.90010 3.98079 4.14607 4.22266 4.29866 4.45704 4.51096 4.58455 4.60994 4.71350 4.73396 4.75426 4.77924 4.83704 4.98204 5.03719 5.11097 5.17331 5.24836 5.33973 5.39748 5.43689 5.48246 5.53200 5.56298 5.70959 5.78192 5.86920 5.99464 6.11341 6.14843 6.57107 6.77449 7.16743 7.47747 8.03655 8.61193 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.018534 B = 0.003428 C = 0.003058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.347296 B = 8166.846636 C = 9154.929291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.112 4.112 3 C 0.096 3.904 4 N -0.435 5.435 5 C -0.344 4.344 6 H 0.070 0.930 7 C 0.011 3.989 8 N -0.858 5.858 9 Si 0.982 3.018 10 H -0.281 1.281 11 H -0.264 1.264 12 H -0.276 1.276 13 C 0.455 3.545 14 O -0.647 6.647 15 C -0.115 4.115 16 C -0.092 4.092 17 C -0.124 4.124 18 C 0.094 3.906 19 C 0.104 3.896 20 C -0.090 4.090 21 N -0.658 5.658 22 C 0.522 3.478 23 O -0.549 6.549 24 C 0.067 3.933 25 H 0.100 0.900 26 C -0.127 4.127 27 N -0.485 5.485 28 C 0.009 3.991 29 H 0.057 0.943 30 H 0.050 0.950 31 H 0.067 0.933 32 H 0.027 0.973 33 H 0.063 0.937 34 H 0.102 0.898 35 H 0.077 0.923 36 H 0.274 0.726 37 H 0.147 0.853 38 H 0.178 0.822 39 H 0.121 0.879 40 H 0.416 0.584 41 H 0.102 0.898 42 H 0.074 0.926 43 H 0.060 0.940 44 H 0.058 0.942 45 H 0.106 0.894 46 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.179 4.581 -11.279 19.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.151 4.151 3 C -0.025 4.025 4 N -0.149 5.149 5 C -0.472 4.472 6 H 0.088 0.912 7 C -0.193 4.193 8 N -0.496 5.496 9 Si 0.806 3.194 10 H -0.207 1.207 11 H -0.188 1.188 12 H -0.202 1.202 13 C 0.247 3.753 14 O -0.538 6.538 15 C -0.120 4.120 16 C -0.112 4.112 17 C -0.145 4.145 18 C -0.007 4.007 19 C 0.007 3.993 20 C -0.112 4.112 21 N -0.303 5.303 22 C 0.310 3.690 23 O -0.425 6.425 24 C -0.042 4.042 25 H 0.117 0.883 26 C -0.185 4.185 27 N -0.201 5.201 28 C -0.136 4.136 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.086 0.914 32 H 0.046 0.954 33 H 0.082 0.918 34 H 0.119 0.881 35 H 0.095 0.905 36 H 0.085 0.915 37 H 0.165 0.835 38 H 0.195 0.805 39 H 0.139 0.861 40 H 0.255 0.745 41 H 0.121 0.879 42 H 0.093 0.907 43 H 0.079 0.921 44 H 0.077 0.923 45 H 0.124 0.876 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -14.688 4.869 -12.038 19.605 hybrid contribution 1.851 0.137 1.676 2.501 sum -12.836 5.006 -10.363 17.240 Atomic orbital electron populations 1.21564 0.93694 1.01599 1.01921 1.21686 0.96689 0.96548 1.00135 1.22629 0.78170 0.98492 1.03251 1.43936 1.07510 1.53865 1.09637 1.19571 0.94019 1.46599 0.86983 0.91163 1.25883 0.97806 0.95443 1.00143 1.70121 1.10336 1.45411 1.23703 0.85172 0.78257 0.78480 0.77443 1.20655 1.18814 1.20152 1.18469 0.87489 0.85277 0.84111 1.90555 1.17536 1.63129 1.82554 1.19681 0.96231 0.98438 0.97621 1.21692 0.91954 1.00275 0.97283 1.21140 1.02052 0.97018 0.94327 1.18804 0.92728 0.97203 0.91969 1.17236 0.95383 0.91707 0.94963 1.20439 0.99717 0.96854 0.94179 1.43798 1.11905 1.28997 1.45646 1.21243 0.89124 0.81206 0.77417 1.90740 1.82046 1.29297 1.40448 1.21901 0.91344 0.87394 1.03604 0.88286 1.21758 1.01102 1.02115 0.93524 1.58409 1.11837 1.09885 1.39936 1.22931 0.83531 1.03941 1.03166 0.92417 0.93046 0.91418 0.95441 0.91833 0.88096 0.90536 0.91500 0.83542 0.80508 0.86124 0.74471 0.87948 0.90690 0.92108 0.92311 0.87591 0.88396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.64 9.88 71.98 0.71 -2.93 16 2 C -0.11 -4.30 4.68 30.60 0.14 -4.16 16 3 C 0.10 4.06 4.18 86.38 0.36 4.42 16 4 N -0.43 -22.36 2.69 -639.25 -1.72 -24.08 16 5 C -0.34 -19.27 9.26 84.09 0.78 -18.49 16 6 H 0.07 4.31 7.27 -2.91 -0.02 4.28 16 7 C 0.01 0.53 5.29 84.95 0.45 0.98 16 8 N -0.86 -40.63 7.67 21.68 0.17 -40.46 16 9 Si 0.98 41.18 29.58 68.60 2.03 43.21 16 10 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 11 H -0.26 -10.18 7.11 99.48 0.71 -9.48 16 12 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 13 C 0.46 23.50 7.26 86.66 0.63 24.13 16 14 O -0.65 -38.81 16.56 -4.13 -0.07 -38.88 16 15 C -0.11 -4.57 5.33 -20.07 -0.11 -4.68 16 16 C -0.09 -2.87 7.30 22.52 0.16 -2.71 16 17 C -0.12 -2.85 8.93 22.35 0.20 -2.65 16 18 C 0.09 2.29 5.91 38.58 0.23 2.52 16 19 C 0.10 3.03 6.49 38.10 0.25 3.28 16 20 C -0.09 -3.20 9.53 22.62 0.22 -2.98 16 21 N -0.66 -17.67 5.49 -302.63 -1.66 -19.33 16 22 C 0.52 13.58 7.66 87.60 0.67 14.26 16 23 O -0.55 -16.95 16.95 -3.08 -0.05 -17.00 16 24 C 0.07 1.25 2.55 44.22 0.11 1.36 16 25 H 0.10 1.60 8.13 -2.39 -0.02 1.58 16 26 C -0.13 -1.77 8.63 71.98 0.62 -1.15 16 27 N -0.49 -8.96 4.65 -700.43 -3.26 -12.22 16 28 C 0.01 0.09 8.30 127.69 1.06 1.15 16 29 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.07 1.50 7.98 -2.39 -0.02 1.49 16 32 H 0.03 1.05 7.20 -2.39 -0.02 1.03 16 33 H 0.06 2.88 6.19 -2.39 -0.01 2.86 16 34 H 0.10 4.68 5.62 -2.39 -0.01 4.66 16 35 H 0.08 2.81 4.10 -2.38 -0.01 2.80 16 36 H 0.27 12.16 8.31 -92.70 -0.77 11.39 16 37 H 0.15 4.57 3.99 -2.91 -0.01 4.56 16 38 H 0.18 2.56 5.95 -2.91 -0.02 2.54 16 39 H 0.12 4.50 8.06 -2.91 -0.02 4.48 16 40 H 0.42 10.49 8.90 -92.71 -0.83 9.66 16 41 H 0.10 0.75 6.31 -2.39 -0.02 0.74 16 42 H 0.07 1.12 7.86 -2.39 -0.02 1.10 16 43 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 44 H 0.06 0.52 7.98 -2.39 -0.02 0.50 16 45 H 0.11 0.60 6.01 -2.39 -0.01 0.58 16 46 H 0.10 0.79 6.77 -2.39 -0.02 0.77 16 Total: -1.00 -71.51 357.16 2.14 -69.37 By element: Atomic # 1 Polarization: 26.84 SS G_CDS: 0.22 Total: 27.05 kcal Atomic # 6 Polarization: 5.85 SS G_CDS: 6.49 Total: 12.34 kcal Atomic # 7 Polarization: -89.62 SS G_CDS: -6.47 Total: -96.09 kcal Atomic # 8 Polarization: -55.76 SS G_CDS: -0.12 Total: -55.88 kcal Atomic # 14 Polarization: 41.18 SS G_CDS: 2.03 Total: 43.21 kcal Total: -71.51 2.14 -69.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267331808.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.522 kcal (2) G-P(sol) polarization free energy of solvation -71.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds